mRNA_H-canaliculatus_F_contig12090.1810.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: D7FIQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ3_ECTSI) HSP 1 Score: 126 bits (316), Expect = 1.620e-31 Identity = 59/105 (56.19%), Postives = 76/105 (72.38%), Query Frame = 1
Query: 1 RSIDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEANAEAVLLKAARLKE 315
SI+TL+ F+WL VFDE H YKNP T K +A +KLV+AEVFIGLTGTL+QNNLDE+W ++N +Q GC+ ++ F HFT PILRG + A+ VLL R+ E
Sbjct: 423 NSIETLSEFDWLTAVFDEFHHYKNPYTNKNRAVQKLVNAEVFIGLTGTLVQNNLDEYWSLLNTVQPGCVGRQDDFKRHFTEPILRGRKRGASRADVLLGRERIDE 527
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: UPI00117BE181 (DNA excision repair protein ERCC-6-like 2 n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=UPI00117BE181) HSP 1 Score: 84.7 bits (208), Expect = 6.190e-17 Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 1
Query: 7 IDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEANAEAV 288
+D +W VV DE H KNP + QA ++L +V IGLTGT++QNNL+E WC+M+ Q+GCL +F F+ PI +G ++ A AV
Sbjct: 246 LDQFNSIDWSAVVVDEAHKIKNPNSQITQAMKEL-RCQVRIGLTGTILQNNLEELWCVMDWAQSGCLGSLGHFKNKFSDPIEQGQRHSATKRAV 338
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: UPI0009A3C3F5 (DNA excision repair protein ERCC-6-like 2 isoform X1 n=3 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A3C3F5) HSP 1 Score: 82.8 bits (203), Expect = 2.930e-16 Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 1
Query: 7 IDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEA 273
+D + FEW V DE H KNPK QA K + ++ IGLTGT++QNN+DE WC+M+ GCL +R F E F PI G ++ A
Sbjct: 257 LDDINCFEWSAVFVDEAHKIKNPKAQITQAL-KALKCKIRIGLTGTILQNNMDELWCVMDWAIPGCLGNRARFKEEFCNPIEFGQRHTA 344
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: UPI00148C7EBF (DNA excision repair protein ERCC-6-like 2 n=3 Tax=Hippoglossus TaxID=8266 RepID=UPI00148C7EBF) HSP 1 Score: 81.6 bits (200), Expect = 7.460e-16 Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 1
Query: 4 SIDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEANAEAV 288
S+D +W VV DE H KNPK+ QA +++ +V IGLTGT++QNNL+E WC+M+ GCL + +F F+ PI +G ++ A+
Sbjct: 258 SLDQFNNIDWSAVVVDEAHKIKNPKSQITQAMKEM-KCKVRIGLTGTILQNNLEELWCVMDWAIPGCLGNLGHFKNKFSDPIEQGQRHSVTKRAL 351
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: UPI001BD49BEA (DNA excision repair protein ERCC-6-like 2 n=1 Tax=Cheilinus undulatus TaxID=241271 RepID=UPI001BD49BEA) HSP 1 Score: 81.3 bits (199), Expect = 1.020e-15 Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 1
Query: 4 SIDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEANAEAV 288
S+D +W V+ DE H KNP + QA ++L +V IGLTGT++QNNL+E WC+M+ GCL + +F F+ PI +G ++ A A+
Sbjct: 246 SLDQFNNIDWSAVIVDEAHKIKNPNSQITQAMKEL-RCKVRIGLTGTILQNNLEELWCVMDWAIPGCLGNLGHFKNKFSDPIEQGQKHSATKRAL 339
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: UPI001CD8C6F0 (DNA excision repair protein ERCC-6-like 2 isoform X1 n=2 Tax=Solea senegalensis TaxID=28829 RepID=UPI001CD8C6F0) HSP 1 Score: 81.3 bits (199), Expect = 1.020e-15 Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 1
Query: 7 IDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEANAEAV 288
+D +W VV DE H KNP + QA ++L+ ++ IGLTGT++QNNL+E WC+M+ + GCL +F F+ P+ G ++ A A+
Sbjct: 254 LDQFNNIDWSAVVVDEAHKIKNPNSQITQAMKELI-CKIRIGLTGTILQNNLEELWCVMDWARPGCLGSLGHFKNKFSDPVEHGQRHSATKRAL 346
