mRNA_H-canaliculatus_F_contig12090.1810.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12090.1810.1
Unique NamemRNA_H-canaliculatus_F_contig12090.1810.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: D7FIQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ3_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.620e-31
Identity = 59/105 (56.19%), Postives = 76/105 (72.38%), Query Frame = 1
Query:    1 RSIDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEANAEAVLLKAARLKE 315
             SI+TL+ F+WL  VFDE H YKNP T K +A +KLV+AEVFIGLTGTL+QNNLDE+W ++N +Q GC+  ++ F  HFT PILRG +  A+   VLL   R+ E
Sbjct:  423 NSIETLSEFDWLTAVFDEFHHYKNPYTNKNRAVQKLVNAEVFIGLTGTLVQNNLDEYWSLLNTVQPGCVGRQDDFKRHFTEPILRGRKRGASRADVLLGRERIDE 527          
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: UPI00117BE181 (DNA excision repair protein ERCC-6-like 2 n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=UPI00117BE181)

HSP 1 Score: 84.7 bits (208), Expect = 6.190e-17
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    7 IDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEANAEAV 288
            +D     +W  VV DE H  KNP +   QA ++L   +V IGLTGT++QNNL+E WC+M+  Q+GCL    +F   F+ PI +G ++ A   AV
Sbjct:  246 LDQFNSIDWSAVVVDEAHKIKNPNSQITQAMKEL-RCQVRIGLTGTILQNNLEELWCVMDWAQSGCLGSLGHFKNKFSDPIEQGQRHSATKRAV 338          
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: UPI0009A3C3F5 (DNA excision repair protein ERCC-6-like 2 isoform X1 n=3 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A3C3F5)

HSP 1 Score: 82.8 bits (203), Expect = 2.930e-16
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    7 IDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEA 273
            +D +  FEW  V  DE H  KNPK    QA  K +  ++ IGLTGT++QNN+DE WC+M+    GCL +R  F E F  PI  G ++ A
Sbjct:  257 LDDINCFEWSAVFVDEAHKIKNPKAQITQAL-KALKCKIRIGLTGTILQNNMDELWCVMDWAIPGCLGNRARFKEEFCNPIEFGQRHTA 344          
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: UPI00148C7EBF (DNA excision repair protein ERCC-6-like 2 n=3 Tax=Hippoglossus TaxID=8266 RepID=UPI00148C7EBF)

HSP 1 Score: 81.6 bits (200), Expect = 7.460e-16
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    4 SIDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEANAEAV 288
            S+D     +W  VV DE H  KNPK+   QA +++   +V IGLTGT++QNNL+E WC+M+    GCL +  +F   F+ PI +G ++     A+
Sbjct:  258 SLDQFNNIDWSAVVVDEAHKIKNPKSQITQAMKEM-KCKVRIGLTGTILQNNLEELWCVMDWAIPGCLGNLGHFKNKFSDPIEQGQRHSVTKRAL 351          
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: UPI001BD49BEA (DNA excision repair protein ERCC-6-like 2 n=1 Tax=Cheilinus undulatus TaxID=241271 RepID=UPI001BD49BEA)

HSP 1 Score: 81.3 bits (199), Expect = 1.020e-15
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    4 SIDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEANAEAV 288
            S+D     +W  V+ DE H  KNP +   QA ++L   +V IGLTGT++QNNL+E WC+M+    GCL +  +F   F+ PI +G ++ A   A+
Sbjct:  246 SLDQFNNIDWSAVIVDEAHKIKNPNSQITQAMKEL-RCKVRIGLTGTILQNNLEELWCVMDWAIPGCLGNLGHFKNKFSDPIEQGQKHSATKRAL 339          
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: UPI001CD8C6F0 (DNA excision repair protein ERCC-6-like 2 isoform X1 n=2 Tax=Solea senegalensis TaxID=28829 RepID=UPI001CD8C6F0)

