mRNA_H-canaliculatus_F_contig11660.1469.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11660.1469.1
Unique NamemRNA_H-canaliculatus_F_contig11660.1469.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11660.1469.1 vs. uniprot
Match: A0A6H5L8Q2_9PHAE (Nop domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8Q2_9PHAE)

HSP 1 Score: 463 bits (1192), Expect = 9.080e-160
Identity = 239/259 (92.28%), Postives = 250/259 (96.53%), Query Frame = 1
Query:    1 QDIDPEMVEVHRFVVDSYSQKFPELDSLIPQPADYVRTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEQALQECLKGCEEYEALVAAKASILDFVETRMTSMAPNVCAMVGSRITARLLALTGGLTAMSKTPSCNLQ---VMGQEKKTLSGFSSKATVSHAGLLYQSEVIQLAPPYLRNKALRVTAAKVSLASRFDSYGNDPSGHVGRQWRAEVEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 768
            QDIDPEMVEVHRFVVD YSQKFPELDSLIPQPADYVRTVQVMRNEMDMTQV+L+SALPQTTVMVVSVTGSTTSGQPLSE+ L EC+KGCEEYEAL AAKASILDFVETRMTSMAPNVCA++GSRITA+LL LTGGLTAMSKTPSCNLQ   VMGQEKKTLSGFSSKATVSHAGLLYQS+V+QLAPPYLR KALRVTAAKVSLASRFDSYGNDPSGHVGRQWRAEVEDKIEKWQE+QTAKTKKALPKPDDMPARKRGG+R
Sbjct:  170 QDIDPEMVEVHRFVVDRYSQKFPELDSLIPQPADYVRTVQVMRNEMDMTQVELDSALPQTTVMVVSVTGSTTSGQPLSEEDLHECIKGCEEYEALAAAKASILDFVETRMTSMAPNVCALIGSRITAQLLGLTGGLTAMSKTPSCNLQEFPVMGQEKKTLSGFSSKATVSHAGLLYQSDVVQLAPPYLRTKALRVTAAKVSLASRFDSYGNDPSGHVGRQWRAEVEDKIEKWQEMQTAKTKKALPKPDDMPARKRGGRR 428          
BLAST of mRNA_H-canaliculatus_F_contig11660.1469.1 vs. uniprot
Match: A0A7S2XZL3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL3_9STRA)

HSP 1 Score: 307 bits (787), Expect = 8.090e-100
Identity = 156/255 (61.18%), Postives = 200/255 (78.43%), Query Frame = 1
Query:    4 DIDPEMVEVHRFVVDSYSQKFPELDSLIPQPADYVRTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEQALQECLKGCEEYEALVAAKASILDFVETRMTSMAPNVCAMVGSRITARLLALTGGLTAMSKTPSCNLQVMGQEKKTLSGFSSKATVSHAGLLYQSEVIQLAPPYLRNKALRVTAAKVSLASRFDSYGNDPSGHVGRQWRAEVEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 768
            DID E++ VHRFV D YS+KFPEL+SL+    DY+R V+ + NEMDMT V+L   L   +VM+VSVTGSTTSGQPLS Q L +CL+G  E + L  AK SIL+FVE+RMT++APN+CA++GSR+ A+LL L+GGLT +SK PSCNLQVMGQEK+ L+G+ + A++ H GL+Y  E++Q APPYLR+KAL+VTAAK+ LA+R DS+  D  G +G++ R E+EDKIEKWQE Q AKTKKALP PD  P +KRGGKR
Sbjct:   78 DIDEEVINVHRFVCDLYSKKFPELESLLTNRLDYIRVVERIGNEMDMTLVELGDLLAPASVMLVSVTGSTTSGQPLSPQDLDQCLQGAREVQDLEQAKTSILEFVESRMTAIAPNICALIGSRLAAQLLGLSGGLTQLSKIPSCNLQVMGQEKRALAGYGAAASLPHCGLIYHCELVQDAPPYLRSKALKVTAAKLVLAARVDSFQQDMEGALGKKLRTELEDKIEKWQEPQKAKTKKALPAPDSKPKKKRGGKR 332          
BLAST of mRNA_H-canaliculatus_F_contig11660.1469.1 vs. uniprot
Match: A0A836CKH5_9STRA (Nop domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKH5_9STRA)

HSP 1 Score: 293 bits (751), Expect = 9.080e-94
Identity = 148/256 (57.81%), Postives = 203/256 (79.30%), Query Frame = 1
Query:    4 DIDPEMVEVHRFVVDSYSQKFPELDSLIPQPADYVRTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEQALQECLKGCEEYEALVAAKASILDFVETRMTSMAPNVCAMVGSRITARLLALTGGLTAMSKTPSCNLQVMGQEKKTLSGFSSKAT-VSHAGLLYQSEVIQLAPPYLRNKALRVTAAKVSLASRFDSYGNDPSGHVGRQWRAEVEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 768
            DID E+V+VHRFVVD+YS KFPEL+S++  P DY+RTVQ+M+NEMDMT++ L++ LPQT+VMVVSVTGSTT G+ L E  L+  L+GC E+ AL  AK+++L FVE +M+++APN+CA++GSRI A+L+   GGL A+S  P+CNLQ MGQE++ L+GF++ AT  +HAGL++ S+++Q AP YLR K L+V +AKV+LA R D +  DP+  VGR++R+E+E K+EKWQE   AK K+ALPKPD+ P  KRGGKR
Sbjct:  127 DIDDELVQVHRFVVDAYSPKFPELESIVTDPGDYIRTVQLMKNEMDMTRLPLDTVLPQTSVMVVSVTGSTTPGKALGEAELKRVLEGCAEFTALAEAKSTLLTFVEGKMSAIAPNMCAIIGSRIAAQLMGQAGGLAALSNIPACNLQTMGQERRHLAGFATTATGTAHAGLIFYSDLVQSAPVYLRRKLLKVASAKVTLAVRCDLHNQDPA--VGRRFRSELEAKLEKWQEPDQAKIKRALPKPDEAPKSKRGGKR 380          
BLAST of mRNA_H-canaliculatus_F_contig11660.1469.1 vs. uniprot
Match: A0A7S4DKU2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKU2_HETAK)

