mRNA_H-canaliculatus_F_contig10135.161.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10135.161.1
Unique NamemRNA_H-canaliculatus_F_contig10135.161.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: A0A6H5JW62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW62_9PHAE)

HSP 1 Score: 504 bits (1297), Expect = 3.940e-160
Identity = 384/779 (49.29%), Postives = 451/779 (57.89%), Query Frame = 3 
Query:  624 HSIVGLGHRW*PS--PPAPCPAGGTRAAADHRRWSCQVATKGPDGRKAGMCDLWTNLPSAQSTTDTTEAVTAGRLGVGSAPAIRPAATDENAASLGERGRGHGGGLKAARPRQSLSRLPVAVIKSMLQKNVRRGRAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCVVHETAACPVRESTASS----------------RHRRRCFGSTNGVGDSQGHSYRQQEIQPAAAVNFDSEEFSVPHPQSLLSFSTDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ANIRRALLMRVSYGGMAWDQALLKGVCLAWGERCGHLHFCCCCGTINPC----PAPSRSSADTPIASGGAGYDMLLSSSQKQRQPPEPPLYIPKAPQSPGTCTEAVGDRNQRAASSYTATHAGKAAGPARSESSHSNIIGADSTHLPPFGYAHESVLAALQGNGWTAFLAAAHSGTGMPRALRSELLAHVANGTAFGEARGTVAAGAGTEARGASDEEEKRRGAGEMKAGAGARAGAREGAVSTVARTASVPSRRIGPILREADAVLSGVDFHCSGVLDELLRSTAVAAKIGKALLRHRSEQRSGGNSIGSSXXXXXXXXXXXSGEIRRHEAEVISVRQAAKKAMWACSSGLNVRRLRIAF--RPDEEGG*DEKGSGNFCRCRRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGGSGGVCSSSCDDMDARVWAAMLPDVSVWARAFVRGRLARG 2885
            H    L   W P+  P  P PA    A++   RW CQVATKGPDGRKAG CD+WTNL  A+S TD      AGR G      + PA  D+NA            GLKAARP QSLSRLPVAV+KSMLQKN+RRGRA AAVRCALELALKSW+DAIRRVLVI VEDSLLHPAAPLLTWLMVATSKGYRPP RLLEAFLCVVHETAACPVR+ST SS                 HR   F  ++     Q    +Q  ++      FD++EF VPHP+SLL  ++ G   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    ANIRRALLMRVSYGGMA+DQALLKGVCLAWGERCGH ++CCC G ++P      A + ++A    ++GG+    L    +K     E  ++   A  S  T  + V  + Q  +  +        A P   ++  +N        L PFGYAHESV +AL+GNGWTAFL AAH+GTGMP ALR+ LLAHV            V  G+G       +  +K                 R  A ST     S     +GPI+READA+LSGVDFHCSGVLDELLRSTAVAA++GKA+   R  + +G                   G+    E +++ VRQAAK+AMWACSSG+N RRLR+AF     EEG   E   GN C C  C                                  G+   S   MDARVWAAM  DVS W   FV+GRL+RG
Sbjct:  233 HQDGTLSWGWGPAGNPLPPIPAHFDTASS---RWRCQVATKGPDGRKAGTCDIWTNLAPAESVTDPVLPA-AGRGGDRVTRGVTPAGGDDNA------------GLKAARPAQSLSRLPVAVVKSMLQKNIRRGRAEAAVRCALELALKSWSDAIRRVLVITVEDSLLHPAAPLLTWLMVATSKGYRPPPRLLEAFLCVVHETAACPVRDSTDSSCRXXXXXXXXTCVSNGHHREAGFSISSAARTDQDPERQQLPVEKKC---FDADEFPVPHPKSLLVPASQGAHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIAVANIRRALLMRVSYGGMAFDQALLKGVCLAWGERCGHCYYCCCRGAVHPSFTLTVAAAATAASVDGSTGGSNPSCL--EGEKASTSGEGTIF---AKGSGSTDNKPVTPQRQPPSPPHVDHKTFSFARPRDQDAGKANREDLVDI-LQPFGYAHESVRSALEGNGWTAFLVAAHAGTGMPPALRTHLLAHV------------VGVGSGRAGERTGNMRQKSXXXXXXXXXXXXXXXXRLTAAST-----STHPICLGPIIREADAILSGVDFHCSGVLDELLRSTAVAARVGKAISESRGPRSNG------------------VGDAESSELDLVGVRQAAKQAMWACSSGINTRRLRVAFLWEAGEEGEETEVAEGN-CGC--CLSSPGYLEETEGIVGVGEDGVSLPV---------GIAGGSSSGMDARVWAAMSSDVSGWTTKFVQGRLSRG 939
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BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: D7G4U0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U0_ECTSI)

HSP 1 Score: 330 bits (846), Expect = 1.070e-99
Identity = 267/654 (40.83%), Postives = 309/654 (47.25%), Query Frame = 3 
