mRNA_H-canaliculatus_F_contig10129.154.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10129.154.1
Unique NamemRNA_H-canaliculatus_F_contig10129.154.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10129.154.1 vs. uniprot
Match: A0A6H5K5R8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R8_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.140e-22
Identity = 52/118 (44.07%), Postives = 76/118 (64.41%), Query Frame = 2 
Query:   26 SSLPYCIRAVRLVVVYNRDYRTKYMRFVKRKPMMYTSAAISAAIAVRASLFYGNKPSYYSSFSGGHQCFYWNDVLLSVSLLGVLGVPLVLLGAQLVQVNDAFKVGEEIVQVAVGCTLC 379
            ++ PY IRAVRLVV YNR YR KY RFVKR   +   A     + +RA +F+G  P++YSS     +CFYW+D++L  ++L   G P+  L  ++ +V+DAFK+ EE+  V +GC+ C
Sbjct:    3 ATTPYVIRAVRLVVAYNRKYRLKYARFVKRNYALGFWAVGCIGLTIRAGIFFGTDPAHYSSDM--RECFYWDDIMLMGAVLLFGGAPMSCLAIRISRVHDAFKLREELCFVFIGCSCC 118
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BLAST of mRNA_H-canaliculatus_F_contig10129.154.1 vs. uniprot
Match: D8LQY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY9_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.830e-21
Identity = 50/110 (45.45%), Postives = 72/110 (65.45%), Query Frame = 2 
Query:   44 IRAVRLVVVYNRDYRTKYMRFVKRKPMMYTSAAISAAIAVRASLFYGNKPSYYSSFSGGHQCFYWNDVLLSVSLLGVLGVPLVLLGAQLVQVNDAFKVGEEIVQVAVGCT 373
            IRA+RLV+ YNR YR KY +FVKRK  +   A IS  + VRA LF+G  P++YSS     +CFYW+D+ +    L   G P+ LL  ++ +VNDAF++ EE+ +  +GC+
Sbjct:    2 IRAIRLVIAYNRKYRLKYAKFVKRKRALGFWAVISIGLTVRAGLFFGTDPAHYSSDM--RECFYWDDIFVVGIGLIFGGAPVSLLVIRISRVNDAFQLREELCRTIMGCS 109
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BLAST of mRNA_H-canaliculatus_F_contig10129.154.1 vs. uniprot
Match: D8LQX1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX1_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 3.100e-9
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 2 
Query:   32 LPYCIRAVRLVVVYNRDYRTKYMRFVKRKPMMYTSAAISAAIAVRASLFYGNKPSYYSS 208
            +PY IRAVRLV+ YNR YR KY +FVKRK            + +RA LF+G+ P++YSS
Sbjct:    1 MPYFIRAVRLVIAYNRKYRLKYAKFVKRKHATGVLVLTFIVLTIRAGLFFGDDPAHYSS 59
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10129.154.1 vs. uniprot
Match: A0A6H5KE83_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE83_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 6.670e-8
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 2 
Query:   26 SSLPYCIRAVRLVVVYNRDYRTKYMRFVKRKPMMYTSAAISAAIAVRASLFYGNKPSYYS 205
            ++ PY IRAVRLVV YNR  R KY RFVKR   +   A     + +RA +F+G  P++YS
Sbjct:    3 ATTPYVIRAVRLVVAYNRKCRLKYARFVKRNHALGFGAVACIGLTIRAGIFFGTDPAHYS 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10129.154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K5R8_9PHAE1.140e-2244.07RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQY9_ECTSI1.830e-2145.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LQX1_ECTSI3.100e-950.85RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KE83_9PHAE6.670e-848.33RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10129contigH-canaliculatus_F_contig10129:2729..4768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons4
Model size470
