mRNA_H-canaliculatus_F_contig10135.161.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: A0A6H5JW62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW62_9PHAE) HSP 1 Score: 504 bits (1297), Expect = 3.940e-160 Identity = 384/779 (49.29%), Postives = 451/779 (57.89%), Query Frame = 3 Query: 624 HSIVGLGHRW*PS--PPAPCPAGGTRAAADHRRWSCQVATKGPDGRKAGMCDLWTNLPSAQSTTDTTEAVTAGRLGVGSAPAIRPAATDENAASLGERGRGHGGGLKAARPRQSLSRLPVAVIKSMLQKNVRRGRAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCVVHETAACPVRESTASS----------------RHRRRCFGSTNGVGDSQGHSYRQQEIQPAAAVNFDSEEFSVPHPQSLLSFSTDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ANIRRALLMRVSYGGMAWDQALLKGVCLAWGERCGHLHFCCCCGTINPC----PAPSRSSADTPIASGGAGYDMLLSSSQKQRQPPEPPLYIPKAPQSPGTCTEAVGDRNQRAASSYTATHAGKAAGPARSESSHSNIIGADSTHLPPFGYAHESVLAALQGNGWTAFLAAAHSGTGMPRALRSELLAHVANGTAFGEARGTVAAGAGTEARGASDEEEKRRGAGEMKAGAGARAGAREGAVSTVARTASVPSRRIGPILREADAVLSGVDFHCSGVLDELLRSTAVAAKIGKALLRHRSEQRSGGNSIGSSXXXXXXXXXXXSGEIRRHEAEVISVRQAAKKAMWACSSGLNVRRLRIAF--RPDEEGG*DEKGSGNFCRCRRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGGSGGVCSSSCDDMDARVWAAMLPDVSVWARAFVRGRLARG 2885
H L W P+ P P PA A++ RW CQVATKGPDGRKAG CD+WTNL A+S TD AGR G + PA D+NA GLKAARP QSLSRLPVAV+KSMLQKN+RRGRA AAVRCALELALKSW+DAIRRVLVI VEDSLLHPAAPLLTWLMVATSKGYRPP RLLEAFLCVVHETAACPVR+ST SS HR F ++ Q +Q ++ FD++EF VPHP+SLL ++ G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ANIRRALLMRVSYGGMA+DQALLKGVCLAWGERCGH ++CCC G ++P A + ++A ++GG+ L +K E ++ A S T + V + Q + + A P ++ +N L PFGYAHESV +AL+GNGWTAFL AAH+GTGMP ALR+ LLAHV V G+G + +K R A ST S +GPI+READA+LSGVDFHCSGVLDELLRSTAVAA++GKA+ R + +G G+ E +++ VRQAAK+AMWACSSG+N RRLR+AF EEG E GN C C C G+ S MDARVWAAM DVS W FV+GRL+RG
Sbjct: 233 HQDGTLSWGWGPAGNPLPPIPAHFDTASS---RWRCQVATKGPDGRKAGTCDIWTNLAPAESVTDPVLPA-AGRGGDRVTRGVTPAGGDDNA------------GLKAARPAQSLSRLPVAVVKSMLQKNIRRGRAEAAVRCALELALKSWSDAIRRVLVITVEDSLLHPAAPLLTWLMVATSKGYRPPPRLLEAFLCVVHETAACPVRDSTDSSCRXXXXXXXXTCVSNGHHREAGFSISSAARTDQDPERQQLPVEKKC---FDADEFPVPHPKSLLVPASQGAHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIAVANIRRALLMRVSYGGMAFDQALLKGVCLAWGERCGHCYYCCCRGAVHPSFTLTVAAAATAASVDGSTGGSNPSCL--EGEKASTSGEGTIF---AKGSGSTDNKPVTPQRQPPSPPHVDHKTFSFARPRDQDAGKANREDLVDI-LQPFGYAHESVRSALEGNGWTAFLVAAHAGTGMPPALRTHLLAHV------------VGVGSGRAGERTGNMRQKSXXXXXXXXXXXXXXXXRLTAAST-----STHPICLGPIIREADAILSGVDFHCSGVLDELLRSTAVAARVGKAISESRGPRSNG------------------VGDAESSELDLVGVRQAAKQAMWACSSGINTRRLRVAFLWEAGEEGEETEVAEGN-CGC--CLSSPGYLEETEGIVGVGEDGVSLPV---------GIAGGSSSGMDARVWAAMSSDVSGWTTKFVQGRLSRG 939
BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: D7G4U0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U0_ECTSI) HSP 1 Score: 330 bits (846), Expect = 1.070e-99 Identity = 267/654 (40.83%), Postives = 309/654 (47.25%), Query Frame = 3 Query: 930 GLKAARPRQSLSRLPVAVIKSMLQKNVRRGRAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCVVHETAACPVRESTASSRHRRRCFGSTNGVGDSQGHSYRQQEIQPAAAVNFDSEEFSVPHPQSLLSFSTDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANIRRALLMRVSYGGMAWDQALLKGVCLAWGERCGHLHFCCCCGTINPCPAPSRSSADTPIASGGAGYDMLLSSSQKQRQPPEPPLYIPKAPQSPGTCTEAVGDRNQRAASSYTATHAGKAAGPARSESSHSNIIGADSTHLPPFGYAHESVLAALQGNGWTAFLAAAHSGTGMPRALRSELLAHVANGTAFGEARGTVAAGAGTEARGASDEEEKRRGAGEMKAGAGARAGAREGAVSTVARTASVPSRRIGPILREADAVLSGVDFHCSGVLDELLRSTAVAAKIGKALLRHRSEQRSGGNSIGSSXXXXXXXXXXXSGEIRRHEAEVISVRQAAKKAMWACSSGLNVRRLRIAFRPD--EEGG*DEKGSGNFCRCRRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGGSGGVCSSSCDDMDARVWAAMLPDVSVWARAFVRGRLARG 2885