Query:  930 GLKAARPRQSLSRLPVAVIKSMLQKNVRRGRAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCVVHETAACPVRESTASSRHRRRCFGSTNGVGDSQGHSYRQQEIQPAAAVNFDSEEFSVPHPQSLLSFSTDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANIRRALLMRVSYGGMAWDQALLKGVCLAWGERCGHLHFCCCCGTINPCPAPSRSSADTPIASGGAGYDMLLSSSQKQRQPPEPPLYIPKAPQSPGTCTEAVGDRNQRAASSYTATHAGKAAGPARSESSHSNIIGADSTHLPPFGYAHESVLAALQGNGWTAFLAAAHSGTGMPRALRSELLAHVANGTAFGEARGTVAAGAGTEARGASDEEEKRRGAGEMKAGAGARAGAREGAVSTVARTASVPSRRIGPILREADAVLSGVDFHCSGVLDELLRSTAVAAKIGKALLRHRSEQRSGGNSIGSSXXXXXXXXXXXSGEIRRHEAEVISVRQAAKKAMWACSSGLNVRRLRIAFRPD--EEGG*DEKGSGNFCRCRRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGGSGGVCSSSCDDMDARVWAAMLPDVSVWARAFVRGRLARG 2885
            GLKAARP QSLSRLPVAV+KSMLQKN+RRGRA AAVRCALELALKSW+DAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPP RLLEAFLCVVHETAACPV   + SS                    + + E                         ST G                                                            +G  LA G                     S S+  TP+ S              QRQPP PP +  K              R+Q A             G A  E    +++      L PFGYAHESVL+AL+GNGWTAFL AAH+GTGMP ALR+ +LAHV            V  G+G     A D ++K   +                 +ST A TA+ P+R +GPI+READA+LSGVDFHCSGVLDELLRSTAVAA++GKA+   R  +    N +G S                  E E++ VRQAAK+AMWACSSG+N RRLR+AF  +  EE    E   GN      C                            G G S G+        DARVWAAM  DVS W   FVRGRL+RG
Sbjct:   32 GLKAARPAQSLSRLPVAVVKSMLQKNIRRGRAEAAVRCALELALKSWSDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPLRLLEAFLCVVHETAACPVTGGSNSS--------------------FLEGE-----------------------KASTSG------------------------------------------------------------EGTVLAKG---------------------SGSTDKTPVTS--------------QRQPPSPPRFDHKT-------FPLARPRDQDA-------------GYANRE----DLVDI----LQPFGYAHESVLSALEGNGWTAFLVAAHAGTGMPPALRTHVLAHV------------VGVGSGRAGERAGDMKQK---SXXXXXXXXXXXXXXXXXMSTAASTATPPNR-LGPIIREADAILSGVDFHCSGVLDELLRSTAVAARVGKAISESRGPRS---NDVGDSASS---------------ELELVGVRQAAKQAMWACSSGINTRRLRVAFLREAGEESEETEVAEGN----GGCCLSSPGYLEETERVVGVGEDGVSLPVGNGGGSSSGI--------DARVWAAMSSDVSGWTTKFVRGRLSRG 473
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BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: A0A835ZBZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBZ5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.290e-18
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 3 
Query: 1008 VRRGRAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCVVHETAAC 1235
            +RRGR   AVRCA ELA+KS+ D +RR+ +I +EDS+LHPA PLLTWLM A  KGY PP   + A L VVHE + C
Sbjct:    1 MRRGRGEGAVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMAAAGKGYIPPEPAVAACLAVVHEVSGC 76
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BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: A0A7S1BMU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMU8_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.150e-15
Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 3 
Query:  957 SLSRLPVAVIKSMLQKNVRRGRAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSK 1169
            S SRL V V+KSMLQK VRR RA  AVR A+ELA KSW D IRR+ VI+VEDS+LHP  PL+ WLM+A SK
Sbjct:   30 SPSRLSVPVLKSMLQKCVRRRRALPAVRIAMELAQKSWRDFIRRLPVIMVEDSMLHPDLPLVVWLMMAESK 100