HSP 1 Score: 81.3 bits (199), Expect = 1.020e-15
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    7 IDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEANAEAV 288
            +D     +W  VV DE H  KNP +   QA ++L+  ++ IGLTGT++QNNL+E WC+M+  + GCL    +F   F+ P+  G ++ A   A+
Sbjct:  254 LDQFNNIDWSAVVVDEAHKIKNPNSQITQAMKELI-CKIRIGLTGTILQNNLEELWCVMDWARPGCLGSLGHFKNKFSDPVEHGQRHSATKRAL 346          
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: A0A8J6FFJ7_ELECQ (Uncharacterized protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6FFJ7_ELECQ)

HSP 1 Score: 80.9 bits (198), Expect = 1.370e-15
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    7 IDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEA 273
            +D L   EW  V+ DEVH  KNPK  +     K +  ++ IGLTGT++QNN++E WC+M+    GCL  R  F E ++ PI  G ++ A
Sbjct:  278 LDDLNSIEWSAVIVDEVHKIKNPKA-RVTEVMKALRCKIRIGLTGTILQNNMEELWCVMDWAVPGCLGGRTQFIEEYSHPIELGQRHNA 365          
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: A0A667XQU1_9TELE (ERCC excision repair 6 like 2 n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667XQU1_9TELE)

HSP 1 Score: 80.9 bits (198), Expect = 1.390e-15
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 1
Query:    7 IDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEANAEAV 288
            +D     +W  V+ DE H  KNP +   QA + L   +V IGLTGT++QNNL+E WC+M+    GCL    +F   F+ PI +G +Y A   A+
Sbjct:  252 LDQFNSVDWSAVIVDEAHKIKNPNSQITQAMKDL-KCQVRIGLTGTILQNNLEELWCVMDWAIPGCLGSLGHFKSRFSDPIEKGQRYSATKRAL 344          
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: UPI001CF17D00 (DNA excision repair protein ERCC-6-like 2 isoform X4 n=1 Tax=Bufo gargarizans TaxID=30331 RepID=UPI001CF17D00)

HSP 1 Score: 80.5 bits (197), Expect = 1.830e-15
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    7 IDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEA 273
            +D L   EW  V+ DEVH  KNPK  +   A K +  ++ IGLTGT++QNN++E WC+++    GCL  ++ F E ++ PI  G ++ A
Sbjct:  264 LDDLNSVEWSAVIVDEVHKIKNPKA-RVTGAMKALRCKIRIGLTGTILQNNMEELWCVVDWAVPGCLGGKKQFIEEYSHPIELGQRHNA 351          
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: A0A672GEA1_SALFA (Excision repair cross-complementation group 6-like 2 n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672GEA1_SALFA)

