mRNA_H-canaliculatus_F_contig10133.158.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10133.158.1
Unique NamemRNA_H-canaliculatus_F_contig10133.158.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI)

HSP 1 Score: 426 bits (1094), Expect = 1.000e-138
Identity = 220/261 (84.29%), Postives = 232/261 (88.89%), Query Frame = 1
Query:    1 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALTGG--------KSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQKHRLGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLLAKMEYRENVAETRAA 759
            GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYN++ ERHLR SAL TLTRPSVLITDAHNALTGG          RK RE  LISTVMDTVRGGGNVLLPTDTAGRVLELLVLL+D+WQKHRLG+YKLVLLHNTAFNT EFAKSQ       LEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELG+DPKVV+ATDMSLD+GFSKALLLRWASGGANTILLTGRGHG+TTAR L+AK EYR++ A  RAA
Sbjct:  265 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNNDHERHLRASALGTLTRPSVLITDAHNALTGGGMIRKDPSSKRKLREVELISTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDYWQKHRLGSYKLVLLHNTAFNTCEFAKSQ-------LEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGRGHGNTTARTLIAKSEYRKSEAGRRAA 518          
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA)

HSP 1 Score: 298 bits (763), Expect = 3.560e-91
Identity = 152/239 (63.60%), Postives = 181/239 (75.73%), Query Frame = 1
Query:    1 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALT-GGKSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQKHRLGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLL 714
            GRGAGVTITPYAAG +IG ++WR+ WQT+DNDIVYA +YNH RE HL   A+ TL+RPS++ITDAH  LT   K  + R + L   V  TVR GGNVLLP DTAGRVLELL+LLD HW +++LG+Y LVLLH+ AFNT EFAKSQ       LEWMS+ I + FDLQRSNPFE+R+V + HSLEEL  LG  P VVLATD+SLD+GF+KALLL WA+   N +LLT RGHG + AR LL
Sbjct:  191 GRGAGVTITPYAAGHIIGGSLWRICWQTDDNDIVYAVSYNHRREEHLNGGAVETLSRPSIMITDAHQVLTMQPKPPRKRASDLTEMVTATVRKGGNVLLPCDTAGRVLELLLLLDHHWTRNKLGSYPLVLLHSMAFNTGEFAKSQ-------LEWMSDAISKQFDLQRSNPFEMRHVAMAHSLEELQALGTGPMVVLATDLSLDFGFAKALLLAWAADPLNLVLLTQRGHGDSVARELL 422          
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: A0A6U9RRA8_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9RRA8_9CHLO)

HSP 1 Score: 232 bits (591), Expect = 4.710e-67
Identity = 120/242 (49.59%), Postives = 161/242 (66.53%), Query Frame = 1
Query:    1 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALTGGKSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQKHRLGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLLAKME 726
