mRNA_H-canaliculatus_F_contig1204.1782.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 278 bits (711), Expect = 2.860e-84 Identity = 137/207 (66.18%), Postives = 164/207 (79.23%), Query Frame = 2
Query: 2 YLTIAGNEVYNNVNHGIIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPPWIGDGRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEFSGTKEIEFNDAQDTKLSGNSFPSGTCLINQYDSSTFSSSSGVPNEC 622
YL IAGN+VYNNVNHGIIASKRCNN++IY+NEV DGG + GIFLHRS DD EVY N ITNM DAGIA++E+ DIHDN VDG EFGIR++LG+ NNKV+DN F +I NVG FTY G+D PW+G GRP DN+FY+N I T G+K+KESD+ISI NN FSGT EIEFN+A D SGNS P+ TCL + ++STF+ SSG+P EC
Sbjct: 241 YLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVGGGRPCDNEFYNNTIQATETGVKIKESDNISITNNAFSGTTEIEFNNAIDIVWSGNSIPTNTCLEDIDNNSTFTGSSGLPLEC 447
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 257 bits (657), Expect = 4.560e-76 Identity = 128/210 (60.95%), Postives = 160/210 (76.19%), Query Frame = 2
Query: 11 IAGNEVYNNVNHGIIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPPWIGDGRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEFSGTKEIEFNDAQDTKLSGNSFPSGTCLIN-------QYDSSTFSSSSGVPNE 619
+A N+VYNN NHGIIASKRCNN++IY+N+V DGGP+ VGIFLHRS+D+ EVY N I NM DAGIA++ESFNADIHDN +DG +FGIRM+LG+G N VYDN FND + G +TY G+D P + +GRP N F +N +T++A G+K K SD+I + NNEF+GT+E+EF DAQ T SGNS PSG C+ N STFSSSSGVP+E
Sbjct: 254 VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVSNGRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGTEELEFYDAQATTWSGNSLPSGVCIDNITSDDGNSVPPSTFSSSSGVPSE 463
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 212 bits (539), Expect = 6.240e-56 Identity = 106/204 (51.96%), Postives = 139/204 (68.14%), Query Frame = 2
Query: 2 YLTIAGNEVYNNVNHGIIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPPWIGDGRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEFSGTKEIEFNDAQDTKLSGNSFPSGTCLINQYDSSTFSSSSGVP 613
YLTIA NEVYNNVNHGIIASKRCNN++I+ NEVRDGG GIFLHRS+D V++N ITNMQDAGIA++ESF+A I+ N+++GA++GIRM+LG+GNN+VY N+F DI G +TY G+D P + DGRP N N++ D +G+K+KE D N F EF ++ +T SGN G C+ + S S +P
Sbjct: 681 YLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVSDGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFINVDAFEFPESTNTMWSGNDIGDG-CIEEDDEFDAASGSDSIP 883
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 188 bits (477), Expect = 2.200e-49 Identity = 94/176 (53.41%), Postives = 125/176 (71.02%), Query Frame = 2
Query: 50 IIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPPWIG--DGRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEFSGTKEIEFNDAQDTKLSGNSFPSGTCLIN 571
IIASKRCNN+QIYNNEV DGGP GIFLHRS+D V++NV+ +MQDAG+A++ES NADI++N +FGIR++LG+ N V++N F D+ G +TY G+D P G DGRP DN F +N I + G+K+KE D I +N F+GT E+EF DAQ+T+ GN+ P G C+ N
Sbjct: 322 IIASKRCNNVQIYNNEVYDGGPFAAGIFLHRSSDYAIVHDNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTSELEFFDAQNTRWKGNTLPQGVCIKN 497
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI) HSP 1 Score: 177 bits (450), Expect = 7.380e-45 Identity = 96/196 (48.98%), Postives = 130/196 (66.33%), Query Frame = 2
Query: 5 LTIAGNEVYNNVNHGIIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPPWI--GDGRPYDNKFYDNIITDTA--VGIKLKESDSISIMNNEFSGTKEIEFNDAQDTKLSGNSFPSGTCLINQYD 580
LTI+ N VY N NHGIIASKRCNN++I+NNEV DGG + VGIFLHRS+D EV++NV+ NMQDAG+A+MES++A+I+DN +GIR++LG+G N + +N F+ I G +TY G+D P + +GRP DN F N I +G+ +KE DS ++N F+G EF D+ DT N+ G CL D
Sbjct: 430 LTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFEDSSDTTWVDNT--GGGCLDGSTD 623
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: D8LDB5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB5_ECTSI) HSP 1 Score: 166 bits (420), Expect = 4.970e-40 Identity = 92/214 (42.99%), Postives = 131/214 (61.21%), Query Frame = 2
Query: 5 LTIAGNEVYNNVNHGIIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPP-----WIGDGRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEF---SGTKEIEFNDAQDTKLSGNSFPSGTCLINQYDSSTFSSSSGVPNEC 622
L IA N V+ N NHGIIASKRCNN++I++N V DGG VGIFLHRS+DDCEV+ N + +M+DAG+AIMES A I+DN ++GIR+++GA N V +N F++ G +TY G D P W DG DN F+ N + G+K+++++ I+ +N+F S +E F D +D + N P G CL ++ F S +P+ C
