mRNA_H-canaliculatus_F_contig12110.1833.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12110.1833.1
Unique NamemRNA_H-canaliculatus_F_contig12110.1833.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: A0A6H5KDT9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDT9_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 2.880e-29
Identity = 58/97 (59.79%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    1 RRNAWFAHCEGICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAIRHNGGSEKARSGGGGTLRFRGAGEIVEVRRRE 291
            RR    A   GICLETVDDQGFLL+R + GVLA +C HA+CF C+  WSERTNTCP+CKERFNAIR+ GGS+         +R   AGEIVEV+ R+
Sbjct:   49 RRQTMAATTCGICLETVDDQGFLLKRAACGVLAPACAHAYCFACISIWSERTNTCPLCKERFNAIRNGGGSKSG-------IRL-AAGEIVEVQERD 137          
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: D7FGZ2_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGZ2_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 3.020e-29
Identity = 59/97 (60.82%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    1 RRNAWFAHCEGICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAIRHNGGSEKARSGGGGTLRFRGAGEIVEVRRRE 291
            RR    A   GICLETVDDQGFLLRR +  VLA +C HA+CF C+  WSERTNTCP+CKERFNAIRH GGS+         +R   AGEIVEV+ R+
Sbjct:   48 RRQIMAATTCGICLETVDDQGFLLRRAACDVLAPACAHAYCFACISIWSERTNTCPLCKERFNAIRHGGGSKSG-------IRL-AAGEIVEVQERD 136          
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: A0A836CLS4_9STRA (RING-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLS4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.610e-9
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1
Query:   52 DDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAI 195
            DD    L +L S      C H FCF C+V+WSER NTCP+C+ RF++I
Sbjct:    5 DDCSICLDQLPSERGTLQCGHTFCFGCIVSWSERQNTCPLCQGRFDSI 52          
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: A0A1X7SWK5_AMPQE (RING-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SWK5_AMPQE)

HSP 1 Score: 55.8 bits (133), Expect = 3.630e-8
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 1
Query:   34 ICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAI 195
            ICLE  D++ F+          + C HAFC+VC+V WSE +N CPMCK  F ++
Sbjct:   33 ICLEDYDNKAFV----------NVCFHAFCYVCIVQWSEVSNKCPMCKVSFKSL 76          
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: A0A1Y1IBM1_KLENI (Zinc finger RING-type domain containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IBM1_KLENI)

HSP 1 Score: 57.8 bits (138), Expect = 1.350e-7
Identity = 25/55 (45.45%), Postives = 32/55 (58.18%), Query Frame = 1
Query:   31 GICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAI 195
            GICL  VDDQG L           SC HA+CF C++ WS+  + CP CK RF+ +
Sbjct:   50 GICLAEVDDQGLL----------DSCQHAYCFDCIMKWSQVESRCPTCKRRFHRV 94          
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: A0A7M5WYF4_9CNID (RING-type domain-containing protein n=4 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5WYF4_9CNID)

HSP 1 Score: 57.4 bits (137), Expect = 1.850e-7
Identity = 23/54 (42.59%), Postives = 34/54 (62.96%), Query Frame = 1
Query:   34 ICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAI 195
            +CL+ V+ +G ++           C H FCFVC+  WS++TNTCP+CK+RF  I
Sbjct:   38 VCLDKVNVRGVII-----------CAHWFCFVCIHEWSKKTNTCPLCKQRFRCI 80          
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: UPI000C1D5C17 (uncharacterized protein LOC111372027 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D5C17)

HSP 1 Score: 55.8 bits (133), Expect = 6.310e-7
Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   25 CEGICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAIR 198
            C GICL   +  G     +S G +  SC+H FCFVC++ W++  + CP+CK RF+ IR
Sbjct:   56 CCGICLS--ESGGDCNTSVSRGCI-DSCSHYFCFVCIIEWAKVESKCPLCKRRFSTIR 110          
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: A0A1X7U9A6_AMPQE (RING-type domain-containing protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U9A6_AMPQE)

HSP 1 Score: 55.8 bits (133), Expect = 6.350e-7
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 1
Query:   34 ICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAI 195
            ICLE  D++ F+          + C HAFC+VC+V WSE +N CPMCK  F ++
Sbjct:   33 ICLEDYDNKAFV----------NVCFHAFCYVCIVQWSEVSNKCPMCKVSFKSL 76          
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: A0A7S0SVY1_9STRA (Hypothetical protein n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SVY1_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.090e-6
Identity = 21/55 (38.18%), Postives = 33/55 (60.00%), Query Frame = 1
Query:   34 ICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAIR 198
            ICL+ + ++G +           SCTH FCF C++ WS+ TN CP+CK+ F  ++
Sbjct:   10 ICLDNIIEEGKI----------DSCTHTFCFQCIINWSKVTNLCPVCKKEFKKVK 54          
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Match: UPI000F5548B1 (E3 ubiquitin-protein ligase RNF8-like n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F5548B1)

