mRNA_H-canaliculatus_F_contig1191.1674.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1191.1674.1
Unique NamemRNA_H-canaliculatus_F_contig1191.1674.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1191.1674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1191contigH-canaliculatus_F_contig1191:49..5856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size1289
Cds size954
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1191.1674.1prot_H-canaliculatus_F_contig1191.1674.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1191 49..1714 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.5806928-CDS-H-canaliculatus_F_contig1191:48..8331622928894.5806928-CDS-H-canaliculatus_F_contig1191:48..833Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1191 49..833 -
1696845604.264324-CDS-H-canaliculatus_F_contig1191:48..8331696845604.264324-CDS-H-canaliculatus_F_contig1191:48..833Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1191 49..833 -
1622928894.5977511-CDS-H-canaliculatus_F_contig1191:1102..11711622928894.5977511-CDS-H-canaliculatus_F_contig1191:1102..1171Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1191 1103..1171 -
1696845604.2731388-CDS-H-canaliculatus_F_contig1191:1102..11711696845604.2731388-CDS-H-canaliculatus_F_contig1191:1102..1171Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1191 1103..1171 -
1622928894.6170638-CDS-H-canaliculatus_F_contig1191:1614..17141622928894.6170638-CDS-H-canaliculatus_F_contig1191:1614..1714Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1191 1615..1714 -
1696845604.281695-CDS-H-canaliculatus_F_contig1191:1614..17141696845604.281695-CDS-H-canaliculatus_F_contig1191:1614..1714Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1191 1615..1714 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.6348531-UTR-H-canaliculatus_F_contig1191:1714..17441622928894.6348531-UTR-H-canaliculatus_F_contig1191:1714..1744Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1191 1715..1744 -
1696845604.2901108-UTR-H-canaliculatus_F_contig1191:1714..17441696845604.2901108-UTR-H-canaliculatus_F_contig1191:1714..1744Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1191 1715..1744 -
1622928894.646115-UTR-H-canaliculatus_F_contig1191:5551..58561622928894.646115-UTR-H-canaliculatus_F_contig1191:5551..5856Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1191 5552..5856 -