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: A0A6U3V913_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3V913_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.200e-15
Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = 3 
Query:  954 QSLSRLPVAVIKSMLQKNVRRGRAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCVVHETAACP 1238
            Q  SRL ++ +KS LQK++RR     AVR A+ELA KSW D IRR+ +II+EDS LHP   LL WLM+A SKGY P   L+   L +V E A+CP
Sbjct:  269 QRHSRLSISHLKSCLQKSIRRRAPLPAVRVAMELADKSWTDLIRRLPIIILEDSTLHPDFSLLAWLMIADSKGYVPSKELIVRVLQIVFEMASCP 363
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: A0A7S2V1T4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1T4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.250e-15
Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = 3 
Query: 1020 RAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCVVHETAACPVRESTASSRHRRRCFGSTNGVGDSQGHSYRQQEIQPAAAVNFD 1367
            R  +AVR ALEL  KSW D IRR+++I++ED +LHPA PLL WL++A S+G+ P    ++A L +VHE   CP ++       R R  G T+    SQ    R++  +P    +FD
Sbjct:    9 RGESAVRVALELMAKSWTDFIRRIVIIMIEDCMLHPATPLLVWLLLADSRGWIPTSAQVQACLKIVHELTLCPWKDQG----FRVRFDGGTS----SQSEGNREERHRPMKCADFD 116
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BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: A0A7S0CK82_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CK82_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.140e-15
Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = 3 
Query:  963 SRLPVAVIKSMLQKNVRRGRAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCVVHETAACP 1238
            SRL + V+KS+LQK++RR R   +VR A+EL  KS+ D IRR+ +II+EDS+LHP  P L W MV+ SKG+ P   ++E  L +V++ A+CP
Sbjct:   67 SRLSIPVLKSILQKSIRRRRPMPSVRIAMELIDKSYGDFIRRLPIIILEDSILHPQFPFLVWNMVSYSKGFVPAPNIVECILRIVYDVASCP 158
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: A0A7R9U3T9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3T9_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 7.140e-15
Identity = 49/103 (47.57%), Postives = 68/103 (66.02%), Query Frame = 3 
Query:  948 PRQSLSRLPVAVIKSMLQKNVRRGRAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCVVHETAACPVRESTA 1256
            P+ + SR+P +V+KS LQK VRR ++  A+R A+ LA   +   +RR+ VI+ ED++LHPA PLL WLM+A SKGY P    L A L +VHE A   V ++ A
Sbjct:  154 PQAARSRVPASVLKSCLQKAVRRRKSVPALRLAMGLAFIDFEALVRRLCVIMAEDAVLHPALPLLVWLMMACSKGYVPVFADLYAILAIVHEVALTRVHDNIA 256
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: B8C1K7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1K7_THAPS)

HSP 1 Score: 90.1 bits (222), Expect = 7.430e-15
Identity = 72/224 (32.14%), Postives = 93/224 (41.52%), Query Frame = 3 
Query:  963 SRLPVAVIKSMLQKNVRRGRAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCVVHETAACPVRESTASSRHRRRCFGSTNGVGDSQGHSYRQQEIQPAAAVNFDSEEFSVPHPQSLLSFSTDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANIRRALLMRVSYGGMAWDQALLKGVCLAWGER 1634
            SRL VA +KS LQK++RR     AVR ALEL  KSW   IRR+ +I +EDS LHP   LL WLMVA SK Y PP  L+   + +V E A+CP ++    S             GD  G  +      P++ +           P  L S S D                                        + R +L+R  YGGMA D  +L      W +R
