mRNA_H-canaliculatus_F_contig1204.1782.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1204.1782.1
Unique NamemRNA_H-canaliculatus_F_contig1204.1782.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 2.860e-84
Identity = 137/207 (66.18%), Postives = 164/207 (79.23%), Query Frame = 2
Query:    2 YLTIAGNEVYNNVNHGIIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPPWIGDGRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEFSGTKEIEFNDAQDTKLSGNSFPSGTCLINQYDSSTFSSSSGVPNEC 622
            YL IAGN+VYNNVNHGIIASKRCNN++IY+NEV DGG +  GIFLHRS DD EVY N ITNM DAGIA++E+   DIHDN VDG EFGIR++LG+ NNKV+DN F +I NVG FTY G+D PW+G GRP DN+FY+N I  T  G+K+KESD+ISI NN FSGT EIEFN+A D   SGNS P+ TCL +  ++STF+ SSG+P EC
Sbjct:  241 YLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVGGGRPCDNEFYNNTIQATETGVKIKESDNISITNNAFSGTTEIEFNNAIDIVWSGNSIPTNTCLEDIDNNSTFTGSSGLPLEC 447          
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 4.560e-76
Identity = 128/210 (60.95%), Postives = 160/210 (76.19%), Query Frame = 2
Query:   11 IAGNEVYNNVNHGIIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPPWIGDGRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEFSGTKEIEFNDAQDTKLSGNSFPSGTCLIN-------QYDSSTFSSSSGVPNE 619
            +A N+VYNN NHGIIASKRCNN++IY+N+V DGGP+ VGIFLHRS+D+ EVY N I NM DAGIA++ESFNADIHDN +DG +FGIRM+LG+G N VYDN FND  + G +TY G+D P + +GRP  N F +N +T++A G+K K SD+I + NNEF+GT+E+EF DAQ T  SGNS PSG C+ N           STFSSSSGVP+E
Sbjct:  254 VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVSNGRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGTEELEFYDAQATTWSGNSLPSGVCIDNITSDDGNSVPPSTFSSSSGVPSE 463          
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 6.240e-56
Identity = 106/204 (51.96%), Postives = 139/204 (68.14%), Query Frame = 2
Query:    2 YLTIAGNEVYNNVNHGIIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPPWIGDGRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEFSGTKEIEFNDAQDTKLSGNSFPSGTCLINQYDSSTFSSSSGVP 613
            YLTIA NEVYNNVNHGIIASKRCNN++I+ NEVRDGG    GIFLHRS+D   V++N ITNMQDAGIA++ESF+A I+ N+++GA++GIRM+LG+GNN+VY N+F DI   G +TY G+D P + DGRP  N    N++ D  +G+K+KE D      N F      EF ++ +T  SGN    G C+    +    S S  +P
Sbjct:  681 YLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVSDGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFINVDAFEFPESTNTMWSGNDIGDG-CIEEDDEFDAASGSDSIP 883          
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 2.200e-49
Identity = 94/176 (53.41%), Postives = 125/176 (71.02%), Query Frame = 2
Query:   50 IIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPPWIG--DGRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEFSGTKEIEFNDAQDTKLSGNSFPSGTCLIN 571
            IIASKRCNN+QIYNNEV DGGP   GIFLHRS+D   V++NV+ +MQDAG+A++ES NADI++N     +FGIR++LG+  N V++N F D+   G +TY G+D P  G  DGRP DN F +N I +   G+K+KE D   I +N F+GT E+EF DAQ+T+  GN+ P G C+ N
Sbjct:  322 IIASKRCNNVQIYNNEVYDGGPFAAGIFLHRSSDYAIVHDNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTSELEFFDAQNTRWKGNTLPQGVCIKN 497          