1696845604.2984188-UTR-H-canaliculatus_F_contig1191:5551..58561696845604.2984188-UTR-H-canaliculatus_F_contig1191:5551..5856Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1191 5552..5856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1191.1674.1

>prot_H-canaliculatus_F_contig1191.1674.1 ID=prot_H-canaliculatus_F_contig1191.1674.1|Name=mRNA_H-canaliculatus_F_contig1191.1674.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=318bp
MEWRSRRKRGFASTPPSSTRFLVAPVELFLLLSGPAQAGPTRVKNMDAPS
PAPSVPGLASSSSPTADEIAPEATPDPQETVQPRPPLRSMPPGEAPSASS
PESSDDFGGFGIAAIVTASVVSVFLLAALVLTCVWLKSHCAEKGKSIRRS
LEELIGKGSLWGAILVVVGLMVALNAYTVSMLWTVVSVFGTFVMCFGIVA
WFIAFQTGSPAVVSLELPRRSAPTSVRSDSGERSGGGGGSGRSIASNSTC
ETPRGCSFAASPTVTDLPSWGKGDSLRQSPAADAPASPARGAADSFFPDT
YVRAVYIPAHSVDGLQP*
back to top

mRNA from alignment at H-canaliculatus_F_contig1191:49..5856-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1191.1674.1 ID=mRNA_H-canaliculatus_F_contig1191.1674.1|Name=mRNA_H-canaliculatus_F_contig1191.1674.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5808bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1191:49..5856- (Hapterophycus canaliculatus Oshoro5f female)
CCCTTTCGGCCGCTGCGGGCAAAAGCGGAATTTAACACGAAACACACAAC
CCACAACCTCTCGACATACGCCGCGCTGTCCCGAAACCTCTCGTGTTCCT
GTTCACCTCCACCCCCCGCTATTTTCTCTAACCGCCACCTCAACGCCCGT
GCTTCCACCTGGTGACGAGGCTCGGAAAGGCGGTGACGTTTCTTGCGGAC
GAATTCTACAGCAGCTGCCGATAGACGGGCCGTTGGTTTCAAGCTTCAAG
CGCAGCAAAAACCGCAACGCACAATCGACGAAGGCTCTACGCCTGCTCCT
TCGAGGTGAGACCAGCCCTTCACAGAGCTGGCCTAAAGCTTCTGGCAGTT
GGGTTCTGGTGTTGTGGATCGTGGCCTCTCGTTGCTTCCGTACCTTTTGT
TCCAGGACAGCAGCAGCAAGAACGTAAGAACATGGAAAAAATGCGGTTTG
GTCTGGATCAACGGGTTGGGCGTGTCTCCGCGAGTCGCACCACCGATGGA
CAGCCAGCCCCGCATACCATCGTCGTCGAGGGATCAGAAACCCAGGAACC
ATGATCCTAGGGAACCCACACCGCCTTTGCCTTTTGAGGGCGGTAACGTA
TTGCGGCACTGCCCCGTAAGAAAGAGGCCAGGTGTGCATCAGGACTCATG
ACACAAGCCGCAACAGCTCTCTTCGATGGAGCACGTGCTCCTTGGTTATC
AGCTGGTTATCAGTCTCCAGAACCCACGACTCAACACCAAAAAAAAATTA
GTGATAGTTGTTACAGTCAGTCATGGAGCAGGGTACGTGCGATTCCGCGG
AGAACTTTTCACGCGATGGTCTTTCGCGTTTTCGACAACCCCTCAACGTC
ACATCAGACGTACGATCTGGACTACTCTTCACTCTTTTATCGCCCACGGA
GAGTCGAACTACATGCTCTGTACATCATCGAGAGTTAGGAAGAGAGTACT
CGAACATAGATGGTCGTCCATGGTCAGGCCGAAAAGATTCAACCGCTTTT
TCCCGTGTACAAAATTTTCGCTGCAGCCATTGGCGTCTGTTGTAACAGTA
ATTTTACTTCTGCAATCTCCCCTTAACCGTATATCATGCAACTTTTGTGG
AAGCGCACACAAGCAGGCGCGACGTTGCAGCCAATTCGTCTCTACTTTGA