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10129.154.1prot_H-canaliculatus_F_contig10129.154.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10129 3087..4701 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928642.120236-UTR-H-canaliculatus_F_contig10129:2728..28061622928642.120236-UTR-H-canaliculatus_F_contig10129:2728..2806Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10129 2729..2806 +
1696845509.2649662-UTR-H-canaliculatus_F_contig10129:2728..28061696845509.2649662-UTR-H-canaliculatus_F_contig10129:2728..2806Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10129 2729..2806 +
1622928642.2116475-UTR-H-canaliculatus_F_contig10129:3067..30861622928642.2116475-UTR-H-canaliculatus_F_contig10129:3067..3086Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10129 3068..3086 +
1696845509.27513-UTR-H-canaliculatus_F_contig10129:3067..30861696845509.27513-UTR-H-canaliculatus_F_contig10129:3067..3086Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10129 3068..3086 +
1622928642.2644086-UTR-H-canaliculatus_F_contig10129:4701..47681622928642.2644086-UTR-H-canaliculatus_F_contig10129:4701..4768Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10129 4702..4768 +
1696845509.310961-UTR-H-canaliculatus_F_contig10129:4701..47681696845509.310961-UTR-H-canaliculatus_F_contig10129:4701..4768Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10129 4702..4768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928642.224003-CDS-H-canaliculatus_F_contig10129:3086..31961622928642.224003-CDS-H-canaliculatus_F_contig10129:3086..3196Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10129 3087..3196 +
1696845509.2842567-CDS-H-canaliculatus_F_contig10129:3086..31961696845509.2842567-CDS-H-canaliculatus_F_contig10129:3086..3196Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10129 3087..3196 +
1622928642.2372348-CDS-H-canaliculatus_F_contig10129:3518..36941622928642.2372348-CDS-H-canaliculatus_F_contig10129:3518..3694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10129 3519..3694 +
1696845509.2930894-CDS-H-canaliculatus_F_contig10129:3518..36941696845509.2930894-CDS-H-canaliculatus_F_contig10129:3518..3694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10129 3519..3694 +
1622928642.2497957-CDS-H-canaliculatus_F_contig10129:4681..47011622928642.2497957-CDS-H-canaliculatus_F_contig10129:4681..4701Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10129 4682..4701 +
1696845509.3026862-CDS-H-canaliculatus_F_contig10129:4681..47011696845509.3026862-CDS-H-canaliculatus_F_contig10129:4681..4701Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10129 4682..4701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10129.154.1

>prot_H-canaliculatus_F_contig10129.154.1 ID=prot_H-canaliculatus_F_contig10129.154.1|Name=mRNA_H-canaliculatus_F_contig10129.154.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=102bp
MRFVKRKPMMYTSAAISAAIAVRASLFYGNKPSYYSSFSGGHQCFYWNDV
LLSVSLLGVLGVPLVLLGAQLVQVNDAFKVGEEIVQVAVGCTLCQCCWSR
W*
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mRNA from alignment at H-canaliculatus_F_contig10129:2729..4768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10129.154.1 ID=mRNA_H-canaliculatus_F_contig10129.154.1|Name=mRNA_H-canaliculatus_F_contig10129.154.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2040bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10129:2729..4768+ (Hapterophycus canaliculatus Oshoro5f female)