            G+G G+TITP+ AG  +G   WR++ + ED  I+YA  YNH +ERHL  +AL T  RP+VLITDA+N LT   SRK R+  L++ VM T+R GGNVL+P DTA RVLELL++LD HW+  ++G Y LVLL+N A+N  EFAKS        LE+M+ DI ++F+  R N F+ +NVH+ HSLEEL+EL + PKVVLA+  SL+ G  + LL+ WAS   N IL   R    T +  +   M+
Sbjct:  150 GKGEGITITPFPAGHSVGGTTWRITKEAED--ILYAVDYNHRKERHLNGAALHTFNRPAVLITDAYNGLTEQTSRKLRDRTLVAGVMQTLRSGGNVLIPVDTATRVLELLLVLDSHWEHQKIGLYSLVLLNNVAYNVVEFAKSM-------LEFMNSDISKSFEHTRDNVFDCKNVHLCHSLEELEELPDQPKVVLASMASLEAGLGRNLLVDWASDPDNLILFVERAQAGTLSSFIQTYMD 382          
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: L8GYA6_ACACA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYA6_ACACA)

HSP 1 Score: 231 bits (590), Expect = 1.760e-66
Identity = 120/240 (50.00%), Postives = 159/240 (66.25%), Query Frame = 1
Query:    1 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALTGGKSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQKHRLGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLLAK 720
            GRGAG+ +TPY  G MIG  VW+++ +TE+  I+YA  YNH +ERHL P+ L TL RP++LITDA N L+   SR+ R+  L+ T M T++G GNVLLPTDTAGRVLELL+  D HW  +RL  Y LVLL   A+NT EFAKSQ       LEWMS  + ++FDL R NPFE + V + HS+EEL+ L   P VVLAT  SL++GF++ L + W+S   + ++ T R    T    +L +
Sbjct:  103 GRGAGIELTPYVGGHMIGGTVWKITKETEE--ILYAVDYNHKKERHLNPTVLETLNRPTLLITDAFNGLSTQSSRRSRDMDLLDTTMKTLKGDGNVLLPTDTAGRVLELLLTFDQHWAYYRLSQYGLVLLEKQAYNTIEFAKSQ-------LEWMSTAVQKSFDLDRVNPFEFKFVRLCHSVEELEALPK-PLVVLATTASLEWGFARDLFVEWSSNPRHAVIFTDRPQPGTLGHLVLTQ 332          
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: A0A7S0N1Z8_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1Z8_9CHLO)

HSP 1 Score: 209 bits (532), Expect = 5.920e-61
Identity = 107/235 (45.53%), Postives = 153/235 (65.11%), Query Frame = 1
Query:   10 AGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALTGGKSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQKHRLGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLL 714
            A VT+TPY AG ++G  +W++S +TED  +VYA  +NH +ERHL  + L +  RPS+LITDA NA     +R  R+  L  TV   +RGGG+VL+P DTAGRVLEL++ L+ +W   +L +YKLVLL N A+NT EFAKS        +EWM++ I   FD  R+N F+ R++H+ HS+EEL  LG  PK+V+A+  SL+ G ++ L + WA+   N +L    G  +T AR ++
Sbjct:  149 AAVTVTPYNAGHLLGGTLWKISKETED--VVYAVDFNHKKERHLNGTVLESFNRPSLLITDAFNAANRPPARAARDKELTDTVAKVLRGGGSVLIPIDTAGRVLELVLHLEQYWTVAKLASYKLVLLTNVAYNTMEFAKSH-------IEWMNDAISTTFDQTRTNAFKTRHLHLCHSVEELAGLGPGPKLVMASMQSLEVGPARELFVTWATNPRNLLLFPDMGQPNTLAREVM 374          
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: A0A6B2KYM6_9EUKA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KYM6_9EUKA)

HSP 1 Score: 211 bits (536), Expect = 4.940e-59
Identity = 115/238 (48.32%), Postives = 153/238 (64.29%), Query Frame = 1
