mRNA_H-canaliculatus_F_contig10121.151.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10121.151.1
Unique NamemRNA_H-canaliculatus_F_contig10121.151.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10121.151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10121contigH-canaliculatus_F_contig10121:3407..4068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size664
Cds size477
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928641.8329039-CDS-H-canaliculatus_F_contig10121:3406..38831622928641.8329039-CDS-H-canaliculatus_F_contig10121:3406..3883Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10121 3407..3883 +
1696845509.167367-CDS-H-canaliculatus_F_contig10121:3406..38831696845509.167367-CDS-H-canaliculatus_F_contig10121:3406..3883Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10121 3407..3883 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928641.8460963-UTR-H-canaliculatus_F_contig10121:3883..40681622928641.8460963-UTR-H-canaliculatus_F_contig10121:3883..4068Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10121 3884..4068 +
1696845509.178012-UTR-H-canaliculatus_F_contig10121:3883..40681696845509.178012-UTR-H-canaliculatus_F_contig10121:3883..4068Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10121 3884..4068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10121.151.1prot_H-canaliculatus_F_contig10121.151.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10121 3407..3883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10121.151.1

>prot_H-canaliculatus_F_contig10121.151.1 ID=prot_H-canaliculatus_F_contig10121.151.1|Name=mRNA_H-canaliculatus_F_contig10121.151.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=159bp
RCRRLSSTRSVFCSSRFSKKRYFVFQGAWCRDTALGPCAVGRRRKPCVRG
FVLVPPRGFGTTVFCCPFSCCRPPHRVTTYLCHAASAHPVLPLVCCKTRH
VDATDASIVGAGCTSWRRCGISNAPPPLISPACLCLLATLLPLVLLIPSC
VRLFSCLR*
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mRNA from alignment at H-canaliculatus_F_contig10121:3407..4068+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10121.151.1 ID=mRNA_H-canaliculatus_F_contig10121.151.1|Name=mRNA_H-canaliculatus_F_contig10121.151.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=662bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10121:3407..4068+ (Hapterophycus canaliculatus Oshoro5f female)
CGTTGTCGTCGTCTTTCATCGACGCGATCAGTCTTCTGTTCATCCCGATT
CTCAAAAAAGAGATATTTTGTCTTTCAAGGGGCATGGTGTCGGGATACGG
CTCTAGGTCCGTGCGCAGTGGGCCGTCGGCGGAAGCCCTGCGTCCGAGGT
TTTGTCTTGGTGCCTCCTAGAGGTTTTGGTACTACGGTGTTTTGCTGCCC
TTTCTCTTGTTGTCGGCCCCCCCACCGCGTTACGACTTACCTTTGTCATG
CTGCGTCCGCCCACCCCGTCCTTCCTTTGGTGTGCTGCAAAACGAGGCAC
GTCGACGCTACTGACGCATCGATCGTTGGTGCAGGATGCACCTCGTGGAG
ACGTTGCGGCATCTCCAACGCCCCGCCACCGCTCATCTCTCCCGCATGCT
TGTGTTTATTGGCCACCCTGTTGCCTCTGGTACTCCTGATACCGTCCTGC
GTGCGATTATTCTCCTGCCTGCGATGACCATGCGTTGAGGGTTTCACGCC
TTTGTCCCTGAGGCGAAGGCTGTCTCGTGCCTCTACCGTCTGGGGGGTCT
CGCCTCCAAGCCTGCTCCAACACGCTTGAATTTGACAGCTCTACGGGATG
CACCCCTGCGCCAGAGCTTCAAGGCTCCAAAGCTTCACGTCCAACTATGC
CGTACCCCTCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10121:3407..4068+

>mRNA_H-canaliculatus_F_contig10121.151.1 ID=mRNA_H-canaliculatus_F_contig10121.151.1|Name=mRNA_H-canaliculatus_F_contig10121.151.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=954bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10121:3407..4068+ (Hapterophycus canaliculatus Oshoro5f female)
CGTTGTCGTCGTCTTTCATCGACGCGATCAGTCTTCTGTTCATCCCGATT
CTCAAAAAAGAGATATTTTGTCTTTCAAGGGGCATGGTGTCGGGATACGG
CTCTAGGTCCGTGCGCAGTGGGCCGTCGGCGGAAGCCCTGCGTCCGAGGT
TTTGTCTTGGTGCCTCCTAGAGGTTTTGGTACTACGGTGTTTTGCTGCCC
TTTCTCTTGTTGTCGGCCCCCCCACCGCGTTACGACTTACCTTTGTCATG
CTGCGTCCGCCCACCCCGTCCTTCCTTTGGTGTGCTGCAAAACGAGGCAC
GTCGACGCTACTGACGCATCGATCGTTGGTGCAGGATGCACCTCGTGGAG
ACGTTGCGGCATCTCCAACGCCCCGCCACCGCTCATCTCTCCCGCATGCT
TGTGTTTATTGGCCACCCTGTTGCCTCTGGTACTCCTGATACCGTCCTGC
GTGCGATTATTCTCCTGCCTGCGATGACGTTGTCGTCGTCTTTCATCGAC
GCGATCAGTCTTCTGTTCATCCCGATTCTCAAAAAAGAGATATTTTGTCT
TTCAAGGGGCATGGTGTCGGGATACGGCTCTAGGTCCGTGCGCAGTGGGC
CGTCGGCGGAAGCCCTGCGTCCGAGGTTTTGTCTTGGTGCCTCCTAGAGG
TTTTGGTACTACGGTGTTTTGCTGCCCTTTCTCTTGTTGTCGGCCCCCCC
ACCGCGTTACGACTTACCTTTGTCATGCTGCGTCCGCCCACCCCGTCCTT
CCTTTGGTGTGCTGCAAAACGAGGCACGTCGACGCTACTGACGCATCGAT
CGTTGGTGCAGGATGCACCTCGTGGAGACGTTGCGGCATCTCCAACGCCC
CGCCACCGCTCATCTCTCCCGCATGCTTGTGTTTATTGGCCACCCTGTTG
CCTCTGGTACTCCTGATACCGTCCTGCGTGCGATTATTCTCCTGCCTGCG
ATGA
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