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 7.380e-45
Identity = 96/196 (48.98%), Postives = 130/196 (66.33%), Query Frame = 2
Query:    5 LTIAGNEVYNNVNHGIIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPPWI--GDGRPYDNKFYDNIITDTA--VGIKLKESDSISIMNNEFSGTKEIEFNDAQDTKLSGNSFPSGTCLINQYD 580
            LTI+ N VY N NHGIIASKRCNN++I+NNEV DGG + VGIFLHRS+D  EV++NV+ NMQDAG+A+MES++A+I+DN      +GIR++LG+G N + +N F+ I   G +TY G+D P +   +GRP DN F  N I      +G+ +KE DS   ++N F+G    EF D+ DT    N+   G CL    D
Sbjct:  430 LTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFEDSSDTTWVDNT--GGGCLDGSTD 623          
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: D8LDB5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB5_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 4.970e-40
Identity = 92/214 (42.99%), Postives = 131/214 (61.21%), Query Frame = 2
Query:    5 LTIAGNEVYNNVNHGIIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPP-----WIGDGRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEF---SGTKEIEFNDAQDTKLSGNSFPSGTCLINQYDSSTFSSSSGVPNEC 622
            L IA N V+ N NHGIIASKRCNN++I++N V DGG   VGIFLHRS+DDCEV+ N + +M+DAG+AIMES  A I+DN     ++GIR+++GA  N V +N F++    G +TY G D P     W  DG   DN F+ N +     G+K+++++ I+  +N+F   S  +E  F D +D   + N  P G CL    ++  F S   +P+ C
Sbjct:  698 LEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWENTVYDMEDAGMAIMESMGAHIYDNTFTNVKYGIRLSVGASRNVVENNKFSECDQYGIYTYQGNDEPEASKDW--DGLLVDNTFHANTVEG---GVKIQKAEGIAFTDNKFYEHSSGEEYRFEDCEDVVWTNNLVPDGICLKGDDNTDYFKSYDSLPDTC 906          
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 3.480e-39
Identity = 84/181 (46.41%), Postives = 109/181 (60.22%), Query Frame = 2
Query:    2 YLTIAGNEVYNNVNHGIIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPPWIGD-GRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEFSGTKEIEFNDAQDTKLSGN 541
            +LTI  NEVYNN NHGIIASKRCN           G  + VGIFLHRS+DD  V +N   +  DAG+A+MESFNAD+ +N  +  ++G+RM++G  +N    N  +D      +TY G+D PW+ D GR  DN F DN IT     IKL  +D    ++N F   K + F DAQDT +SGN
Sbjct:  117 FLTIHDNEVYNNGNHGIIASKRCNGXXXXXXXXXXGSSKSVGIFLHRSSDDAIVKDNYXXDNGDAGMALMESFNADVSNNKFEDNKYGVRMSVGCADNVFSKNVISDSSEYNVYTYEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKSAKTVRFEDAQDTIMSGN 297          
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 9.220e-38
Identity = 91/214 (42.52%), Postives = 126/214 (58.88%), Query Frame = 2
Query:    5 LTIAGNEVYNNVNHGIIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPP-----WIGDGRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEF---SGTKEIEFNDAQDTKLSGNSFPSGTCLINQYDSSTFSSSSGVPNEC 622
            L IA N V+ N NHGIIASKRCNN++I++N V DGG   VGIFLHRS+DDCEV+ N + +M+DAG+AIMES  A IHDN     ++GIR+++GA  N V +N+F +    G +TY G D P     W  DG   DN F+ N +     G+K+++++ I   +N F   S  +E  F D +D   + N  P   CL    +     S   +P+ C
Sbjct:  637 LEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWGNTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDW--DGLLVDNTFHANTVEG---GVKIQKAEGIVFTDNNFYEHSSGEEYRFEDCEDVVWTNNRVPDDICLKGDKNIDYMKSYDSLPDLC 845          