HSP 1 Score: 80.5 bits (197), Expect = 1.860e-15
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    7 IDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEANAEAV 288
            ++     EW  VV DE H  KNP +L  QA ++L + +V IGLTGT++QNNL+E WC+M+    GCL    +F   F+ PI +G ++ A   ++
Sbjct:  250 LEQFNKIEWCAVVVDEAHKIKNPNSLITQAMKEL-ECKVRIGLTGTILQNNLEELWCVMDWAIPGCLGTLGHFKTQFSDPIEQGQRHSATKRSL 342          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIQ3_ECTSI1.620e-3156.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00117BE1816.190e-1742.55DNA excision repair protein ERCC-6-like 2 n=1 Tax=... [more]
UPI0009A3C3F52.930e-1644.94DNA excision repair protein ERCC-6-like 2 isoform ... [more]
UPI00148C7EBF7.460e-1640.00DNA excision repair protein ERCC-6-like 2 n=3 Tax=... [more]
UPI001BD49BEA1.020e-1540.00DNA excision repair protein ERCC-6-like 2 n=1 Tax=... [more]
UPI001CD8C6F01.020e-1538.30DNA excision repair protein ERCC-6-like 2 isoform ... [more]
A0A8J6FFJ7_ELECQ1.370e-1541.57Uncharacterized protein n=1 Tax=Eleutherodactylus ... [more]
A0A667XQU1_9TELE1.390e-1540.43ERCC excision repair 6 like 2 n=1 Tax=Myripristis ... [more]
UPI001CF17D001.830e-1540.45DNA excision repair protein ERCC-6-like 2 isoform ... [more]
A0A672GEA1_SALFA1.860e-1540.43Excision repair cross-complementation group 6-like... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12090contigH-canaliculatus_F_contig12090:2092..3505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue3.7e-27
Seed eggNOG ortholog2880.D7FIQ3
KEGG koko:K11130,ko:K20098
KEGG Pathwayko03008,map03008
KEGG ModuleM00425
EggNOG free text desc.histone H2A-H2B dimer displacement
EggNOG OGsCOG0553@1,KOG0387@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size317
Cds size315
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12090.1810.1prot_H-canaliculatus_F_contig12090.1810.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12090 2092..3505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928921.5362782-CDS-H-canaliculatus_F_contig12090:2091..21781622928921.5362782-CDS-H-canaliculatus_F_contig12090:2091..2178Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12090 2092..2178 -
1696845613.061399-CDS-H-canaliculatus_F_contig12090:2091..21781696845613.061399-CDS-H-canaliculatus_F_contig12090:2091..2178Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12090 2092..2178 -
1622928921.5678785-CDS-H-canaliculatus_F_contig12090:2897..30391622928921.5678785-CDS-H-canaliculatus_F_contig12090:2897..3039Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12090 2898..3039 -
1696845613.0761492-CDS-H-canaliculatus_F_contig12090:2897..30391696845613.0761492-CDS-H-canaliculatus_F_contig12090:2897..3039Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12090 2898..3039 -
1622928921.5826848-CDS-H-canaliculatus_F_contig12090:3419..35051622928921.5826848-CDS-H-canaliculatus_F_contig12090:3419..3505Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12090 3420..3505 -
1696845613.0905664-CDS-H-canaliculatus_F_contig12090:3419..35051696845613.0905664-CDS-H-canaliculatus_F_contig12090:3419..3505Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12090 3420..3505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12090.1810.1