Query:    1 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALTGGKSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQKHRLGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLL 714
            G+G  + ITPYAAG +IG  +W++  +T++  I+YA  YNH +ERHL P+ L TLT+P++LITDA NAL    SR  R++ LI ++  T+R GGNVLLP DTAGRVLELLV+LD HW  H   +Y L+ L+N A+NT EFAKSQ       LEWMSE I   F   R N F+  NV + H   E++E  + PKVVLA+  SL+ GF++ + + W S   N I+ T      T AR L+
Sbjct:  139 GKGIKLEITPYAAGHLIGGTIWKIKRETDE--IIYAVDYNHKKERHLSPTILETLTQPTLLITDALNALNSQDSRGNRDSLLIESITSTLRAGGNVLLPVDTAGRVLELLVILDQHWS-HFHYSYPLLFLNNVAYNTIEFAKSQ-------LEWMSEAIMNKFISHRENCFQFSNVKLCHKTSEVNEFPS-PKVVLASMSSLNSGFAQDIFVEWCSDAKNRIIFTDTSRPGTIARRLM 365          
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: A7RPX1_NEMVE (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RPX1_NEMVE)

HSP 1 Score: 210 bits (535), Expect = 5.800e-59
Identity = 113/253 (44.66%), Postives = 161/253 (63.64%), Query Frame = 1
Query:    1 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALTGGKSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQK--HRLGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLLAKMEYRENVAETR 753
            G+G G+TITPYAAG MIG  +W++    E+ DI+YA  YNH +ERHL  + L TL+RPS+LITD+ NAL     R+ R+ +L+  ++ T+R  GNV++  DTAGRVLEL  LLD  W+     L  Y L +L+N ++N  EFAKSQ       +EWMS+ I +AF++ R+NP++ R  H+ HSL +L  +  +PKVVLA+ M L  GFS+ L + WA    NT++ T R    T AR L+  +E ++   E +
Sbjct:  139 GKGHGITITPYAAGHMIGGTMWKIVKDGEE-DIIYAVDYNHKKERHLNGAVLETLSRPSLLITDSFNALNIQTRRRERDTQLMGEILKTMRRHGNVMIAIDTAGRVLELSQLLDQLWRNLDSGLSAYSLAMLNNVSYNVIEFAKSQ-------VEWMSDKIMKAFEIGRNNPYQFRYCHLCHSLADLARVP-EPKVVLASMMDLTAGFSRDLFVEWADNPKNTVIFTARSSPGTLARTLIDNLELKQVELEVK 382          
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: A0A2R6XNT6_MARPO (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XNT6_MARPO)

HSP 1 Score: 210 bits (535), Expect = 6.430e-59
Identity = 110/240 (45.83%), Postives = 157/240 (65.42%), Query Frame = 1
Query:    1 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALTGGKSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQKHRLGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLLAK 720
            G+G G+TITPYAAGR++G  VW+++  TED  I+YA  +NH +ERHL  + L +  RP+VLITD++NAL     +K R+A  +  VM  +R GGNVLLP +TAGRVLEL++ LD  W   +L NY + LL N +++T EFAKS        LEWMS+ I ++F+  R N F L+ + + H+ ++LD+L   PKVV A+  SL+ GF++ L + WA+   N +L T RG   T +R L A+
Sbjct:  156 GKGEGITITPYAAGRLLGGTVWKITVDTED--IIYAVDFNHRKERHLNGTVLQSFVRPAVLITDSYNALNNQPLQKQRDAEFLDVVMKALRAGGNVLLPVETAGRVLELVLYLDKCWAGDKL-NYPMALLTNVSYSTLEFAKSL-------LEWMSDAIAKSFEHTRDNSFVLKYLKLCHTRKDLDDLPAGPKVVFASMASLEAGFARELFVEWATDPNNLVLFTERGQVGTLSRKLQAE 385          