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: Q7XAK0_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK0_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 2.440e-33
Identity = 74/181 (40.88%), Postives = 105/181 (58.01%), Query Frame = 2
Query:    2 YLTIAGNEVYNNVNHGIIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPP-WIGDGRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEFSGTKEIEFNDAQDTKLSGN 541
            +LT+  NEVY+N  HGIIASKRCN + I  NEV  G     GIFL+RS+DD  V  N + +  DAG+A+MESFNAD+ DN+ +  ++G+R+++G G N    N  +       ++Y G D P  +  GR  DN F +N I      +K+ ++D    + N F     I F+DA  T +SGN
Sbjct:   58 FLTVHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGASSSAGIFLYRSSDDAVVKGNYVHDNGDAGLAMMESFNADVSDNIFENNKYGVRISVGCGRNIFSKNVISGSTKYNAYSYLGTDAPDVVKSGRSKDNCFQENTIVGGIETLKIMDADGTEFIGNSFEDAVTIRFDDAARTVMSGN 238          
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.160e-32
Identity = 80/181 (44.20%), Postives = 105/181 (58.01%), Query Frame = 2
Query:    2 YLTIAGNEVYNNVNHGIIASKRCNNLQIYNNEVRDGGPEGVGIFLHRSADDCEVYNNVITNMQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNVGFFTYYGADPPWIGD-GRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEFSGTKEIEFNDAQDTKLSGN 541
            +LTI  NEV+NN  HGIIASKRCN + I  NEV  G     GIFLHRS+D+  V  N + +  DAG+A++ESFNAD+ DN  +  ++G+R+++G G N    N          F+Y GAD P + D GR  DN F +N I      I LKE+D    ++N F     I F DA  T +SGN
Sbjct:  265 FLTIHDNEVWNNGYHGIIASKRCNGVSIQGNEVYGGSSGSAGIFLHRSSDNGIVKGNYVHDNGDAGLAMLESFNADVSDNTFENNKYGVRLSVGCGRNIFSKNVITGSAEFNTFSYLGADKPEVVDSGRSQDNVFMENNIIGGVESILLKEADGTQFIDNTFKDAAAIRFVDATKTLMSGN 445          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1204.1782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRR8_ECTSI2.860e-8466.18Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JGU8_9PHAE4.560e-7660.95MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LC73_ECTSI6.240e-5651.96Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
D8LRM4_ECTSI2.200e-4953.41Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D7G8D9_ECTSI7.380e-4548.98Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D8LDB5_ECTSI4.970e-4042.99Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAJ9_9PHAE3.480e-3946.41Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
A0A6H5JNF5_9PHAE9.220e-3842.52MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
Q7XAK0_9PHAE2.440e-3340.88Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAJ8_9PHAE1.160e-3244.20Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1204contigH-canaliculatus_F_contig1204:14054..17737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue1.2e-26
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons6
Model size1665
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1204.1782.1prot_H-canaliculatus_F_contig1204.1782.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1204 15111..16510 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928915.156877-UTR-H-canaliculatus_F_contig1204:14053..145211622928915.156877-UTR-H-canaliculatus_F_contig1204:14053..14521Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1204 14054..14521 -