Sbjct: 698 LEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWENTVYDMEDAGMAIMESMGAHIYDNTFTNVKYGIRLSVGASRNVVENNKFSECDQYGIYTYQGNDEPEASKDW--DGLLVDNTFHANTVEG---GVKIQKAEGIAFTDNKFYEHSSGEEYRFEDCEDVVWTNNLVPDGICLKGDDNTDYFKSYDSLPDTC 906
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE) HSP 1 Score: 155 bits (392), Expect = 3.480e-39 Identity = 84/181 (46.41%), Postives = 109/181 (60.22%), Query Frame = 2
Query: 2 YLTIAGNEVYNNVNHGIIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPPWIGD-GRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEFSGTKEIEFNDAQDTKLSGN 541
+LTI NEVYNN NHGIIASKRCN G + VGIFLHRS+DD V +N + DAG+A+MESFNAD+ +N + ++G+RM++G +N N +D +TY G+D PW+ D GR DN F DN IT IKL +D ++N F K + F DAQDT +SGN
Sbjct: 117 FLTIHDNEVYNNGNHGIIASKRCNGXXXXXXXXXXGSSKSVGIFLHRSSDDAIVKDNYXXDNGDAGMALMESFNADVSNNKFEDNKYGVRMSVGCADNVFSKNVISDSSEYNVYTYEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKSAKTVRFEDAQDTIMSGN 297
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 159 bits (402), Expect = 9.220e-38 Identity = 91/214 (42.52%), Postives = 126/214 (58.88%), Query Frame = 2
Query: 5 LTIAGNEVYNNVNHGIIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPP-----WIGDGRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEF---SGTKEIEFNDAQDTKLSGNSFPSGTCLINQYDSSTFSSSSGVPNEC 622
L IA N V+ N NHGIIASKRCNN++I++N V DGG VGIFLHRS+DDCEV+ N + +M+DAG+AIMES A IHDN ++GIR+++GA N V +N+F + G +TY G D P W DG DN F+ N + G+K+++++ I +N F S +E F D +D + N P CL + S +P+ C
Sbjct: 637 LEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWGNTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDW--DGLLVDNTFHANTVEG---GVKIQKAEGIVFTDNNFYEHSSGEEYRFEDCEDVVWTNNRVPDDICLKGDKNIDYMKSYDSLPDLC 845
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: Q7XAK0_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK0_9PHAE) HSP 1 Score: 137 bits (346), Expect = 2.440e-33 Identity = 74/181 (40.88%), Postives = 105/181 (58.01%), Query Frame = 2
Query: 2 YLTIAGNEVYNNVNHGIIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPP-WIGDGRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEFSGTKEIEFNDAQDTKLSGN 541
+LT+ NEVY+N HGIIASKRCN + I NEV G GIFL+RS+DD V N + + DAG+A+MESFNAD+ DN+ + ++G+R+++G G N N + ++Y G D P + GR DN F +N I +K+ ++D + N F I F+DA T +SGN
Sbjct: 58 FLTVHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGASSSAGIFLYRSSDDAVVKGNYVHDNGDAGLAMMESFNADVSDNIFENNKYGVRISVGCGRNIFSKNVISGSTKYNAYSYLGTDAPDVVKSGRSKDNCFQENTIVGGIETLKIMDADGTEFIGNSFEDAVTIRFDDAARTVMSGN 238
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE) HSP 1 Score: 140 bits (354), Expect = 1.160e-32 Identity = 80/181 (44.20%), Postives = 105/181 (58.01%), Query Frame = 2
Query: 2 YLTIAGNEVYNNVNHGIIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPPWIGD-GRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEFSGTKEIEFNDAQDTKLSGN 541
+LTI NEV+NN HGIIASKRCN + I NEV G GIFLHRS+D+ V N + + DAG+A++ESFNAD+ DN + ++G+R+++G G N N F+Y GAD P + D GR DN F +N I I LKE+D ++N F I F DA T +SGN
Sbjct: 265 FLTIHDNEVWNNGYHGIIASKRCNGVSIQGNEVYGGSSGSAGIFLHRSSDNGIVKGNYVHDNGDAGLAMLESFNADVSDNTFENNKYGVRLSVGCGRNIFSKNVITGSAEFNTFSYLGADKPEVVDSGRSQDNVFMENNIIGGVESILLKEADGTQFIDNTFKDAAAIRFVDATKTLMSGN 445 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1204.1782.1 >prot_H-canaliculatus_F_contig1204.1782.1 ID=prot_H-canaliculatus_F_contig1204.1782.1|Name=mRNA_H-canaliculatus_F_contig1204.1782.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=147bp MQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVback to top mRNA from alignment at H-canaliculatus_F_contig1204:14054..17737- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1204.1782.1 ID=mRNA_H-canaliculatus_F_contig1204.1782.1|Name=mRNA_H-canaliculatus_F_contig1204.1782.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3684bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1204:14054..17737- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1204:14054..17737- >mRNA_H-canaliculatus_F_contig1204.1782.1 ID=mRNA_H-canaliculatus_F_contig1204.1782.1|Name=mRNA_H-canaliculatus_F_contig1204.1782.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=882bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1204:14054..17737- (Hapterophycus canaliculatus Oshoro5f female)back to top |