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: A0A388KIQ1_CHABU (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388KIQ1_CHABU)

HSP 1 Score: 207 bits (528), Expect = 4.340e-58
Identity = 110/241 (45.64%), Postives = 155/241 (64.32%), Query Frame = 1
Query:    1 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALTGGKSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQKHRLGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDE-LGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLLAK 720
            G+G G+TIT YAAG ++G  VW+++  TED  I+YA  Y+H +ERHL  + L T  RP+VLITDA+NAL+    +K R+   I ++M T+RG G+VL+P +TAGRVLEL++ L+ HW   RL  Y LV L + +++T + AKS        LEWMS+ I + FD  R N FE++ +++ HS EE D  L   P+VVLA+  SL+ GF++ L + WA    N +L T RG   T AR L A+
Sbjct:  140 GKGEGITITAYAAGHLLGGTVWKITKDTED--IIYAVDYHHRKERHLSGTVLETFVRPAVLITDAYNALSNQAFKKERDHLFIDSIMSTLRGNGSVLIPVETAGRVLELILYLEQHWATERLA-YPLVFLTHVSYHTIDTAKSS-------LEWMSDTISKTFDTSRDNAFEVKYINLKHSREEFDSMLTKGPQVVLASTASLEAGFARDLFVEWAGDPKNLVLFTERGPAGTLARVLQAE 370          
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: B3S6C6_TRIAD (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Trichoplax TaxID=10227 RepID=B3S6C6_TRIAD)

HSP 1 Score: 208 bits (529), Expect = 4.620e-58
Identity = 112/239 (46.86%), Postives = 154/239 (64.44%), Query Frame = 1
Query:    1 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALTGGKSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQKHR-LGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLL 714
            G+G G+TITPYAAG M+G  +W++    E+ DI+YA  YNH +ERHL  S L TLT PS+LITDA+NA      R+ R+ +LIS V++ +R GGNVL+  DTAGRVLEL +LLD  W+K   L  Y + LL++ ++N  EFAKSQ       +EWM + +  AF+  R+NPF+ + + + HSL EL  L  +PKVVLA+   L  GF++ L L+WA    N  + TGR    T  R++L
Sbjct:  139 GKGNGLTITPYAAGHMVGGTIWKIIKDGEE-DIIYAVDYNHKKERHLNGSVLETLTHPSLLITDAYNAQYNQAKRRDRDQKLISRVLNALRSGGNVLIAVDTAGRVLELSLLLDHLWRKDPGLSAYPIALLNHVSYNVVEFAKSQ-------VEWMCDKVLVAFEDNRNNPFQFKYIQLCHSLNELSGLP-EPKVVLASSPDLTCGFARDLFLQWAGNSKNLTIFTGRSSPGTLGRHIL 368          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQA4_ECTSI1.000e-13884.29Cleavage and polyadenylation specificity factor su... [more]
A0A836CFV8_9STRA3.560e-9163.60Cleavage and polyadenylation specificity factor su... [more]
A0A6U9RRA8_9CHLO4.710e-6749.59Cleavage and polyadenylation specificity factor su... [more]
L8GYA6_ACACA1.760e-6650.00Cleavage and polyadenylation specificity factor su... [more]
A0A7S0N1Z8_9CHLO5.920e-6145.53Cleavage and polyadenylation specificity factor su... [more]