HSP 1 Score: 53.5 bits (127), Expect = 1.400e-6
Identity = 22/56 (39.29%), Postives = 30/56 (53.57%), Query Frame = 1
Query:   34 ICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSERTNTCPMCKERFNAIRH 201
            +CL   D++ FL            C HAFC+ C++ WSE   TCP+CK  F +I H
Sbjct:   99 VCLSEYDNKSFL----------DKCFHAFCYFCILQWSEIVRTCPLCKSSFTSIIH 144          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12110.1833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDT9_9PHAE2.880e-2959.79RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FGZ2_ECTSI3.020e-2960.82RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CLS4_9STRA4.610e-950.00RING-type domain-containing protein (Fragment) n=1... [more]
A0A1X7SWK5_AMPQE3.630e-844.44RING-type domain-containing protein n=1 Tax=Amphim... [more]
A0A1Y1IBM1_KLENI1.350e-745.45Zinc finger RING-type domain containing protein n=... [more]
A0A7M5WYF4_9CNID1.850e-742.59RING-type domain-containing protein n=4 Tax=Clytia... [more]
UPI000C1D5C176.310e-743.10uncharacterized protein LOC111372027 n=1 Tax=Olea ... [more]
A0A1X7U9A6_AMPQE6.350e-744.44RING-type domain-containing protein n=2 Tax=Amphim... [more]
A0A7S0SVY1_9STRA1.090e-638.18Hypothetical protein n=2 Tax=Chromulina nebulosa T... [more]
UPI000F5548B11.400e-639.29E3 ubiquitin-protein ligase RNF8-like n=1 Tax=Poci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12110contigH-canaliculatus_F_contig12110:3091..3384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-26_002860.1
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.2446566-CDS-H-canaliculatus_F_contig12110:3090..33841622928925.2446566-CDS-H-canaliculatus_F_contig12110:3090..3384Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12110 3091..3384 +
1696845614.732296-CDS-H-canaliculatus_F_contig12110:3090..33841696845614.732296-CDS-H-canaliculatus_F_contig12110:3090..3384Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12110 3091..3384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12110.1833.1prot_H-canaliculatus_F_contig12110.1833.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12110 3091..3384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12110.1833.1

>prot_H-canaliculatus_F_contig12110.1833.1 ID=prot_H-canaliculatus_F_contig12110.1833.1|Name=mRNA_H-canaliculatus_F_contig12110.1833.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=98bp
RRNAWFAHCEGICLETVDDQGFLLRRLSSGVLASSCTHAFCFVCVVTWSE
RTNTCPMCKERFNAIRHNGGSEKARSGGGGTLRFRGAGEIVEVRRRER
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mRNA from alignment at H-canaliculatus_F_contig12110:3091..3384+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12110.1833.1 ID=mRNA_H-canaliculatus_F_contig12110.1833.1|Name=mRNA_H-canaliculatus_F_contig12110.1833.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=294bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12110:3091..3384+ (Hapterophycus canaliculatus Oshoro5f female)
CGACGCAACGCTTGGTTTGCTCATTGTGAAGGCATATGCTTGGAGACCGT TGACGATCAGGGTTTCCTCTTGAGGAGGCTTTCGTCCGGTGTTCTTGCGT CCTCGTGCACGCACGCCTTCTGCTTCGTGTGCGTCGTGACCTGGTCCGAG CGGACGAATACGTGCCCCATGTGCAAGGAGAGGTTTAACGCCATCCGTCA CAACGGCGGCAGCGAAAAAGCCCGTAGCGGCGGCGGCGGCACTCTGAGGT TCCGTGGAGCTGGCGAGATCGTCGAGGTAAGACGCAGAGAAAGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12110:3091..3384+

>mRNA_H-canaliculatus_F_contig12110.1833.1 ID=mRNA_H-canaliculatus_F_contig12110.1833.1|Name=mRNA_H-canaliculatus_F_contig12110.1833.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12110:3091..3384+ (Hapterophycus canaliculatus Oshoro5f female)
CGACGCAACGCTTGGTTTGCTCATTGTGAAGGCATATGCTTGGAGACCGT
TGACGATCAGGGTTTCCTCTTGAGGAGGCTTTCGTCCGGTGTTCTTGCGT
CCTCGTGCACGCACGCCTTCTGCTTCGTGTGCGTCGTGACCTGGTCCGAG
CGGACGAATACGTGCCCCATGTGCAAGGAGAGGTTTAACGCCATCCGTCA
CAACGGCGGCAGCGAAAAAGCCCGTAGCGGCGGCGGCGGCACTCTGAGGT
TCCGTGGAGCTGGCGAGATCGTCGAGGTAAGACGCAGAGAAAGACGACGC
AACGCTTGGTTTGCTCATTGTGAAGGCATATGCTTGGAGACCGTTGACGA
TCAGGGTTTCCTCTTGAGGAGGCTTTCGTCCGGTGTTCTTGCGTCCTCGT
GCACGCACGCCTTCTGCTTCGTGTGCGTCGTGACCTGGTCCGAGCGGACG
AATACGTGCCCCATGTGCAAGGAGAGGTTTAACGCCATCCGTCACAACGG
CGGCAGCGAAAAAGCCCGTAGCGGCGGCGGCGGCACTCTGAGGTTCCGTG
GAGCTGGCGAGATCGTCGAGGTAAGACGCAGAGAAAGA
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