1696845611.316024-UTR-H-canaliculatus_F_contig1204:14053..145211696845611.316024-UTR-H-canaliculatus_F_contig1204:14053..14521Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1204 14054..14521 -
1622928915.191298-UTR-H-canaliculatus_F_contig1204:14538..151101622928915.191298-UTR-H-canaliculatus_F_contig1204:14538..15110Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1204 14539..15110 -
1696845611.3301628-UTR-H-canaliculatus_F_contig1204:14538..151101696845611.3301628-UTR-H-canaliculatus_F_contig1204:14538..15110Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1204 14539..15110 -
1622928915.2752087-UTR-H-canaliculatus_F_contig1204:16510..165271622928915.2752087-UTR-H-canaliculatus_F_contig1204:16510..16527Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1204 16511..16527 -
1696845611.3700416-UTR-H-canaliculatus_F_contig1204:16510..165271696845611.3700416-UTR-H-canaliculatus_F_contig1204:16510..16527Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1204 16511..16527 -
1622928915.286346-UTR-H-canaliculatus_F_contig1204:17060..171801622928915.286346-UTR-H-canaliculatus_F_contig1204:17060..17180Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1204 17061..17180 -
1696845611.3790016-UTR-H-canaliculatus_F_contig1204:17060..171801696845611.3790016-UTR-H-canaliculatus_F_contig1204:17060..17180Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1204 17061..17180 -
1622928915.302265-UTR-H-canaliculatus_F_contig1204:17690..177371622928915.302265-UTR-H-canaliculatus_F_contig1204:17690..17737Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1204 17691..17737 -
1696845611.3886375-UTR-H-canaliculatus_F_contig1204:17690..177371696845611.3886375-UTR-H-canaliculatus_F_contig1204:17690..17737Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1204 17691..17737 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928915.227266-CDS-H-canaliculatus_F_contig1204:15110..152621622928915.227266-CDS-H-canaliculatus_F_contig1204:15110..15262Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1204 15111..15262 -
1696845611.3387754-CDS-H-canaliculatus_F_contig1204:15110..152621696845611.3387754-CDS-H-canaliculatus_F_contig1204:15110..15262Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1204 15111..15262 -
1622928915.2444005-CDS-H-canaliculatus_F_contig1204:15884..160251622928915.2444005-CDS-H-canaliculatus_F_contig1204:15884..16025Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1204 15885..16025 -
1696845611.3513732-CDS-H-canaliculatus_F_contig1204:15884..160251696845611.3513732-CDS-H-canaliculatus_F_contig1204:15884..16025Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1204 15885..16025 -
1622928915.2623916-CDS-H-canaliculatus_F_contig1204:16362..165101622928915.2623916-CDS-H-canaliculatus_F_contig1204:16362..16510Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1204 16363..16510 -