A0A6B2KYM6_9EUKA4.940e-5948.32Cleavage and polyadenylation specificity factor su... [more]
A7RPX1_NEMVE5.800e-5944.66Cleavage and polyadenylation specificity factor su... [more]
A0A2R6XNT6_MARPO6.430e-5945.83Cleavage and polyadenylation specificity factor su... [more]
A0A388KIQ1_CHABU4.340e-5845.64Cleavage and polyadenylation specificity factor su... [more]
B3S6C6_TRIAD4.620e-5846.86Cleavage and polyadenylation specificity factor su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10133contigH-canaliculatus_F_contig10133:15..3652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score427.9
Seed ortholog evalue3.9e-117
Seed eggNOG ortholog2880.D7FQA4
Preferred nameCPSF2
KEGG koko:K14402,ko:K17606
KEGG Pathwayko03015,ko04136,ko04138,ko04140,map03015,map04136,map04138,map04140
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005847,GO:0005849,GO:0005911,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006398,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0031047,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0040029,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG1236@1,KOG1135@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03019
Hectar predicted targeting categoryother localisation
Exons5
Model size927
Cds size927
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10133.158.1prot_H-canaliculatus_F_contig10133.158.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10133 15..3652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928642.7075408-CDS-H-canaliculatus_F_contig10133:14..3621622928642.7075408-CDS-H-canaliculatus_F_contig10133:14..362Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10133 15..362 -
1696845509.5059464-CDS-H-canaliculatus_F_contig10133:14..3621696845509.5059464-CDS-H-canaliculatus_F_contig10133:14..362Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10133 15..362 -
1622928642.7254272-CDS-H-canaliculatus_F_contig10133:978..11041622928642.7254272-CDS-H-canaliculatus_F_contig10133:978..1104Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10133 979..1104 -
1696845509.530956-CDS-H-canaliculatus_F_contig10133:978..11041696845509.530956-CDS-H-canaliculatus_F_contig10133:978..1104Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10133 979..1104 -
1622928642.7389903-CDS-H-canaliculatus_F_contig10133:1876..20191622928642.7389903-CDS-H-canaliculatus_F_contig10133:1876..2019Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10133 1877..2019 -
1696845509.5428798-CDS-H-canaliculatus_F_contig10133:1876..20191696845509.5428798-CDS-H-canaliculatus_F_contig10133:1876..2019Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10133 1877..2019 -