Sbjct:  326 SRLSVAQLKSCLQKSIRRRAPLPAVRVALELVDKSWEALIRRLPIICLEDSFLHPDFALLVWLMVADSKNYAPPTSLIVRVMQIVFEMASCPRQDICIES------------YGDMSGMIWSFSMSTPSSQLL----------PSKLRSPSLDNA------------------------------------GTVIRTMLLRAQYGGMACDVQMLNSFAKTWLKR 491
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Match: A0A448ZPZ8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPZ8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 9.020e-14
Identity = 49/96 (51.04%), Postives = 66/96 (68.75%), Query Frame = 3 
Query:  963 SRLPVAVIKSMLQKNVRRGRAAAAVRCALELALKSWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCVVHETAACPVRES 1250
            SRL V V+KS+LQK++RR +   +VR A ELA KS  D +RR+ +II+EDS LHP+ P L WLM+A SK Y  P  LL+  L +V E A+C  ++S
Sbjct:  101 SRLSVPVLKSILQKSIRRRKPLPSVRVASELADKSLGDLLRRLPIIILEDSTLHPSFPFLVWLMMADSKNYHLPLFLLKRVLGIVFEMASCRWQDS 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10135.161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW62_9PHAE3.940e-16049.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4U0_ECTSI1.070e-9940.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZBZ5_9STRA1.290e-1859.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1BMU8_9STRA1.150e-1567.61Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A6U3V913_9STRA1.200e-1553.68Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2V1T4_9STRA2.250e-1541.38Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S0CK82_9STRA3.140e-1550.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7R9U3T9_9STRA7.140e-1547.57Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
B8C1K7_THAPS7.430e-1532.14Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A448ZPZ8_9STRA9.020e-1451.04Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10135contigH-canaliculatus_F_contig10135:4..4856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.0
Seed ortholog evalue6.3e-82
Seed eggNOG ortholog2880.D7G4U0
EggNOG OGs2DBB4@1,2S5HM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_000370.1
Exons6
Model size2885
Cds size1866
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10135.161.1prot_H-canaliculatus_F_contig10135.161.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10135 892..4601 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928642.8810875-UTR-H-canaliculatus_F_contig10135:3..3761622928642.8810875-UTR-H-canaliculatus_F_contig10135:3..376Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10135 4..376 +
1696845509.6145926-UTR-H-canaliculatus_F_contig10135:3..3761696845509.6145926-UTR-H-canaliculatus_F_contig10135:3..376Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10135 4..376 +
1622928642.8990855-UTR-H-canaliculatus_F_contig10135:430..7321622928642.8990855-UTR-H-canaliculatus_F_contig10135:430..732Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10135 431..732 +
1696845509.627033-UTR-H-canaliculatus_F_contig10135:430..7321696845509.627033-UTR-H-canaliculatus_F_contig10135:430..732Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10135 431..732 +
1622928642.9184525-UTR-H-canaliculatus_F_contig10135:802..8911622928642.9184525-UTR-H-canaliculatus_F_contig10135:802..891Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10135 803..891 +