TACTGAAGGCAGCATTCAAGGGTATTTGGATATTAAGGGACAGCCGGGGA
CAGCCAGGGACAGCCGAAAACGAAAGAGCTTGGATCAGGGGATGGAATCA
CGAGCTTCACCGCGGCATATCCGTCTTTCCGGTGGGGGTGGCGGTTTTCT
TTGCCGCCGGACGCGATGTGTGGTTTTCTGGCACAGCATTAGCTTGCGAT
CCCTCTCCGCGAGGAGCATCCATTTGTTTGTCCTTGAATCTACCGTCCAC
TGCGCTGGTCCAAAGCTTCAAATTCCAAAGCCACCGAGATTAACCTGAAG
TACTCGTACACAAACTCTCCTCGTTCGTCGGCCGCAGTTGATGACCTTAT
GAATGAGCCACAGGAAGATGCGACAGGCATACCGCAGTACGTACGTATGC
ATTATGTGTACGTTTGTATTTCTTACGTACGTACATTTATGAGCTGAATA
GAAGCGACCAAGTCAATCGAAAGCGCAAAAATAAAAAATAAAACGTCAGA
TAACGCTGTGTACGGCTTCTTCACGCAACTCGGAATATTTGGGGGGTGGT
GTGTATCGCGTGCTTACGTACGCGTTTCAGAGCAAGACACGAAAGCCCTG
ACTTCGAGAGAGCACGAGAAATGGCGGACGCTCTGCCCCCCCTCATATCT
TAAGAGGAACCGCCCCTTTCTATCCTTGAGCCGCGACTGGCTCGATATTT
CAGGATATGTTCAGCCGATTGGTTTACAGCTCGTGTCGCGTCATTGCCCT
TCCACTGCTGTGTCAACTTATCGCCGTGTTCGTATTCGACGAAAGGAACC
ATCCATAGCCCTTATGCCCTTCAAGAGGCAGAACGCTCACTAATTACCGG
GCGCGTAGCGGAAATTTAGTGAAACCCTTTCCCTTTCCCCCTGGATGACG
TCGGGGGGGCAGTAAGAACGAACGGAACCCTGCGTCAGTATGTGGTGTCC
ATCAACTCGATGTTCGTGGGACCTATCATGAACAAACAGAAAGATACCGA
ACACTGATTTGTTCGAAAGGGATCAACCCATAGCGTATTTATCGGGGTCG
TACTAACATTGAATACTCTTTGGATGCTTTCGTTCTAAGCTTTTGCCCGT
GGTCATCCCTGTAGAAGATTTCATTCCCATAATTTCCGGAGAGGGGTGCA
AGATGCCAACGCTTGCCAAGATAGCCGATTCGCGCGGCGATCGAACACAG
TAGCTTGGTCTTAACTTTTATCGCACGAGGGTGTGCGATAACTCCGATCT
GTGATTAATTCCGGTTGAAACAAAGCGGAAACACGGTCAAGGGTTTTTAG
ATCGCACACCTGTGCAAATGCTCCGAAATTCGTGACCCTGGACACATCAC
AGCGGACATACCAACCAGCGCTTCGTGTGTGTTGCTGCAACGAGATCCCC
ACGTAGGTGTCTCACAACACAACGGCGGCACACCGACCTACACTCATGCA
CTGAAAACGCGGAAATAGAGAGCGGCGGAACAAAAAATCCAGGCGGAGAA
TGGGCGGGGAATTAGCCCTTCCAACGTTCCTTGGCAACAGGTCGAATATA
ATCTCCCCATATCCTAGACATTTTTGTGAGAAAAGTGGTGGCGGCCGTCT
TGTAGGTTTTACGCGTTCTTGGGTAATTGGGCACCGTTTGCCAAATGCGA
TGACATTCAACAACAATGAAATGGCCTTGTCTGAACGCCACGGTGCACAT
GTAACGCAACGGCACCCTCAGCATTCCAACGCAAAATGCTAAACACCACT
CAAAGTCAACGTGGCCCCACCATACCGGAAGCATCGGGGTCTTTGGCAGC
CCTTTACCAAGAAGAAAATCCCTGCCGTGATCAGGTTAACAATTAATCGA
GTGAAACAAAGTTGCATAAGACCCCACCCCCGCATTTTTACGCTCATGTA
CTTGTCCCAACCATGCACAATGAACCCTCACGGTTTGAAACTCAATAGAA
GCCACGAGCTACGCCTCGCACGACTCACCTCAGGAGGTGCTCCTACGGTG
CTATTATGCTTTCATTTACAATTGAATATCGCTTCCTTCCCGCGCCCGTA
TGCCACGACTCCGACCCCGCGCCATGAGACCGATCCATGCCGAGACCCCG
ATTCTTGCGGTAGCAATCGGAATATCTCACGTGCGTATGAACATTTATCA
GTTTTTCAAGCTACAGTGCTTTATTTCGCCGATTCCCTCGAGAACAAGAA
ATTGCGCTCGAAAGCCCCGTCATCCAATTTATCTGTTTGTTCCGCTGGCT
GTACGGTGGCGCATTGGTTTGTGCTGTCTGCGCTGGCCCCGTCCCCGCGT