CTCGCTCTCAACAGCGTACGTGCTTTCGTCCCTCCCTTACTGCATCCGGG
CTGTCCGCCTGGTTGTGGTGTACAACAGGTGCATCGTTGTCGTCGTCGTT
ACTTTTATTGTTGTTTCTGTTGCCCACCCAAGCCCACCGCCAAGAATGCA
CCCCCTTCAAGTAACCCTTCTTCTGGTAGTGCGCCGTTTGGTGCTCACTT
GGTGCGAGAGACGTACATACCCCGAGTTCAGCAGTTAATCTAGCAACACG
TGTACGCCAAGCAAGGGGGAGAACATGTATTGTCACGCAGTTATCTGATT
GATCCAAAAGCCTCTACGCCTTGTGTTTCCACGTTGCAGAGATTACCGGA
CCAAGTACATGCGTTTCGTCAAGCGAAAGCCCATGATGTACACTTCGGCG
GCGATATCTGCAGCGATTGCCGTTCGCGCGTCTCTGTTCTACGGTAACAA
GCCCTCCTACTATTCAAGGTACTACGATGACAAGACCATGAGAAGACGTA
CTTGTGGCGGCAAGTCGTGTCGTCGAGACGAAAATAGACAAACCTGTAGG
CAAACAGGCCGTATGACGTCCCCGACGGCCCTGGTTCCACCCTTCACCTG
ATAACCCACAACATGTAGGCCGCCGAACCGCCGACCGAGCAATTAAGTGC
AAGTCTTCCGAAGGAAGCACGAATCCGCTGTCTAAGCTTCTGGTCACATG
TTCGTTTGAGGACTGACGCGGAACCACAGCAAACCCGCGTCACCGATTGC
AACTCGGACCCTCGACCCCGCCGCCCGCTTCGATCGTTAGTTTCAGCGGC
GGACACCAGTGCTTCTATTGGAACGACGTTCTTCTTTCAGTATCTCTGCT
TGGGGTTTTGGGGGTGCCCCTCGTTTTACTCGGCGCCCAACTGGTCCAAG
TTAACGACGCCTTCAAAGTTGGCGAAGAGATCGTGCAAGTGGCCGTCGGC
TGTACCCTTTGTCAATGTGAGTAGGAGTAAACGACGGCCAGCACCCAAAC
CACGCGGGTGGGATTTGAAGATTGTAGAGATCTCGCACGTTTCGCTTTTA
AATTCGTTCCCCTTTTCTTGGCATCTTAAGAGCCAGCGCCAGGCGTACAA
CGGAAAGGCGAAGGGAACGGAACATCCTTCGAGGACACAAGTCGCGTTGC
TTTCCTCGTGTGACACGGCCACGTTGCTTAGGCCCTAGATCGCTCTTTTT
GCCACGAATTGTAGAAACGTTTCCCATATGCTCGTTCTCCAACTTTGGAG
AGCTGCACTGACGGCAGTTTCCCCGCTGTATCGTCGTCGTCCGTGACGGC
TGTTCTTCGGCACGTATTTCATCCTGCCCTGTCTACCCTTGGTTGTCACG
ACCCTCGATTATTTGTCATCCAGGGATCATCACAGCTATTCAGATACTCG
TGATTTTCAAGCTCTTACCAGACTCACGCCTAGTTCATGTCGTGGGCGAG
ATTTTGGTGCTCCTGTGGGGGATGATTGCCGGGATATCGGGGTGAGGCTA
GCTGATTTCAGGTCTCAGATATAGCCTGAAATCCGTGGGCGCATTCAGGC
TGTGTGGTATCACACGTCGTTCATTCCCGCGTGTCCACTTCCTCTCTCAC
GTCCTATCTTGGTCGAGAAGAACGCTAGGAGGGTCAGTGAAATTTCTTCA
AATCACAAAATTTTAGAGGTTCGTCGGTCCAAGCACAGTCCTGATTGCGT
CGCCATAGTGTTTGTTGGTTTCAGGCGCCGCGGCGGGTTGCTTGCTTGTA
TCGTCCGGCCTCCACGCCGTCCTGTGTAGAGCGCTTGCGTATAACACAAA
TGGCTTCACTCCGGACCTCACCCGTCCACGGTAGAACTGAAGCCTAGTTA
TTGTAGACGAGAGTATTATTTCACCTGCCTGTCAGTACAACGTCAAACAG
CTCCTGGGTTTCTATCCTGTTACCTGCGTATGAAATCGGATCACGCGTCG
CAGGTTGTTGGTCCCGCTGGTAAGAATACACCGCCAAAACCATTGGAGTT
GGTTTGCGTACGCCGTCTCTCCCGCCGAACACGATGACCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10129:2729..4768+

>mRNA_H-canaliculatus_F_contig10129.154.1 ID=mRNA_H-canaliculatus_F_contig10129.154.1|Name=mRNA_H-canaliculatus_F_contig10129.154.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=612bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10129:2729..4768+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGTTTCGTCAAGCGAAAGCCCATGATGTACACTTCGGCGGCGATATC
TGCAGCGATTGCCGTTCGCGCGTCTCTGTTCTACGGTAACAAGCCCTCCT
ACTATTCAAGATGCGTTTCGTCAAGCGAAAGCCCATGATGTACACTTCGG
CGGCGATATCTGCAGCGATTGCCGTTCGCGCGTCTCTGTTCTACGGTAAC
AAGCCCTCCTACTATTCAAGTTTCAGCGGCGGACACCAGTGCTTCTATTG
GAACGACGTTCTTCTTTCAGTATCTCTGCTTGGGGTTTTGGGGGTGCCCC
TCGTTTTACTCGGCGCCCAACTGGTCCAAGTTAACGACGCCTTCAAAGTT
GGCGAAGAGATCGTGCAAGTGGCCGTCGGCTGTACCCTTTGTCAATTTTC
AGCGGCGGACACCAGTGCTTCTATTGGAACGACGTTCTTCTTTCAGTATC
TCTGCTTGGGGTTTTGGGGGTGCCCCTCGTTTTACTCGGCGCCCAACTGG
TCCAAGTTAACGACGCCTTCAAAGTTGGCGAAGAGATCGTGCAAGTGGCC
GTCGGCTGTACCCTTTGTCAATGTTGTTGGTCCCGCTGGTAAGTTGTTGG
TCCCGCTGGTAA
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