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: A0A8J6FFJ7_ELECQ (Uncharacterized protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6FFJ7_ELECQ) HSP 1 Score: 80.9 bits (198), Expect = 1.370e-15 Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 1
Query: 7 IDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEA 273
+D L EW V+ DEVH KNPK + K + ++ IGLTGT++QNN++E WC+M+ GCL R F E ++ PI G ++ A
Sbjct: 278 LDDLNSIEWSAVIVDEVHKIKNPKA-RVTEVMKALRCKIRIGLTGTILQNNMEELWCVMDWAVPGCLGGRTQFIEEYSHPIELGQRHNA 365
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: A0A667XQU1_9TELE (ERCC excision repair 6 like 2 n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667XQU1_9TELE) HSP 1 Score: 80.9 bits (198), Expect = 1.390e-15 Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 1
Query: 7 IDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEANAEAV 288
+D +W V+ DE H KNP + QA + L +V IGLTGT++QNNL+E WC+M+ GCL +F F+ PI +G +Y A A+
Sbjct: 252 LDQFNSVDWSAVIVDEAHKIKNPNSQITQAMKDL-KCQVRIGLTGTILQNNLEELWCVMDWAIPGCLGSLGHFKSRFSDPIEKGQRYSATKRAL 344
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: UPI001CF17D00 (DNA excision repair protein ERCC-6-like 2 isoform X4 n=1 Tax=Bufo gargarizans TaxID=30331 RepID=UPI001CF17D00) HSP 1 Score: 80.5 bits (197), Expect = 1.830e-15 Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 7 IDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEA 273
+D L EW V+ DEVH KNPK + A K + ++ IGLTGT++QNN++E WC+++ GCL ++ F E ++ PI G ++ A
Sbjct: 264 LDDLNSVEWSAVIVDEVHKIKNPKA-RVTGAMKALRCKIRIGLTGTILQNNMEELWCVVDWAVPGCLGGKKQFIEEYSHPIELGQRHNA 351
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Match: A0A672GEA1_SALFA (Excision repair cross-complementation group 6-like 2 n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672GEA1_SALFA) HSP 1 Score: 80.5 bits (197), Expect = 1.860e-15 Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 1
Query: 7 IDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIQNNLDEFWCIMNMIQNGCLNHREYFTEHFTTPILRGMQYEANAEAV 288
++ EW VV DE H KNP +L QA ++L + +V IGLTGT++QNNL+E WC+M+ GCL +F F+ PI +G ++ A ++
Sbjct: 250 LEQFNKIEWCAVVVDEAHKIKNPNSLITQAMKEL-ECKVRIGLTGTILQNNLEELWCVMDWAIPGCLGTLGHFKTQFSDPIEQGQRHSATKRSL 342 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12090.1810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12090.1810.1 >prot_H-canaliculatus_F_contig12090.1810.1 ID=prot_H-canaliculatus_F_contig12090.1810.1|Name=mRNA_H-canaliculatus_F_contig12090.1810.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=105bp RSIDTLAGFEWLIVVFDEVHLYKNPKTLKAQAAEKLVDAEVFIGLTGTLIback to top mRNA from alignment at H-canaliculatus_F_contig12090:2092..3505- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12090.1810.1 ID=mRNA_H-canaliculatus_F_contig12090.1810.1|Name=mRNA_H-canaliculatus_F_contig12090.1810.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1414bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12090:2092..3505- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12090:2092..3505- >mRNA_H-canaliculatus_F_contig12090.1810.1 ID=mRNA_H-canaliculatus_F_contig12090.1810.1|Name=mRNA_H-canaliculatus_F_contig12090.1810.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=630bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12090:2092..3505- (Hapterophycus canaliculatus Oshoro5f female)back to top |