1622928642.7523327-CDS-H-canaliculatus_F_contig10133:2379..25551622928642.7523327-CDS-H-canaliculatus_F_contig10133:2379..2555Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10133 2380..2555 -
1696845509.5521357-CDS-H-canaliculatus_F_contig10133:2379..25551696845509.5521357-CDS-H-canaliculatus_F_contig10133:2379..2555Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10133 2380..2555 -
1622928642.7701912-CDS-H-canaliculatus_F_contig10133:3518..36521622928642.7701912-CDS-H-canaliculatus_F_contig10133:3518..3652Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10133 3519..3652 -
1696845509.5617683-CDS-H-canaliculatus_F_contig10133:3518..36521696845509.5617683-CDS-H-canaliculatus_F_contig10133:3518..3652Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10133 3519..3652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10133.158.1

>prot_H-canaliculatus_F_contig10133.158.1 ID=prot_H-canaliculatus_F_contig10133.158.1|Name=mRNA_H-canaliculatus_F_contig10133.158.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=309bp
GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPS
ALSTLTRPSVLITDAHNALTGGKSRKWREARLISTVMDTVRGGGNVLLPT
DTAGRVLELLVLLDDHWQKHRLGNYKLVLLHNTAFNTSEFAKSQASKQGF
RLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDM
SLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLLAKMEYRENVAET
RAAAKAAAAAAAASGARMGVRSGAIRVGVGVGVGVGDDDGEDDRDEGDEE
APLVGEVKV
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mRNA from alignment at H-canaliculatus_F_contig10133:15..3652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10133.158.1 ID=mRNA_H-canaliculatus_F_contig10133.158.1|Name=mRNA_H-canaliculatus_F_contig10133.158.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3638bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10133:15..3652- (Hapterophycus canaliculatus Oshoro5f female)
GGTCGAGGTGCGGGGGTGACCATCACGCCTTACGCAGCGGGGCGCATGAT TGGAGCCGCCGTGTGGCGCGTGTCTTGGCAGACCGAGGACAACGATATCG TGTACGCTACGGCGTACAACCACAACCGGGAGAGGTGAGACCAAGACAAG ATAGCGATGCGCCGTGCCGTGTTTTGGTTGTCGCTGCGCCTGTTGGCCGT GTTCTTCGTGTGTGATGTGTTTCAGGGCCTTTCGTGCCACGGGAGAACTC ATCCCTCGTTCCGGTTGCGATGGCAGGCTACGCGACGGTCAGGGCGGTTT TTGTCTTGAGACAGACACACAACGATTTGCAGCAACAGCGGCGATGACAG CGTACACAATCAACTCGACGTTAACCGAATCGTTATGCCCGAAGGACGCT GTTATCGCACCAAAAGAGGAGAAGACGAAGAGAAATGAAAGTGAGCCGCG CCTCCTTCCTTGGCAACATCCGACAAGCATTTTTTCCTGCTGACTTGATG CAGTGCAGAGATGTTAGAGTATGAGAACGACAGCGAACACACGCATGGTT GTGACGGACCACACGCAAAATATTTTCCTGTGTTCGGTGATTGGAACCTC CGCGTAGAACGCAAAACCCCGTCCCGACCCTGTCTTACCCCCCTCCTCCT CCTCTACCACGCACGGCACAAGGATAACGGTATGCATGGCGATGAACTTT CCCCCGGTCCCTCGTTTTCACGCTCCATCTCCCGCCGGGCTCATCACCTG TATCATGTGACGCTGTACGTGCTTCATCATCATCAACATCAGAAACCTCC