1696845509.63935-UTR-H-canaliculatus_F_contig10135:802..8911696845509.63935-UTR-H-canaliculatus_F_contig10135:802..891Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10135 803..891 +
1622928643.0051732-UTR-H-canaliculatus_F_contig10135:4601..48561622928643.0051732-UTR-H-canaliculatus_F_contig10135:4601..4856Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10135 4602..4856 +
1696845509.699448-UTR-H-canaliculatus_F_contig10135:4601..48561696845509.699448-UTR-H-canaliculatus_F_contig10135:4601..4856Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10135 4602..4856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928642.9528258-CDS-H-canaliculatus_F_contig10135:891..10561622928642.9528258-CDS-H-canaliculatus_F_contig10135:891..1056Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10135 892..1056 +
1696845509.6526756-CDS-H-canaliculatus_F_contig10135:891..10561696845509.6526756-CDS-H-canaliculatus_F_contig10135:891..1056Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10135 892..1056 +
1622928642.9675665-CDS-H-canaliculatus_F_contig10135:1926..20841622928642.9675665-CDS-H-canaliculatus_F_contig10135:1926..2084Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10135 1927..2084 +
1696845509.6673636-CDS-H-canaliculatus_F_contig10135:1926..20841696845509.6673636-CDS-H-canaliculatus_F_contig10135:1926..2084Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10135 1927..2084 +
1622928642.9797118-CDS-H-canaliculatus_F_contig10135:2992..45341622928642.9797118-CDS-H-canaliculatus_F_contig10135:2992..4534Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10135 2993..4534 +
1696845509.679276-CDS-H-canaliculatus_F_contig10135:2992..45341696845509.679276-CDS-H-canaliculatus_F_contig10135:2992..4534Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10135 2993..4534 +
1622928642.991146-CDS-H-canaliculatus_F_contig10135:4600..46011622928642.991146-CDS-H-canaliculatus_F_contig10135:4600..4601Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10135 4601..4601 +
1696845509.6905715-CDS-H-canaliculatus_F_contig10135:4600..46011696845509.6905715-CDS-H-canaliculatus_F_contig10135:4600..4601Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10135 4601..4601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10135.161.1

>prot_H-canaliculatus_F_contig10135.161.1 ID=prot_H-canaliculatus_F_contig10135.161.1|Name=mRNA_H-canaliculatus_F_contig10135.161.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=622bp
MCDLWTNLPSAQSTTDTTEAVTAGRLGVGSAPAIRPAATDENAASLGERG
RGHGGGLKAARPRQSLSRLPVAVIKSMLQKNVRRGRAAAAVRCALELALK
SWNDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPHRLLEAFLCV
VHETAACPVRESTASSRHRRRCFGSTNGVGDSQGHSYRQQEIQPAAAVNF
DSEEFSVPHPQSLLSFSTDGGGVSAGGGSSSAVEEGEAGGAVEKAAAAAA
AAAAIAAANIRRALLMRVSYGGMAWDQALLKGVCLAWGERCGHLHFCCCC
GTINPCPAPSRSSADTPIASGGAGYDMLLSSSQKQRQPPEPPLYIPKAPQ
SPGTCTEAVGDRNQRAASSYTATHAGKAAGPARSESSHSNIIGADSTHLP
PFGYAHESVLAALQGNGWTAFLAAAHSGTGMPRALRSELLAHVANGTAFG
EARGTVAAGAGTEARGASDEEEKRRGAGEMKAGAGARAGAREGAVSTVAR
TASVPSRRIGPILREADAVLSGVDFHCSGVLDELLRSTAVAAKIGKALLR
HRSEQRSGGNSIGSSNSGNSNDDDDDSGEIRRHEAEVISVRQAAKKAMWA
CSSGLNVRRLRIAFRPDEEGG*