GTGTCGACGTTTACCCAGCCCTTGCTAGCTGATCCCTAGCCCGTTCATGA
TACCTGTCGCCTCCTGGCTGGCGACGTGACCTCATGAAGAAGAGGGGTAA
AAAACACCGAAGGGGTGCCCTCTAAGACAGGGATGAGGCGGATTGTGTTG
GAAGTCTTTGCAGTCAGGGTTCAGTGCGCCGGCGTGTGGAGAAAGACATC
GCTAGAAGTAGAGAAGGTCGTGAGACTCTTCTGGCGAACTATTTTCAGAG
GTCGACTTCAAAGTTCGGTGTAGAATGCTTTGTTTCATCGCATGCATGTT
ACAGAACGTTTCGTCTATGTGCGCTGGTCCTTGGTGTTCCACGATGCCAC
GGACCACTCTCTCGAGGCGGTGGGTTGCAAGCAAGACTGAGAAACACTGT
TTTTGAGCGCCCACTGTAGGTGCCCGTTCGCGGACAACCGGACCCTAACG
TCGTGTCTCGGCCGTGCCCGCTCACCCGGAGCCGCAATTAGTGAGCGGCA
GCATACAGAGGTAATCTCACGTCATCACACAAGCGCACCACTGTCTGGAC
ACGAAGTAGAGCAATGCCAACGACAAAATTTCTCCTCTCATAGACTTGAC
GCCTGGCCCCCGAACCCCCCCCCCGTCGTACTTCACCACCCATTGACGTG
CTTCTATGGCAGCCTCCAGCGGGAGCAGCACGAAATAGGCCTATGGAATG
GCGAAGCAGACGAAAGCGGGGTTTCGCTTCAACCCCTCCTTCTTCGACGA
GATTTTTGGTGGCTCCTGTGGAATTATTCCTGCTCTTGTCCGGTAAGAGG
TTCGATCGACTGCCTGCTCGCGCTCGCTTTGCACGAGCGCGGCAACGCAG
ATCAGCTTGGCGGAGTTGCCTGCCTGAACAGTTCCCCGCTGGTCCCTGCT
TTCTTCGCGGGCTTGATCGCCCGCGCTGGTTATCTCGCTTTTCGAGCACC
GGGGTGGTTCTGATATCTACAAGGGGGGGGTAAGCTCCTCTGTTGGTGGA
CGGCGGTGGCTTCCACCAAGCATAGATAATGGGCAGGCTCGAAGATTACA
AGATGTTGGCGTGCATTGGCAGCGTCTAGGTGCGTAAAGGAGAGGCGACG
ATGCGGTTTTGTAGGCAAAGAGGTTGGCATGAGAAGTGCGTACGCTTGCA
TCGTACAGCAATCAACACTCAGTTCCGATCCCTTCACACTATCGCGTTTG
TTTTTGCGTCGGTGTTTTGTGTCGTGACTTCCCAGGGCCTGCGCAAGCTG
GACCCACCCGAGTGAAAAATATGGATGCACCATCACCCGCCCCGTCGGTC
CCAGGTAACGCCTTCCAAGGTTCTCGAAGGAATGCCGTGGTCATTCTTTC
CCCGTTGCCTTTCTTCCTGGCGCGACAACATTTCCCGCTCGACTCGTCGT
GCGATTGTGTGCTCCCGTTCGAGTCGTCGGCAGATGTTCAGCCCAGCCGC
CCGACCCGAGAAAGAAGCGAGAGTTGATGACGGAAAGGGACGCGGCCGCT
CCGGTTATGCCGCTGATCGAGGCCATAGCACTTACCGTCTGCCGCGATGT
GGCTCCTCCCGCTCACTTCTCAGGTCTAGCATCCTCGTCTTCGCCGACCG
CGGACGAGATTGCTCCCGAGGCAACGCCGGATCCGCAAGAAACCGTGCAA
CCCAGACCACCGCTGCGGTCGATGCCGCCGGGGGAGGCACCATCGGCGTC
ATCGCCAGAAAGCAGCGACGACTTCGGCGGCTTCGGCATCGCCGCGATCG
TGACCGCCTCTGTCGTCAGCGTGTTTTTGCTGGCCGCCCTCGTGCTGACG
TGCGTCTGGCTGAAGTCGCACTGCGCGGAGAAGGGCAAGAGCATTCGGCG
CTCGCTGGAGGAGTTGATCGGAAAGGGTTCCCTCTGGGGCGCCATCCTGG
TCGTTGTCGGGCTCATGGTTGCCCTCAACGCCTACACCGTCTCGATGCTG
TGGACCGTGGTGAGCGTGTTCGGGACCTTCGTTATGTGCTTCGGAATCGT
GGCGTGGTTCATCGCGTTCCAGACGGGGAGCCCTGCCGTGGTCTCGTTGG
AACTCCCGCGCAGGTCTGCCCCCACCTCCGTTCGCAGCGACAGCGGCGAA
AGGAGCGGTGGCGGCGGCGGCAGCGGCAGGAGCATCGCGAGCAACAGCAC
CTGTGAGACCCCGCGTGGCTGTTCCTTCGCGGCATCGCCGACTGTCACCG
ACCTACCTTCGTGGGGTAAAGGAGATAGCTTACGGCAGTCCCCCGCCGCT
GACGCCCCTGCCTCTCCCGCGAGGGGTGCTGCCGATTCTTTCTTCCCGGA
CACTTACGTCAGGGCCGTCTACATTCCAGCACATTCCGTGGACGGCCTCC
AACCTTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1191:49..5856-

>mRNA_H-canaliculatus_F_contig1191.1674.1 ID=mRNA_H-canaliculatus_F_contig1191.1674.1|Name=mRNA_H-canaliculatus_F_contig1191.1674.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1908bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1191:49..5856- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAATGGCGAAGCAGACGAAAGCGGGGTTTCGCTTCAACCCCTCCTTC
TTCGACGAGATTTTTGGTGGCTCCTGTGGAATTATTCCTGCTCTTGTCCG
ATGGAATGGCGAAGCAGACGAAAGCGGGGTTTCGCTTCAACCCCTCCTTC
TTCGACGAGATTTTTGGTGGCTCCTGTGGAATTATTCCTGCTCTTGTCCG
GGCCTGCGCAAGCTGGACCCACCCGAGTGAAAAATATGGATGCACCATCA
CCCGCCCCGTCGGTCCCAGGGCCTGCGCAAGCTGGACCCACCCGAGTGAA
AAATATGGATGCACCATCACCCGCCCCGTCGGTCCCAGGTCTAGCATCCT
CGTCTTCGCCGACCGCGGACGAGATTGCTCCCGAGGCAACGCCGGATCCG
CAAGAAACCGTGCAACCCAGACCACCGCTGCGGTCGATGCCGCCGGGGGA
GGCACCATCGGCGTCATCGCCAGAAAGCAGCGACGACTTCGGCGGCTTCG
GCATCGCCGCGATCGTGACCGCCTCTGTCGTCAGCGTGTTTTTGCTGGCC
GCCCTCGTGCTGACGTGCGTCTGGCTGAAGTCGCACTGCGCGGAGAAGGG
CAAGAGCATTCGGCGCTCGCTGGAGGAGTTGATCGGAAAGGGTTCCCTCT
GGGGCGCCATCCTGGTCGTTGTCGGGCTCATGGTTGCCCTCAACGCCTAC
ACCGTCTCGATGCTGTGGACCGTGGTGAGCGTGTTCGGGACCTTCGTTAT
GTGCTTCGGAATCGTGGCGTGGTTCATCGCGTTCCAGACGGGGAGCCCTG
CCGTGGTCTCGTTGGAACTCCCGCGCAGGTCTGCCCCCACCTCCGTTCGC
AGCGACAGCGGCGAAAGGAGCGGTGGCGGCGGCGGCAGCGGCAGGAGCAT
CGCGAGCAACAGCACCTGTGAGACCCCGCGTGGCTGTTCCTTCGCGGCAT
CGCCGACTGTCACCGACCTACCTTCGTGGGGTAAAGGAGATAGCTTACGG
CAGTCCCCCGCCGCTGACGCCCCTGCCTCTCCCGCGAGGGGTGCTGCCGA
TTCTTTCTTCCCGGACACTTACGTCAGGGCCGTCTACATTCCAGCACATT
CCGTGGACGGCCTCCAACCTTGAGTCTAGCATCCTCGTCTTCGCCGACCG
CGGACGAGATTGCTCCCGAGGCAACGCCGGATCCGCAAGAAACCGTGCAA
CCCAGACCACCGCTGCGGTCGATGCCGCCGGGGGAGGCACCATCGGCGTC
ATCGCCAGAAAGCAGCGACGACTTCGGCGGCTTCGGCATCGCCGCGATCG
TGACCGCCTCTGTCGTCAGCGTGTTTTTGCTGGCCGCCCTCGTGCTGACG
TGCGTCTGGCTGAAGTCGCACTGCGCGGAGAAGGGCAAGAGCATTCGGCG
CTCGCTGGAGGAGTTGATCGGAAAGGGTTCCCTCTGGGGCGCCATCCTGG
TCGTTGTCGGGCTCATGGTTGCCCTCAACGCCTACACCGTCTCGATGCTG
TGGACCGTGGTGAGCGTGTTCGGGACCTTCGTTATGTGCTTCGGAATCGT
GGCGTGGTTCATCGCGTTCCAGACGGGGAGCCCTGCCGTGGTCTCGTTGG
AACTCCCGCGCAGGTCTGCCCCCACCTCCGTTCGCAGCGACAGCGGCGAA
AGGAGCGGTGGCGGCGGCGGCAGCGGCAGGAGCATCGCGAGCAACAGCAC
CTGTGAGACCCCGCGTGGCTGTTCCTTCGCGGCATCGCCGACTGTCACCG
ACCTACCTTCGTGGGGTAAAGGAGATAGCTTACGGCAGTCCCCCGCCGCT
GACGCCCCTGCCTCTCCCGCGAGGGGTGCTGCCGATTCTTTCTTCCCGGA
CACTTACGTCAGGGCCGTCTACATTCCAGCACATTCCGTGGACGGCCTCC
AACCTTGA
back to top