CCCACCCGGCCGCCGGCGTCGACCACCCTTCACCTGTCCACCTGAGCGGT GCCACTCCTCCTGTTTCGCATCTCGCATGCGCCCTTCCCACCTCTCCCCC CCACCCGCGCCCCGTCCGTCGCCCCCGCTCCTTGTTCGCCTCCGCGCCCT CGCGTGTGCTCGCACGTGTGACGATCGCCACGCCCGGGCGTGCCATCGCG GTGGCCATCCCGTCCCATCCCATCCCATCCCGTGCACTCCGCGGGGCAAT GCCGACGTCTCCTCGTGGTGACAACGTCCTTCGAACCTCCGGGACAGACA TCTCCGGCCGTCGGCCCTGAGCACCCTGACCCGTCCAAGCGTGCTCATCA CCGACGCTCACAACGCCCTCACCGGCGGCAAGAGCCGGAAGTGGCGGGAG GCCCGCCTGATATCCACCGTCATGGATACCGTTAGGGGCGGGGGAAACGT GCTCTTGCCCACGGACACGGCGGGTGAGCCGTCGTCGTCATCGTGTGTCC GGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTAGTTGTGCCT GTCTTAGCTTGTGGTCGGCGCCCACCTCTCTCGAGCCCCCTGCCGATGAA TCGATAGAGGTGACGCCCGTCCGTCCTGATTGCGAAGAAGGGGCTAAAGA GCAGCTGCGTGATCAACGCCATACGTGCACGTGGCCGCGCCCGGAGTGCA GGGTTTTGTGTTTTCATGCCCCGCCGTAGACCGCTGGGTGACAAATGAAC CACGTGTACTCTTTTGCCTGCCTGCCTGCCTGCCTGCCTGTCTATCGTTC GGGCTATCTTGTGTTTGATTTTGTGGGACGAAGGTCGCGTGCTGGAGCTG CTGGTGTTGCTGGACGATCACTGGCAGAAGCATCGGCTCGGCAACTATAA GCTCGTGCTCCTGCACAACACGGCCTTCAACACGAGCGAGTTCGCCAAAA GCCAGGCGAGCAAGCAGGGGTTCCGAGTGCAAGAACAAAAACGAAAACAA TGATCAAATTGCGCGTAGTTGGAACGTCGGAAGCCCCTTGCTGATGTGTT GGCAAGCACGGTGGCGGGGGACTGTGCCAGGCGGTGAGAGAGTCATCGTC GATGCTGCTTGCGGTGAGGGATACCCCTGCGCTACTGCGTAAAATGGAAC AATGAGCGATCGACGATGGAGAAGGATGTCAATCGAAAGCGGTCGCTCGC TTGCGAAGGAAGGGGGGCCAGCTGTCTTACTCCTGCCCCAACAATCACAA CATGCGTTCACGGCAGCGGCGGAGTCGCGAGATAAAGACGCATTCACCAA GTTATTCATGTCAAGTTGGGTTGTTGGAGGGACGTACGGACGCCTGTCTC TAGATGAGGGATCTAATACAAGACGAGATCGCCGCCTGTGCCTTTCCTTC TCTTTCCAGTAGTTTCAAGTACTTGTAGTGCTTGCTCGAGAAAAACTGAG GCGTTTCAGCGTCATCACTTGCAAGCATCGTTCAGGAGGCACCTAACGTC GGGAAGGCACGGCGTTCTTCGATCGGTACCTTCGATCGACGTTTTCCAAC CTGCACGTATTTCGCTTAGTCTCTCGGCTATGGCATGTCCTCCCACGCTG CACAGTTCTTTTCGAGGATCTGCTTTGCTAGTGTGCTTGGCGATCGCGTG TTTGGCTGATTTCTCTCCTGTCGCCATGTGTTGCCTTTGCCTTTTTGCTC TCTTTCTTCTGCTCATGTGCATTCCCCCGCCGTTTTTTGTCGCTGCAGCT GGAGTGGATGAGTGAGGATATCGGCAGGGCCTTCGACCTACAGCGGAGCA ACCCGTTCGAGCTCAGAAACGTCCACATCATGCACAGCTTGGAAGAACTC GACGAGCTAGGGAACGATCCAAAGGTGTGCTGCTGCAACAAAGCCCACAT CGCCGTCCACGACGACGTTTGCTCATTTCCTCGATCTGCGTCGCTCGTCC GTCCGACCGGCCGACAGATTAACTGAAACTGAACGGCGGAAGTTGTGTGG TGTAGGGTGTGTTGTGGTCGTCACCGTCGTCATGAACGCCGCCGTCGTCG TTGCTGCCGTCTTCGTCGTCGCTGCCGTTGTCACTCTTGATGTTTGCAAC TACTGTTCGCGCTCGTTTCTGCGCTTGTTTGCTCGTTGTGTTCTTTATAA GAAAGAGTCAACAAAGAAAATTCGCTTGGCTTGGTTGTTGTTGCTTCTCG GGACCCGCGAAAGGGAGCAAAAAGAAAAAGAAAAATATGAAAAAGATAAA AAATATTAAAAAAAGATGAACAGAACAACTCGCGAGCCTCGTACACGGCG TGTCTACCGTGCGCCCCTGCTCTCCCGTCATCGCGGCGGTGTTCAAGCAC GAGACGTAGACATCCTGGGTGCCGCGGCGATGGGGCGCCCATCCCCCATT TTCCTATTGTTTCCGTCGGTAAGAAAGATCGAGTGCCGCACAGCCGAGCC TAGCAGCATCGACAGCCCATCTGTGTATTTATTTCTCCAGGTGGTTCTGG CGACGGACATGTCTCTCGACTACGGCTTCTCGAAGGCCCTCCTGCTCCGG TGGGCGTCCGGGGGCGCCAACACCATTCTCCTCACGGGGAGGGGGCACGG GAGCACAACCGCGCGAAATCTACTCGCCAAGATGGAGTACAGGGAGAACG TCGCGGAGACGAGAGCGGCTGCGAAGGCAGCGGCGGCGGCGGCGGCCGCG AGCGGGGCGAGGATGGGGGTGCGGTCGGGCGCGATCAGGGTGGGGGTGGG GGTTGGGGTGGGGGTCGGTGATGACGACGGGGAAGATGATAGGGACGAGG GGGACGAAGAGGCGCCTCTCGTGGGGGAGGTCAAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10133:15..3652-