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mRNA from alignment at H-canaliculatus_F_contig10135:4..4856+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10135.161.1 ID=mRNA_H-canaliculatus_F_contig10135.161.1|Name=mRNA_H-canaliculatus_F_contig10135.161.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4853bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10135:4..4856+ (Hapterophycus canaliculatus Oshoro5f female)
TCAGCTCCACCACCGTCGTCCTCTTCAGGAGGGTCGAGCTTCGTAGAGTG
CCCCCTATGCGAAAAATCCGTGCACTCCTTGCTGGCGCAGTCGCACGTAG
AGCGATGCGGCGGCAGAGAGCAGGACAGCGCTCTTCAACCCACAGCGAGC
AGCGCGGGTCCTGCTTTCTCAACTGCAGCATCGCCGAATGTGGCGGCGGC
GACGGCGCGTGGCGGGCCTCTTGCGGCTGCTGCTTGTTGCGTCTCGTCGT
CACCACAAGCCGTGGGGGGTGAGATCGATGCTCGTGCCGTTATCAGTCCA
GGCTTAGCGGGGTCAGGTCCTCCGGCGGCCGAAGTCTCCTTATCTCAGCT
GATCGAGAAGGTAGCTGCTCCCCGTGCGGGCACGAGCGAGTCGGACGTGG
GGAGAACGCCGGCGGTTTCAGCAGCAGGAACAGCCGCCGTGCCAGCAACG
GCGGCGGTGTCTTCACCCTGCTCTTCTACTGCGAAGCCTCCATCGCCCTC
ACCAGCCGTCATCAGCGCTGGGATCGGCACTGCTGCCAGCAAAGGCCACA
GAGGAGGCGTTCGGAGGAGCGCGACGAACACAGGCACCACCGTGAACAAC
GCGTTCGCGACACTCATGGCGGCGTCCGCACTCTCCAACTTCCGGGAAGA
GATGTACCTGTGGGCTCACGAAGACGGCACTCTATCGTGGGGCTGGGGCA
CCGCTGGTAACCCTCTCCCCCCGCCCCCTGTCGCCCCCCCTGCGATGAAC
GGCGGCGGCGAAGGGACTGGCAACAGGAGCAGCAGCAGCAGCAGCAGCAG
CCCGGCCGGCGGAACTAGGGCCGCCGCAGACCACCGCCGGTGGTCTTGTC
AAGTGGCTACAAAGGGTCCGGACGGACGCAAGGCGGGGATGTGCGACCTG
TGGACCAACCTCCCGTCCGCTCAATCTACGACGGATACTACGGAGGCGGT
GACGGCGGGGAGACTGGGGGTCGGCTCAGCGCCGGCGATTCGCCCGGCAG
CCACCGATGAAAATGCGGCAAGTCTGGGAGAGAGAGGGCGGGGGCACGGG
GGTGTTTTAACGGACGGTGGGCAAAGGGGCAAGGGTTGTGAAGGTTATGC
GTGTGGCAGCTCCGATGCCAATGACTGAGAGTGGAAGCTTCATGTGGAGG
TAGTTTATTGCTAACCACGCCGCCTCCCTTGCGTCGTGCCCCATACGTAC
GTTTGCTTCGCCCGAATCTCGGTACACGGAACGATTTGCGGTACCACCAC
GCTGTCCTTTGTGCTGTTCTGCACTCTGCACCGTGGAGAATGGTTCGTTC
TCCCACCACCCCTTGCTCAAGATTGTTTCTCAGGCCCTTTCTATGTCGGT
AGATACTCGTCTCCTGACATCGCCGGGTCTCACTTTCGCAGCAACGAGAA
GCGTATCGATCTCTCCTTGCCCCGTTTACGCGAGACAGACACACAGACGG
ATTTCGTTTGTCGTACTCTCTACTCGGATAAGGCTGACGACATCTCAGGC
ATATTTTGCCATCCTGTTGCCTTCTTATCAATGTGTTTTGGCGGCCTTTT
TTCGCCTGGTTGTCCGTCCCTTTACCATGAACAGAAAGCGCTTTAAACCA
TACACAATGAAACCTCCTTGTTTGGGACTCAAGAACCTCAGGTGCGTCTC
ACACGACGTAGCTCAGGAGGTGTTCCTACGGTATTGTTGTGTCTTCCTAT
TAAAAACGCTTGTGATCCTACCAGCGCAGACACAGCTCCTCCCGCACGCT
CTCCTCGCGTTGTCTGGCGAGTCTCGTATCTAGGATCTCGAGTTTGTGAA
CGCTCGTGATTCATACGCTACACTCATGGAGCTGATTTCTGAACAAACAA
CGGAATTCCGCCCCATCATAAATTTACCCCGCGATTCATCGCTGCTGTTG
GTGTGCGCCGTCCGGAATCGCAGGGCTTGAAGGCTGCACGGCCGCGACAA
AGCTTGTCCCGTCTTCCGGTAGCGGTCATCAAGTCTATGCTGCAGAAGAA
TGTCAGGCGAGGGAGAGCGGCGGCGGCGGTGCGGTGCGCGCTAGAGCTGG
CGCTCAAGAGCTGGAACGATGCGATACGCCGGTAATTTTCGTTGTCGATG
TATTGCGTCCTGCTGTTTTTTATTTCACGCCGCCAAATCAACACGTGACA
GCATCTATTTTTTAGGACTGTGGCCTCTTGTGGTTGCTCTTTCACGCAAA
AACGGTGTGTTCGTTCGAAGCGATGCTTGGTATAGCCGCCAGTCAAAGCG
TTCGCTGAGACACCAAAGCAGCACGTTTATCCCTGTGCACCCTGTCGCTA
AGTTACTGCTTTCGTTGTGTTCCTCTGGAGTCGACGCATTTTTCTCAAGT
GTCGTTTGCATGATACTCAAGAGGGCTCGCCAGTACATCGGACGTTACGT
GCGGGTCTCGCGAGACATCGGTGGCGCGGGTGCTGGCCGCCGAAGGTCGC
TGGGACTGGCTCTATTTTCAGGGGGCACCGATCCGAACTGAAAAGGCCTG
TGTGACTTGAAAACCAAACAGAGGATGAACTTCGAATTTTTGGCGGAATG
TGCTTTCGTTTTTAAAACACGTTCACACGTCCGAACGGCTGCTGCCGTGT
GGCTTTAGACGCAAACATCAACAGCAAATACGCTGCGAACACAATGACTA
TTGCATTGGCTACAGCAGAGGCCAGTCATAACGCTGTGACAGCACGGGGT
CGTCTGTACAGAACAGACACAGAAAACACAACCGTTCTCCACGGCGGGGT
