mRNA_H-canaliculatus_F_contig12110.1833.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: A0A6H5KDT9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDT9_9PHAE) HSP 1 Score: 115 bits (289), Expect = 2.880e-29 Identity = 58/97 (59.79%), Postives = 69/97 (71.13%), Query Frame = 1
Query: 1 RRNAWFAHCEGICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAIRHNGGSEKARSGGGGTLRFRGAGEIVEVRRRE 291
RR A GICLETVDDQGFLL+R + GVLA +C HA+CF C+ WSERTNTCP+CKERFNAIR+ GGS+ +R AGEIVEV+ R+
Sbjct: 49 RRQTMAATTCGICLETVDDQGFLLKRAACGVLAPACAHAYCFACISIWSERTNTCPLCKERFNAIRNGGGSKSG-------IRL-AAGEIVEVQERD 137
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: D7FGZ2_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGZ2_ECTSI) HSP 1 Score: 116 bits (291), Expect = 3.020e-29 Identity = 59/97 (60.82%), Postives = 68/97 (70.10%), Query Frame = 1
Query: 1 RRNAWFAHCEGICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAIRHNGGSEKARSGGGGTLRFRGAGEIVEVRRRE 291
RR A GICLETVDDQGFLLRR + VLA +C HA+CF C+ WSERTNTCP+CKERFNAIRH GGS+ +R AGEIVEV+ R+
Sbjct: 48 RRQIMAATTCGICLETVDDQGFLLRRAACDVLAPACAHAYCFACISIWSERTNTCPLCKERFNAIRHGGGSKSG-------IRL-AAGEIVEVQERD 136
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: A0A836CLS4_9STRA (RING-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLS4_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 4.610e-9 Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1
Query: 52 DDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAI 195
DD L +L S C H FCF C+V+WSER NTCP+C+ RF++I
Sbjct: 5 DDCSICLDQLPSERGTLQCGHTFCFGCIVSWSERQNTCPLCQGRFDSI 52
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: A0A1X7SWK5_AMPQE (RING-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SWK5_AMPQE) HSP 1 Score: 55.8 bits (133), Expect = 3.630e-8 Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 1
Query: 34 ICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAI 195
ICLE D++ F+ + C HAFC+VC+V WSE +N CPMCK F ++
Sbjct: 33 ICLEDYDNKAFV----------NVCFHAFCYVCIVQWSEVSNKCPMCKVSFKSL 76
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: A0A1Y1IBM1_KLENI (Zinc finger RING-type domain containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IBM1_KLENI) HSP 1 Score: 57.8 bits (138), Expect = 1.350e-7 Identity = 25/55 (45.45%), Postives = 32/55 (58.18%), Query Frame = 1
Query: 31 GICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAI 195
GICL VDDQG L SC HA+CF C++ WS+ + CP CK RF+ +
Sbjct: 50 GICLAEVDDQGLL----------DSCQHAYCFDCIMKWSQVESRCPTCKRRFHRV 94
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: A0A7M5WYF4_9CNID (RING-type domain-containing protein n=4 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5WYF4_9CNID) HSP 1 Score: 57.4 bits (137), Expect = 1.850e-7 Identity = 23/54 (42.59%), Postives = 34/54 (62.96%), Query Frame = 1
Query: 34 ICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAI 195
+CL+ V+ +G ++ C H FCFVC+ WS++TNTCP+CK+RF I
Sbjct: 38 VCLDKVNVRGVII-----------CAHWFCFVCIHEWSKKTNTCPLCKQRFRCI 80
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: UPI000C1D5C17 (uncharacterized protein LOC111372027 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D5C17) HSP 1 Score: 55.8 bits (133), Expect = 6.310e-7 Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 1
Query: 25 CEGICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAIR 198
C GICL + G +S G + SC+H FCFVC++ W++ + CP+CK RF+ IR
Sbjct: 56 CCGICLS--ESGGDCNTSVSRGCI-DSCSHYFCFVCIIEWAKVESKCPLCKRRFSTIR 110
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: A0A1X7U9A6_AMPQE (RING-type domain-containing protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U9A6_AMPQE) HSP 1 Score: 55.8 bits (133), Expect = 6.350e-7 Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 1
Query: 34 ICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAI 195
ICLE D++ F+ + C HAFC+VC+V WSE +N CPMCK F ++
Sbjct: 33 ICLEDYDNKAFV----------NVCFHAFCYVCIVQWSEVSNKCPMCKVSFKSL 76
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: A0A7S0SVY1_9STRA (Hypothetical protein n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SVY1_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 1.090e-6 Identity = 21/55 (38.18%), Postives = 33/55 (60.00%), Query Frame = 1
Query: 34 ICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAIR 198
ICL+ + ++G + SCTH FCF C++ WS+ TN CP+CK+ F ++
Sbjct: 10 ICLDNIIEEGKI----------DSCTHTFCFQCIINWSKVTNLCPVCKKEFKKVK 54
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: UPI000F5548B1 (E3 ubiquitin-protein ligase RNF8-like n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F5548B1) HSP 1 Score: 53.5 bits (127), Expect = 1.400e-6 Identity = 22/56 (39.29%), Postives = 30/56 (53.57%), Query Frame = 1
Query: 34 ICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAIRH 201
+CL D++ FL C HAFC+ C++ WSE TCP+CK F +I H
Sbjct: 99 VCLSEYDNKSFL----------DKCFHAFCYFCILQWSEIVRTCPLCKSSFTSIIH 144 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12110.1833.1 >prot_H-canaliculatus_F_contig12110.1833.1 ID=prot_H-canaliculatus_F_contig12110.1833.1|Name=mRNA_H-canaliculatus_F_contig12110.1833.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=98bp RRNAWFAHCEGICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSEback to top mRNA from alignment at H-canaliculatus_F_contig12110:3091..3384+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12110.1833.1 ID=mRNA_H-canaliculatus_F_contig12110.1833.1|Name=mRNA_H-canaliculatus_F_contig12110.1833.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=294bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12110:3091..3384+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12110:3091..3384+ >mRNA_H-canaliculatus_F_contig12110.1833.1 ID=mRNA_H-canaliculatus_F_contig12110.1833.1|Name=mRNA_H-canaliculatus_F_contig12110.1833.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12110:3091..3384+ (Hapterophycus canaliculatus Oshoro5f female)back to top |