>mRNA_H-canaliculatus_F_contig10133.158.1 ID=mRNA_H-canaliculatus_F_contig10133.158.1|Name=mRNA_H-canaliculatus_F_contig10133.158.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1854bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10133:15..3652- (Hapterophycus canaliculatus Oshoro5f female)
GGTCGAGGTGCGGGGGTGACCATCACGCCTTACGCAGCGGGGCGCATGAT
TGGAGCCGCCGTGTGGCGCGTGTCTTGGCAGACCGAGGACAACGATATCG
TGTACGCTACGGCGTACAACCACAACCGGGAGAGGGTCGAGGTGCGGGGG
TGACCATCACGCCTTACGCAGCGGGGCGCATGATTGGAGCCGCCGTGTGG
CGCGTGTCTTGGCAGACCGAGGACAACGATATCGTGTACGCTACGGCGTA
CAACCACAACCGGGAGAGACATCTCCGGCCGTCGGCCCTGAGCACCCTGA
CCCGTCCAAGCGTGCTCATCACCGACGCTCACAACGCCCTCACCGGCGGC
AAGAGCCGGAAGTGGCGGGAGGCCCGCCTGATATCCACCGTCATGGATAC
CGTTAGGGGCGGGGGAAACGTGCTCTTGCCCACGGACACGGCGGACATCT
CCGGCCGTCGGCCCTGAGCACCCTGACCCGTCCAAGCGTGCTCATCACCG
ACGCTCACAACGCCCTCACCGGCGGCAAGAGCCGGAAGTGGCGGGAGGCC
CGCCTGATATCCACCGTCATGGATACCGTTAGGGGCGGGGGAAACGTGCT
CTTGCCCACGGACACGGCGGGTCGCGTGCTGGAGCTGCTGGTGTTGCTGG
ACGATCACTGGCAGAAGCATCGGCTCGGCAACTATAAGCTCGTGCTCCTG
CACAACACGGCCTTCAACACGAGCGAGTTCGCCAAAAGCCAGGCGAGCAA
GCAGGGGTTCCGAGTCGCGTGCTGGAGCTGCTGGTGTTGCTGGACGATCA
CTGGCAGAAGCATCGGCTCGGCAACTATAAGCTCGTGCTCCTGCACAACA
CGGCCTTCAACACGAGCGAGTTCGCCAAAAGCCAGGCGAGCAAGCAGGGG
TTCCGACTGGAGTGGATGAGTGAGGATATCGGCAGGGCCTTCGACCTACA
GCGGAGCAACCCGTTCGAGCTCAGAAACGTCCACATCATGCACAGCTTGG
AAGAACTCGACGAGCTAGGGAACGATCCAAAGCTGGAGTGGATGAGTGAG
GATATCGGCAGGGCCTTCGACCTACAGCGGAGCAACCCGTTCGAGCTCAG
AAACGTCCACATCATGCACAGCTTGGAAGAACTCGACGAGCTAGGGAACG
ATCCAAAGGTGGTTCTGGCGACGGACATGTCTCTCGACTACGGCTTCTCG
AAGGCCCTCCTGCTCCGGTGGGCGTCCGGGGGCGCCAACACCATTCTCCT
CACGGGGAGGGGGCACGGGAGCACAACCGCGCGAAATCTACTCGCCAAGA
TGGAGTACAGGGAGAACGTCGCGGAGACGAGAGCGGCTGCGAAGGCAGCG
GCGGCGGCGGCGGCCGCGAGCGGGGCGAGGATGGGGGTGCGGTCGGGCGC
GATCAGGGTGGGGGTGGGGGTTGGGGTGGGGGTCGGTGATGACGACGGGG
AAGATGATAGGGACGAGGGGGACGAAGAGGCGCCTCTCGTGGGGGAGGTC
AAGGTGGTGGTTCTGGCGACGGACATGTCTCTCGACTACGGCTTCTCGAA
GGCCCTCCTGCTCCGGTGGGCGTCCGGGGGCGCCAACACCATTCTCCTCA
CGGGGAGGGGGCACGGGAGCACAACCGCGCGAAATCTACTCGCCAAGATG
GAGTACAGGGAGAACGTCGCGGAGACGAGAGCGGCTGCGAAGGCAGCGGC
GGCGGCGGCGGCCGCGAGCGGGGCGAGGATGGGGGTGCGGTCGGGCGCGA
TCAGGGTGGGGGTGGGGGTTGGGGTGGGGGTCGGTGATGACGACGGGGAA
GATGATAGGGACGAGGGGGACGAAGAGGCGCCTCTCGTGGGGGAGGTCAA
GGTG
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