ATTTTTTTGTTCATCGCCCTCTACCCACCTACCTGGCACCAGGTATGTAT
CATGTACGGCAGTCACATCAAAATGACTTCCTGCTGACCGTGGCGTTTCT
TCATATTTTCCCCTTGCGGCACCCCCGGGAGTGTACGTGTCTCGGGGAAC
CTTACATCATACCGTCTACCATCTCGTACCTCACCATACCTTGTGGATGC
TACCCGCCCCTCTTCCTTTCGTTCTTTGGCCTTGCGCAGCGTGCTGGTGA
TTATCGTGGAGGACTCTCTCCTGCACCCCGCCGCGCCGCTCCTGACCTGG
CTCATGGTCGCCACCTCCAAAGGCTACCGCCCGCCGCATCGCCTGCTCGA
GGCTTTCCTTTGCGTGGTCCACGAGACGGCGGCTTGTCCCGTGCGGGAGT
CGACTGCTTCCTCCCGCCACCGCCGCCGGTGCTTCGGCAGCACCAACGGC
GTGGGGGACAGCCAGGGCCACTCCTACCGGCAGCAAGAGATACAACCGGC
GGCAGCTGTGAATTTCGACTCGGAAGAGTTTTCGGTTCCGCACCCCCAAA
GCTTGCTGAGTTTCTCTACCGATGGTGGTGGGGTCTCCGCCGGTGGTGGG
AGCAGCAGCGCCGTGGAGGAAGGAGAAGCAGGAGGTGCGGTAGAGAAAGC
GGCGGCGGCGGCGGCGGCGGCAGCTGCAATTGCAGCGGCGAACATCCGGC
GTGCACTGCTGATGCGCGTATCCTACGGGGGCATGGCATGGGATCAGGCC
CTGCTAAAGGGTGTTTGCCTGGCGTGGGGGGAGCGCTGTGGGCACTTACA
CTTCTGCTGCTGCTGCGGGACAATTAACCCGTGCCCTGCTCCTTCTCGTT
CTTCCGCTGATACTCCTATTGCAAGCGGCGGTGCAGGCTATGACATGCTT
TTGTCATCCTCACAGAAGCAAAGACAACCACCAGAGCCGCCTCTTTATAT
CCCCAAGGCTCCTCAATCTCCAGGAACATGCACCGAAGCCGTCGGCGACC
GCAACCAGCGCGCAGCCAGTAGTTACACGGCTACACATGCCGGAAAGGCC
GCCGGTCCTGCACGCAGCGAAAGCAGCCACAGCAACATCATAGGCGCCGA
CAGTACGCACTTGCCGCCGTTCGGATACGCGCACGAGAGCGTGCTTGCTG
CCCTGCAGGGAAACGGCTGGACCGCTTTCTTAGCGGCAGCGCACAGCGGG
ACGGGAATGCCGAGGGCGCTGCGGTCGGAGCTTCTGGCGCACGTCGCGAA
CGGCACCGCTTTCGGGGAAGCACGGGGTACGGTGGCGGCGGGGGCGGGGA
CGGAAGCACGGGGTGCGAGTGATGAAGAAGAGAAACGGCGTGGAGCAGGA
GAGATGAAAGCAGGAGCAGGAGCACGAGCAGGAGCACGAGAAGGGGCCGT
GTCCACGGTAGCGAGGACGGCCAGTGTTCCGAGCCGTCGCATCGGTCCCA
TCCTTCGAGAGGCTGACGCTGTCCTGAGCGGCGTGGATTTCCACTGCAGC
GGCGTTCTCGACGAGCTTCTGCGATCGACCGCAGTTGCCGCGAAGATAGG
CAAGGCGCTGCTCCGCCACCGCTCGGAGCAGAGAAGCGGTGGCAACAGCA
TCGGCAGCAGCAACAGCGGCAACAGCAACGACGACGACGACGATAGTGGC
GAAATCAGACGCCACGAAGCCGAGGTGATCAGCGTGAGGCAAGCCGCCAA
AAAGGCTATGTGGGCCTGCTCTAGCGGGTTAAATGTCCGGAGACTGCGGA
TTGCGTTTCGCCCCGACGAGGAAGGAGGGTGGTCGCAGGAGGAGGGGGTC
TGCGAAGAGAGCAAGAAAGGGGACATGGAGCAAGAGGGGGCCCGCAGAGA
TGAAAAAGGGTCAGGCAACTTCTGCCGCTGCCGCCGCTGTTGCTGCTCGT
CAAGTCCTGGGCTCCTTGAAGAAATAGGGAGGGCGGGGGGCGCGGGTGAG
GACGATGCTTTGTTGCTTACGCCAGGGGACGGCGGGAGCGGGGGCGTTTG
TTCTTCCTCTTGTGACGACATGGACGCCAGGGTTTGGGCTGCAATGTTGC
CAGATGTGTCCGTCTGGGCCAGAGCATTCGTGAGAGGAAGGTTGGCTAGG
GGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10135:4..4856+

>mRNA_H-canaliculatus_F_contig10135.161.1 ID=mRNA_H-canaliculatus_F_contig10135.161.1|Name=mRNA_H-canaliculatus_F_contig10135.161.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3732bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10135:4..4856+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGCGACCTGTGGACCAACCTCCCGTCCGCTCAATCTACGACGGATAC
TACGGAGGCGGTGACGGCGGGGAGACTGGGGGTCGGCTCAGCGCCGGCGA
TTCGCCCGGCAGCCACCGATGAAAATGCGGCAAGTCTGGGAGAGAGAGGG
CGGGGGCACGGGGGTATGTGCGACCTGTGGACCAACCTCCCGTCCGCTCA
ATCTACGACGGATACTACGGAGGCGGTGACGGCGGGGAGACTGGGGGTCG
GCTCAGCGCCGGCGATTCGCCCGGCAGCCACCGATGAAAATGCGGCAAGT
CTGGGAGAGAGAGGGCGGGGGCACGGGGGTGGCTTGAAGGCTGCACGGCC
GCGACAAAGCTTGTCCCGTCTTCCGGTAGCGGTCATCAAGTCTATGCTGC
AGAAGAATGTCAGGCGAGGGAGAGCGGCGGCGGCGGTGCGGTGCGCGCTA
GAGCTGGCGCTCAAGAGCTGGAACGATGCGATACGCCGGGCTTGAAGGCT
GCACGGCCGCGACAAAGCTTGTCCCGTCTTCCGGTAGCGGTCATCAAGTC
TATGCTGCAGAAGAATGTCAGGCGAGGGAGAGCGGCGGCGGCGGTGCGGT
GCGCGCTAGAGCTGGCGCTCAAGAGCTGGAACGATGCGATACGCCGCGTG