1696845611.3599591-CDS-H-canaliculatus_F_contig1204:16362..165101696845611.3599591-CDS-H-canaliculatus_F_contig1204:16362..16510Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1204 16363..16510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1204.1782.1

>prot_H-canaliculatus_F_contig1204.1782.1 ID=prot_H-canaliculatus_F_contig1204.1782.1|Name=mRNA_H-canaliculatus_F_contig1204.1782.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=147bp
MQDAGIAIMESFNADIHDNVVDGAEFGIRMNLGAGNNKVYDNTFNDIHNV
GFFTYYGADPPWIGDGRPYDNKFYDNIITDTAVGIKLKESDSISIMNNEF
SGTKEIEFNDAQDTKLSGNSFPSGTCLINQYDSSTFSSSSGVPNEC*
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mRNA from alignment at H-canaliculatus_F_contig1204:14054..17737-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1204.1782.1 ID=mRNA_H-canaliculatus_F_contig1204.1782.1|Name=mRNA_H-canaliculatus_F_contig1204.1782.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3684bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1204:14054..17737- (Hapterophycus canaliculatus Oshoro5f female)
TTATCTTACCATCGCCGGGAATGAAGTTTACAACAACGTGAACCATGGTG AGTTGGAACCGCACAAGATAGTTTGTGCTGTGACATAGACTCTTGTCACC GCTGCACAATTGACGGTTCAATCATCCATCGTCTCACACTAGAAGGATGG GGCATGTGCATTTTTTTTTTTAATGGAGGGGTCTACTTGGGCGTTTTGAA CTCTCCCGTCCGTCAAATGTTTTTGCTCCCTTTGCGCTTCGTGCGATAAG CCTGCGACAACGGTTTTATTTTTGATTTGGCTGGATTTTTGCCGTCGACT TCGTACAACATAGCGGTTCATCGTCGTCCGGGCTCGGACATTATCATATT CACCAGCATGCTATGCTCTTGAAGAGGTTGCGGACACAGTTCCTGGTAAA ATCATGCATTTTGAGCTGCCTTTTTTTGGGGGCTAATCGTCCCCGTAGAA GTCGTGCGAAAGCGAACTCTCTCTCCATTATCTCCTATTCGTTTGGCGCA AGCCCAAAACATGATGTTTTCTTGAGTGTGTTCTGTCCCTGTGTCACGTC GTTGCAGGTATCATCGCCTCCAAGCGCTGTAACAACCTCCAAATTTACAA CAACGAAGTTCGAGACGGCGGGCCGGAAGGTGTAGGCATCTTCCTTCACC GGAGCGCCGACGACTGCGAGGTCTACAGTGAGTCAACGTCGCGACGTCTG ATGCCATTCTTGTTGGGGCAACGGGACACGTCGGGCACTATCTGTATGTA CTATCTGTATATAAACTCTGTCTCGTTGTCTCTTCTCAAACTACCTGTAG GTCTGTCTGTTTTTCTGCCCATTTCTCACTACAGTACCAGGTATGCTTTT GCTCTGCTGGTGCGAAGCCAGCTCTGGCAGGAACACGGCTCAAACCCTTT TATCGTTTTGTGGGCATTTGACGACCGCAAGATTGTGGCTTCCATGGCAG AAACATTGCATTCATCGCTCGTGTCGTCAGTGTGGTGGTGCCAGAATGCC AGAATGCCAGAATGCCAGAATCCCAGCAAAGGGCACGAAGAAGTAGCTGC TTTTGCCCGTCGCGCTTGTCTGATGAGACGGCACGCGAGGTTGTTTAGAA CGCATGAGCGAGGCTCGCGTGCTGTCAAGCGGTTGTGCGGCAGGTCTCTC ATCCACTTCTCCACCCTCGGCATGTTCGCCTGGAATTGTTTCGACCTTCG TGGAACGCAGACAACGTGATCACGAACATGCAGGACGCTGGCATTGCTAT TATGGAGTCTTTCAACGCCGATATTCACGACAACGTCGTCGACGGAGCTG AGTTTGGCATCCGCATGAACCTCGGAGCCGGTAACAACAAGGTGTACGAT AACACTTTCAACGACATCCATAATGGTGAGTGGTGACGAGATGGAGGGGG ATGATGCCAAATATTTCATGGACGTGGATAGCATGTACTCTTGCTGCCAT GATGTTGACATTTATCAGCACGTCGTCCACCACCTCCCAAGTGGATGTGT CGGGGAAACTACTTCAGTTGAGAGTCTTCTGTCGATATCAATGGAGGGCA AGGGCCCATTGGTGCTGCTTGCGAAATTCTTCGCCTCCCAGGTCCCTTGT ATGCTGCCAAAGCCGTGCTCTGCACGCCCAACGCTCCTCTTCATCATATC TTGTGTTTCAACGCTTTGGCGGCCTAAGCACACCCCGTGCGAACACTCCC CGGCTCCCTCAGTTGGCTTCTTCACGTACTACGGGGCCGACCCCCCGTGG ATTGGCGACGGCCGCCCCTACGACAACAAGTTCTACGACAACATAATCAC GGACACTGCCGTTGGCATTAAGCTCAAGGAGTCGGACAGCATCTCGATCA TGAGTGAGGAATCTCTGCGCTTGCCCCTTGAGTATCTGAGTTTGTATTGG ATATTACAGCCATACGTATGTCTGCAAGGGTATATCTTACTACTGAGCTG CGAGATCAACAGGAGTTTATCCTATTGTTTTCCTTGTCCGAGCTCGTTGG