GLKAARP QSLSRLPVAV+KSMLQKN+RRGRA AAVRCALELALKSW+DAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPP RLLEAFLCVVHETAACPV + SS + + E ST G +G LA G S S+ TP+ S QRQPP PP + K R+Q A G A E +++ L PFGYAHESVL+AL+GNGWTAFL AAH+GTGMP ALR+ +LAHV V G+G A D ++K + +ST A TA+ P+R +GPI+READA+LSGVDFHCSGVLDELLRSTAVAA++GKA+ R + N +G S E E++ VRQAAK+AMWACSSG+N RRLR+AF + EE E GN C G G S G+ DARVWAAM DVS W FVRGRL+RG
Sbjct: 32 GLKAARPAQSLSRLPVAVVKSMLQKNIRRGRAEAAVRCALELALKSWSDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPLRLLEAFLCVVHETAACPVTGGSNSS--------------------FLEGE-----------------------KASTSG------------------------------------------------------------EGTVLAKG---------------------SGSTDKTPVTS--------------QRQPPSPPRFDHKT-------FPLARPRDQDA-------------GYANRE----DLVDI----LQPFGYAHESVLSALEGNGWTAFLVAAHAGTGMPPALRTHVLAHV------------VGVGSGRAGERAGDMKQK---SXXXXXXXXXXXXXXXXXMSTAASTATPPNR-LGPIIREADAILSGVDFHCSGVLDELLRSTAVAARVGKAISESRGPRS---NDVGDSASS---------------ELELVGVRQAAKQAMWACSSGINTRRLRVAFLREAGEESEETEVAEGN----GGCCLSSPGYLEETERVVGVGEDGVSLPVGNGGGSSSGI--------DARVWAAMSSDVSGWTTKFVRGRLSRG 473
BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: A0A835ZBZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBZ5_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 1.290e-18 Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 3 Query: 1008 VRRGRAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCVVHETAAC 1235
+RRGR AVRCA ELA+KS+ D +RR+ +I +EDS+LHPA PLLTWLM A KGY PP + A L VVHE + C
Sbjct: 1 MRRGRGEGAVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMAAAGKGYIPPEPAVAACLAVVHEVSGC 76
BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: A0A7S1BMU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMU8_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.150e-15 Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 3 Query: 957 SLSRLPVAVIKSMLQKNVRRGRAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSK 1169
S SRL V V+KSMLQK VRR RA AVR A+ELA KSW D IRR+ VI+VEDS+LHP PL+ WLM+A SK
Sbjct: 30 SPSRLSVPVLKSMLQKCVRRRRALPAVRIAMELAQKSWRDFIRRLPVIMVEDSMLHPDLPLVVWLMMAESK 100
BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: A0A6U3V913_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3V913_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.200e-15 Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = 3 Query: 954 QSLSRLPVAVIKSMLQKNVRRGRAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCVVHETAACP 1238
Q SRL ++ +KS LQK++RR AVR A+ELA KSW D IRR+ +II+EDS LHP LL WLM+A SKGY P L+ L +V E A+CP
Sbjct: 269 QRHSRLSISHLKSCLQKSIRRRAPLPAVRVAMELADKSWTDLIRRLPIIILEDSTLHPDFSLLAWLMIADSKGYVPSKELIVRVLQIVFEMASCP 363
BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: A0A7S2V1T4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1T4_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 2.250e-15 Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = 3 Query: 1020 RAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCVVHETAACPVRESTASSRHRRRCFGSTNGVGDSQGHSYRQQEIQPAAAVNFD 1367
R +AVR ALEL KSW D IRR+++I++ED +LHPA PLL WL++A S+G+ P ++A L +VHE CP ++ R R G T+ SQ R++ +P +FD
Sbjct: 9 RGESAVRVALELMAKSWTDFIRRIVIIMIEDCMLHPATPLLVWLLLADSRGWIPTSAQVQACLKIVHELTLCPWKDQG----FRVRFDGGTS----SQSEGNREERHRPMKCADFD 116
BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: A0A7S0CK82_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CK82_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 3.140e-15 Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = 3 Query: 963 SRLPVAVIKSMLQKNVRRGRAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCVVHETAACP 1238