CTGGTGATTATCGTGGAGGACTCTCTCCTGCACCCCGCCGCGCCGCTCCT
GACCTGGCTCATGGTCGCCACCTCCAAAGGCTACCGCCCGCCGCATCGCC
TGCTCGAGGCTTTCCTTTGCGTGGTCCACGAGACGGCGGCTTGTCCCGTG
CGGGAGTCGACTGCTTCCTCCCGCCACCGCCGCCGGTGCTTCGGCAGCAC
CAACGGCGTGGGGGACAGCCAGGGCCACTCCTACCGGCAGCAAGAGATAC
AACCGGCGGCAGCTGTGAATTTCGACTCGGAAGAGTTTTCGGTTCCGCAC
CCCCAAAGCTTGCTGAGTTTCTCTACCGATGGTGGTGGGGTCTCCGCCGG
TGGTGGGAGCAGCAGCGCCGTGGAGGAAGGAGAAGCAGGAGGTGCGGTAG
AGAAAGCGGCGGCGGCGGCGGCGGCGGCAGCTGCAATTGCAGCGGCGAAC
ATCCGGCGTGCACTGCTGATGCGCGTATCCTACGGGGGCATGGCATGGGA
TCAGGCCCTGCTAAAGGGTGTTTGCCTGGCGTGGGGGGAGCGCTGTGGGC
ACTTACACTTCTGCTGCTGCTGCGGGACAATTAACCCGTGCCCTGCTCCT
TCTCGTTCTTCCGCTGATACTCCTATTGCAAGCGGCGGTGCAGGCTATGA
CATGCTTTTGTCATCCTCACAGAAGCAAAGACAACCACCAGAGCCGCCTC
TTTATATCCCCAAGGCTCCTCAATCTCCAGGAACATGCACCGAAGCCGTC
GGCGACCGCAACCAGCGCGCAGCCAGTAGTTACACGGCTACACATGCCGG
AAAGGCCGCCGGTCCTGCACGCAGCGAAAGCAGCCACAGCAACATCATAG
GCGCCGACAGTACGCACTTGCCGCCGTTCGGATACGCGCACGAGAGCGTG
CTTGCTGCCCTGCAGGGAAACGGCTGGACCGCTTTCTTAGCGGCAGCGCA
CAGCGGGACGGGAATGCCGAGGGCGCTGCGGTCGGAGCTTCTGGCGCACG
TCGCGAACGGCACCGCTTTCGGGGAAGCACGGGGTACGGTGGCGGCGGGG
GCGGGGACGGAAGCACGGGGTGCGAGTGATGAAGAAGAGAAACGGCGTGG
AGCAGGAGAGATGAAAGCAGGAGCAGGAGCACGAGCAGGAGCACGAGAAG
GGGCCGTGTCCACGGTAGCGAGGACGGCCAGTGTTCCGAGCCGTCGCATC
GGTCCCATCCTTCGAGAGGCTGACGCTGTCCTGAGCGGCGTGGATTTCCA
CTGCAGCGGCGTTCTCGACGAGCTTCTGCGATCGACCGCAGTTGCCGCGA
AGATAGGCAAGGCGCTGCTCCGCCACCGCTCGGAGCAGAGAAGCGGTGGC
AACAGCATCGGCAGCAGCAACAGCGGCAACAGCAACGACGACGACGACGA
TAGTGGCGAAATCAGACGCCACGAAGCCGAGGTGATCAGCGTGAGGCAAG
CCGCCAAAAAGGCTATGTGGGCCTGCTCTAGCGGGTTAAATGTCCGGAGA
CTGCGGATTGCGTTTCGCCCCGACGAGGAAGGAGGGTGCGTGCTGGTGAT
TATCGTGGAGGACTCTCTCCTGCACCCCGCCGCGCCGCTCCTGACCTGGC
TCATGGTCGCCACCTCCAAAGGCTACCGCCCGCCGCATCGCCTGCTCGAG
GCTTTCCTTTGCGTGGTCCACGAGACGGCGGCTTGTCCCGTGCGGGAGTC
GACTGCTTCCTCCCGCCACCGCCGCCGGTGCTTCGGCAGCACCAACGGCG
TGGGGGACAGCCAGGGCCACTCCTACCGGCAGCAAGAGATACAACCGGCG
GCAGCTGTGAATTTCGACTCGGAAGAGTTTTCGGTTCCGCACCCCCAAAG
CTTGCTGAGTTTCTCTACCGATGGTGGTGGGGTCTCCGCCGGTGGTGGGA
GCAGCAGCGCCGTGGAGGAAGGAGAAGCAGGAGGTGCGGTAGAGAAAGCG
GCGGCGGCGGCGGCGGCGGCAGCTGCAATTGCAGCGGCGAACATCCGGCG
TGCACTGCTGATGCGCGTATCCTACGGGGGCATGGCATGGGATCAGGCCC
TGCTAAAGGGTGTTTGCCTGGCGTGGGGGGAGCGCTGTGGGCACTTACAC
TTCTGCTGCTGCTGCGGGACAATTAACCCGTGCCCTGCTCCTTCTCGTTC
TTCCGCTGATACTCCTATTGCAAGCGGCGGTGCAGGCTATGACATGCTTT
TGTCATCCTCACAGAAGCAAAGACAACCACCAGAGCCGCCTCTTTATATC
CCCAAGGCTCCTCAATCTCCAGGAACATGCACCGAAGCCGTCGGCGACCG
CAACCAGCGCGCAGCCAGTAGTTACACGGCTACACATGCCGGAAAGGCCG
CCGGTCCTGCACGCAGCGAAAGCAGCCACAGCAACATCATAGGCGCCGAC
AGTACGCACTTGCCGCCGTTCGGATACGCGCACGAGAGCGTGCTTGCTGC
CCTGCAGGGAAACGGCTGGACCGCTTTCTTAGCGGCAGCGCACAGCGGGA
CGGGAATGCCGAGGGCGCTGCGGTCGGAGCTTCTGGCGCACGTCGCGAAC
GGCACCGCTTTCGGGGAAGCACGGGGTACGGTGGCGGCGGGGGCGGGGAC
GGAAGCACGGGGTGCGAGTGATGAAGAAGAGAAACGGCGTGGAGCAGGAG
AGATGAAAGCAGGAGCAGGAGCACGAGCAGGAGCACGAGAAGGGGCCGTG
TCCACGGTAGCGAGGACGGCCAGTGTTCCGAGCCGTCGCATCGGTCCCAT
CCTTCGAGAGGCTGACGCTGTCCTGAGCGGCGTGGATTTCCACTGCAGCG
GCGTTCTCGACGAGCTTCTGCGATCGACCGCAGTTGCCGCGAAGATAGGC
AAGGCGCTGCTCCGCCACCGCTCGGAGCAGAGAAGCGGTGGCAACAGCAT
CGGCAGCAGCAACAGCGGCAACAGCAACGACGACGACGACGATAGTGGCG
AAATCAGACGCCACGAAGCCGAGGTGATCAGCGTGAGGCAAGCCGCCAAA
AAGGCTATGTGGGCCTGCTCTAGCGGGTTAAATGTCCGGAGACTGCGGAT
TGCGTTTCGCCCCGACGAGGAAGGAGGGTGAA
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