>prot_H-canaliculatus_F_contig12090.1810.1 ID=prot_H-canaliculatus_F_contig12090.1810.1|Name=mRNA_H-canaliculatus_F_contig12090.1810.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=105bp
RSIDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLI
QNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEANAEAVLLKA
ARLKE
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mRNA from alignment at H-canaliculatus_F_contig12090:2092..3505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12090.1810.1 ID=mRNA_H-canaliculatus_F_contig12090.1810.1|Name=mRNA_H-canaliculatus_F_contig12090.1810.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1414bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12090:2092..3505- (Hapterophycus canaliculatus Oshoro5f female)
CGCTCCATCGACACCCTCGCCGGGTTTGAATGGCTCATCGTTGTGTTTGA CGAGGTTCACCTCTACAAAAATCCCAAGACTCTCAAGTAAGAAAACGCGG ATGACGGTTGCCAAAACATGATTGAGACTGAGCTTACGGGTGTGCGAAGG GCGGATTGTTGTCGTGTGCTTGCCAGAACTGTTTCGTTCTTCCCGACATA TTTGCAGCCTTTCGAAGGGCACTCGCCCTTTCGAGTACATCGACCGTGTT CCTCCGGGTGGGATTTCCTCCACTGTGTTGCGTTTTCTGGTTTTGCAGCT TTTTTCGATGGTCTTGCTTTTGAAGAAGATGCAAAATCGCGCGACGATTC ATCACTGCGCCGCGACAGTATGCATTCAGTCACGGGCCCTTTGCAAACGA AGGCACTTATTCTTTGGCAGTGGCGACATCATTTCAGTCACTAACGTCAA AGATACAATCGCGCAGAGCTCAAGCGGCAGAAAAGCTTGTCGACGCCGAG GTGTTCATCGGACTGACGGGGACGCTGATACAGAACAATCTGGACGAATT CTGGTGTATCATGAATATGATACAAAACGGATGCCTCAACCACCGGGAGT ACTTCACGGTGGGTTGCAGAGAGGGGAAGAGATAGAGGAGGGCCAGAGTT TTTCACAAGATATTCTCGCTCTGTGGGGTGGTGTGGTAACGCTTGAGGGA TGAAATGTAAATCTCGGCCGACCGAGCTCCTTCGCAAAATGTTCCGAGTG CGTCCAAGCACATGATGAAAACAGGACAATTGACGAGTTGTTGTGTGGAT CGCGCGCGTGATCGAGACCGGTGGTCTTGCTCCGCGAAAAGTCTCGTCGC GTTGTGGTTTTTGTCTTGGTTTTCCGCGTTGCGGAGTCCTGTGCGTGACG AAGGGCAGTGCTTGTTGATTCCCTGGATGGACGACGCCCTTTTCAGGTTT AGATACGGGTATATACACGTCTCGAGACAAGGCTTCATTGCCATTTTTCC TTTGATTTTGGTGTCCCGCACCACCATCCCGTGAGAGTATATGCTTTCGC AGCCTAGATTCACGGTCATGTTGAAGCTCTGTCTGGAGGCTAAAGGCGGC ACAAGACGCACATTCCTGCTCTTCATGCGCAAGAAATGCGTAAGAGACGG ACGTGGGAGCATCGATGGGCCGAAATACACATGTGACGCGGCTCACAAAG TGATGCTCTGGGACACTCAAAGGGAAGCATGATTCCTGATCACCTCCCCC CTTTTCCCGCCCGATCGCCCGCCCATCTGCACCGCCGCCTGTGCGTGTCG GCGTGTCGCTGCCTTTTTCAAACCTAGGAGCACTTCACGACTCCGATCCT ACGGGGTATGCAGTACGAGGCGAATGCCGAGGCAGTGCTGCTGAAGGCGG CCCGGCTGAAAGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12090:2092..3505-

>mRNA_H-canaliculatus_F_contig12090.1810.1 ID=mRNA_H-canaliculatus_F_contig12090.1810.1|Name=mRNA_H-canaliculatus_F_contig12090.1810.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=630bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12090:2092..3505- (Hapterophycus canaliculatus Oshoro5f female)
CGCTCCATCGACACCCTCGCCGGGTTTGAATGGCTCATCGTTGTGTTTGA
CGAGGTTCACCTCTACAAAAATCCCAAGACTCTCAACGCTCCATCGACAC
CCTCGCCGGGTTTGAATGGCTCATCGTTGTGTTTGACGAGGTTCACCTCT
ACAAAAATCCCAAGACTCTCAAAGCTCAAGCGGCAGAAAAGCTTGTCGAC
GCCGAGGTGTTCATCGGACTGACGGGGACGCTGATACAGAACAATCTGGA
CGAATTCTGGTGTATCATGAATATGATACAAAACGGATGCCTCAACCACC
GGGAGTACTTCACGAGCTCAAGCGGCAGAAAAGCTTGTCGACGCCGAGGT
GTTCATCGGACTGACGGGGACGCTGATACAGAACAATCTGGACGAATTCT
GGTGTATCATGAATATGATACAAAACGGATGCCTCAACCACCGGGAGTAC
TTCACGGAGCACTTCACGACTCCGATCCTACGGGGTATGCAGTACGAGGC
GAATGCCGAGGCAGTGCTGCTGAAGGCGGCCCGGCTGAAAGAGGAGCACT
TCACGACTCCGATCCTACGGGGTATGCAGTACGAGGCGAATGCCGAGGCA
GTGCTGCTGAAGGCGGCCCGGCTGAAAGAG
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