SRL + V+KS+LQK++RR R +VR A+EL KS+ D IRR+ +II+EDS+LHP P L W MV+ SKG+ P ++E L +V++ A+CP
Sbjct: 67 SRLSIPVLKSILQKSIRRRRPMPSVRIAMELIDKSYGDFIRRLPIIILEDSILHPQFPFLVWNMVSYSKGFVPAPNIVECILRIVYDVASCP 158
BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: A0A7R9U3T9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3T9_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 7.140e-15 Identity = 49/103 (47.57%), Postives = 68/103 (66.02%), Query Frame = 3 Query: 948 PRQSLSRLPVAVIKSMLQKNVRRGRAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCVVHETAACPVRESTA 1256
P+ + SR+P +V+KS LQK VRR ++ A+R A+ LA + +RR+ VI+ ED++LHPA PLL WLM+A SKGY P L A L +VHE A V ++ A
Sbjct: 154 PQAARSRVPASVLKSCLQKAVRRRKSVPALRLAMGLAFIDFEALVRRLCVIMAEDAVLHPALPLLVWLMMACSKGYVPVFADLYAILAIVHEVALTRVHDNIA 256
BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: B8C1K7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1K7_THAPS) HSP 1 Score: 90.1 bits (222), Expect = 7.430e-15 Identity = 72/224 (32.14%), Postives = 93/224 (41.52%), Query Frame = 3 Query: 963 SRLPVAVIKSMLQKNVRRGRAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCVVHETAACPVRESTASSRHRRRCFGSTNGVGDSQGHSYRQQEIQPAAAVNFDSEEFSVPHPQSLLSFSTDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANIRRALLMRVSYGGMAWDQALLKGVCLAWGER 1634
SRL VA +KS LQK++RR AVR ALEL KSW IRR+ +I +EDS LHP LL WLMVA SK Y PP L+ + +V E A+CP ++ S GD G + P++ + P L S S D + R +L+R YGGMA D +L W +R
Sbjct: 326 SRLSVAQLKSCLQKSIRRRAPLPAVRVALELVDKSWEALIRRLPIICLEDSFLHPDFALLVWLMVADSKNYAPPTSLIVRVMQIVFEMASCPRQDICIES------------YGDMSGMIWSFSMSTPSSQLL----------PSKLRSPSLDNA------------------------------------GTVIRTMLLRAQYGGMACDVQMLNSFAKTWLKR 491
BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: A0A448ZPZ8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPZ8_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 9.020e-14 Identity = 49/96 (51.04%), Postives = 66/96 (68.75%), Query Frame = 3 Query: 963 SRLPVAVIKSMLQKNVRRGRAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCVVHETAACPVRES 1250
SRL V V+KS+LQK++RR + +VR A ELA KS D +RR+ +II+EDS LHP+ P L WLM+A SK Y P LL+ L +V E A+C ++S
Sbjct: 101 SRLSVPVLKSILQKSIRRRKPLPSVRVASELADKSLGDLLRRLPIIILEDSTLHPSFPFLVWLMMADSKNYHLPLFLLKRVLGIVFEMASCRWQDS 196 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10135.161.1 >prot_H-canaliculatus_F_contig10135.161.1 ID=prot_H-canaliculatus_F_contig10135.161.1|Name=mRNA_H-canaliculatus_F_contig10135.161.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=622bp MCDLWTNLPSAQSTTDTTEAVTAGRLGVGSAPAIRPAATDENAASLGERGback to top mRNA from alignment at H-canaliculatus_F_contig10135:4..4856+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10135.161.1 ID=mRNA_H-canaliculatus_F_contig10135.161.1|Name=mRNA_H-canaliculatus_F_contig10135.161.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4853bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10135:4..4856+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10135:4..4856+ >mRNA_H-canaliculatus_F_contig10135.161.1 ID=mRNA_H-canaliculatus_F_contig10135.161.1|Name=mRNA_H-canaliculatus_F_contig10135.161.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3732bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10135:4..4856+ (Hapterophycus canaliculatus Oshoro5f female)back to top |