TCTGCTTCAAGAAGCGGTGGGCGGTGAAGCACGATTTATTGTTTACAACT TTGTTTTGCTCGGTACGCCACCTGGACCCGTCTCCTGTCAGTGGGTTGAG CGCCTCCTCCCCATCGACCTGTTTTTTGCGGCGGTGTGTCTTTTTGTACT GCCTCAAGAAGCTTGATGCGCAGCCAGGAACGACATGTTGGGCCCAAGAT TTAGCGAAAATGCTAGGAAGGCCACTAACGGAAGGATTGTGCCGACCAAG TGTTAACCGTTAACGCTATCTTGCCGCAAGCACATCTTTTTGCTCGTCCT GTGTACGCATAGTCGCGCGGGGAATCGTCGAGTGTAGGCGACGTGCCAAA TATCACACACGCGCCTCTTCAAGCCTTCAATATTTACAATGAGTTATATC TTTCTGTCCTTTTTCCTTCTCTTGCTTGCCCTGCGCCTACTCGGTACCCT CGTCGCATGCGATGGCAATCCTTAGACAACGAGTTTTCCGGAACGAAGGA GATCGAGTTCAACGACGCGCAGGATACGAAGTTGTCCGGAAACAGTTTCC CCTCGGGAACGTGCCTGATCAACCAGTACGACTCCAGCACGTTCTCAAGT TCTTCGGGCGTGCCCAACGAATGCTAAGTCCCATGTGGCTGTCCCACGCT GGACAATCTTAGTTGGAGTACTGTCGACTAATTTTGCTCTTTCGGATTGA GGTCGACGAAATCGATGAGGATAGGTTTGTATTCGTTTCAGCTCGGCGCT CAGGCGGGATGCTGGAATAGGGGGTACATCACGTGAGCGTGCAGGTTAGA AGCAAAAGTCAACCACGATTCGCCTCTCTGACGGCCGTAGGTCTTCGTGC TGCTGTGTAATTTATGCTGTTTGGGCTGGCTACTTTCTGCTCGGACTTCG AGAAGCGTAAGAGAGCGACGCTTCTTTAGTTCATACGAGTCTTTGAGTCT TCTTCAGATCCTTCGACCTGACGAACCCTCTCTTGCTCAGGCGGCTACAG GTTTTTGCCTGTCGACCGTTTCACCCAAGCTGAGTGATCTCTGTGTTGTG TCGGGTTTGTTTGTGTTCGACTTATTCGTGTTGTTTTAATACAACCCCCT CTTCCCCTTGTTTTAGATAACGACTTACGACGGTTCCTCTTGGGGGGGTC GTCCGTTATCTATCCGTAGCCCCTGGTAAATGGGAAGCTTATGCCCATTG TAACCTTCATACTCAGTGTTTGGTGCGAAGTTGATAGGACGAGGCACACC CCACGTTAGGTACCTGCTAGTACTCTACGGTGGCGAGGCAAATATACTTG CTGGAAGGCGAAATTTTGCGGGAACTTTTCCCTTCCGCTCACGCGAAGAA ATTTAGTATCCTGAGCCATGGATGGGTGAGTGGAGCTGTAAACCCTATCG CTGCCCACTTTTCAGCTAATCTATTGCTCATATTTCTGCGAAGCTTATGC ACCGTAAATGTTGCATGCGCACTCGGTTAAGTCCGCAAGAGGGAGTACCC GTGAAGATCGAAGATCATGCGTCTTGCTGCGTTTCTCTGGATTTGCCTTC GCAGCCTTTGGCTGTTGCAGGGCATGTAGGTACATTTAAATTTTTCCGTT GTTTTGTGCTTTCTCTGCGGTTCGATTCCATGACTCGACGGCCTGCGCTG CCATGTACCTCTCTGGAGAGTATCTATTCTTGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1204:14054..17737-

>mRNA_H-canaliculatus_F_contig1204.1782.1 ID=mRNA_H-canaliculatus_F_contig1204.1782.1|Name=mRNA_H-canaliculatus_F_contig1204.1782.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=882bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1204:14054..17737- (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGGACGCTGGCATTGCTATTATGGAGTCTTTCAACGCCGATATTCA
CGACAACGTCGTCGACGGAGCTGAGTTTGGCATCCGCATGAACCTCGGAG
CCGGTAACAACAAGGTGTACGATAACACTTTCAACGACATCCATAATGAT
GCAGGACGCTGGCATTGCTATTATGGAGTCTTTCAACGCCGATATTCACG
ACAACGTCGTCGACGGAGCTGAGTTTGGCATCCGCATGAACCTCGGAGCC
GGTAACAACAAGGTGTACGATAACACTTTCAACGACATCCATAATGTTGG
CTTCTTCACGTACTACGGGGCCGACCCCCCGTGGATTGGCGACGGCCGCC
CCTACGACAACAAGTTCTACGACAACATAATCACGGACACTGCCGTTGGC
ATTAAGCTCAAGGAGTCGGACAGCATCTCGATCATGATTGGCTTCTTCAC
GTACTACGGGGCCGACCCCCCGTGGATTGGCGACGGCCGCCCCTACGACA
ACAAGTTCTACGACAACATAATCACGGACACTGCCGTTGGCATTAAGCTC
AAGGAGTCGGACAGCATCTCGATCATGAACAACGAGTTTTCCGGAACGAA
GGAGATCGAGTTCAACGACGCGCAGGATACGAAGTTGTCCGGAAACAGTT
TCCCCTCGGGAACGTGCCTGATCAACCAGTACGACTCCAGCACGTTCTCA
AGTTCTTCGGGCGTGCCCAACGAATGCTAAACAACGAGTTTTCCGGAACG
AAGGAGATCGAGTTCAACGACGCGCAGGATACGAAGTTGTCCGGAAACAG
TTTCCCCTCGGGAACGTGCCTGATCAACCAGTACGACTCCAGCACGTTCT
CAAGTTCTTCGGGCGTGCCCAACGAATGCTAA
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