HSP 1 Score: 286 bits (733), Expect = 7.230e-92
Identity = 149/256 (58.20%), Postives = 191/256 (74.61%), Query Frame = 1
Query:    1 QDIDPEMVEVHRFVVDSYSQKFPELDSLIPQPADYVRTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEQALQECLKGCEEYEALVAAKASILDFVETRMTSMAPNVCAMVGSRITARLLALTGGLTAMSKTPSCNLQVMGQEKKTLSGFSSKATVSHAGLLYQSEVIQLAPPYLRNKALRVTAAKVSLASRFDSYGNDPSGHVGRQWRAEVEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 768
            QDID E++ +HR+V D YS+KFPEL+SL+P   +Y++ VQ + NEMDMT+V+L   LP  +VM+VSVTGSTTSGQPL E  L ECL+G     AL AAKA +L FVE+RM  +APN+ A++GSR+ A L+AL GGL A+SK P CNLQVMGQEK+ L+GF + A + H G++Y SE++Q  P  LR KAL+VTAAK +LA+R DSY + PSG  G++ R E+EDKI+KWQE Q  KTKKA PKP+     KRGGKR
Sbjct:   63 QDIDDEIINIHRYVCDVYSKKFPELESLLPNKLEYMQVVQRIGNEMDMTEVELSDILPSASVMLVSVTGSTTSGQPLPEADLAECLEGARAALALDAAKAKVLGFVESRMALIAPNLVALLGSRLAAVLMALAGGLLALSKIPCCNLQVMGQEKRALAGFGNAAAMKHTGIIYYSELVQSCPVGLRQKALKVTAAKCALAARVDSYQSAPSGQKGQELRQEIEDKIQKWQEPQEGKTKKARPKPEGGRKSKRGGKR 318          
BLAST of mRNA_H-canaliculatus_F_contig11660.1469.1 vs. uniprot
Match: A0A7S2C7I0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C7I0_9STRA)

HSP 1 Score: 288 bits (736), Expect = 1.270e-91
Identity = 148/257 (57.59%), Postives = 191/257 (74.32%), Query Frame = 1
Query:    1 QDIDPEMVEVHRFVVDSYSQKFPELDSLIPQPADYVRTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEQALQECLKGCEEYEALVAAKASILDFVETRMTSMAPNVCAMVGSRITARLLALTGGLTAMSKTPSCNLQVMGQEKKTLS-GFSSKATVSHAGLLYQSEVIQLAPPYLRNKALRVTAAKVSLASRFDSYGNDPSGHVGRQWRAEVEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 768
            Q ID EMV VH++VVD+YS+KFPEL+SL+PQ  DY++ VQ + NEMDMT VDL   LP   V+ VS+TGSTTSGQPLSE  L +C++GC E   L   K   L FVE+RM  +APNVCA++ + I A+L+ L GGL  MSK PSCNLQ++GQ+K+ L  GF+S A + H GL+Y S  +Q APPYLR +AL++ AAKV+LA+R D +  +PS  +GR+ R EV+DKI+KWQE   AKTKK+LP PD+ PA+KRGGKR
Sbjct:  117 QKIDDEMVNVHKYVVDTYSKKFPELESLVPQRLDYMQVVQTIGNEMDMTMVDLSDILPNAVVISVSMTGSTTSGQPLSESDLSQCMQGCREAVELEEDKMKSLTFVESRMNMVAPNVCALIDTIIAAQLMGLAGGLVMMSKIPSCNLQILGQQKQVLGHGFASVAAMPHTGLIYYSTAVQRAPPYLRMRALKLVAAKVALAARMDLHQKEPSDALGRKLREEVDDKIDKWQEPPKAKTKKSLPAPDNRPAKKRGGKR 373          
BLAST of mRNA_H-canaliculatus_F_contig11660.1469.1 vs. uniprot
Match: A0A7S1U3H0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3H0_9STRA)

HSP 1 Score: 275 bits (704), Expect = 1.720e-86
Identity = 142/255 (55.69%), Postives = 186/255 (72.94%), Query Frame = 1
Query:    7 IDPEMVEVHRFVVDSYSQKFPELDSLIPQPADYVRTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEQALQECLKGCEEYEALVAAKASILDFVETRMTSMAPNVCAMVGSRITARLLALTGGLTAMSKTPSCNLQVMGQEKK-TLSGFSSKATVSHAGLLYQSEVIQLAPPYLRNKALRVTAAKVSLASRFDSYGNDPSGHVGRQWRAEVEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 768
            I+ E  +V RFV D Y+ KFPEL+SL+  P D+ +TV  + NEMD+T VDL   LP  TVMVVSVTGSTT+G  L  + L ECLKGCEE   L A + ++L FVE RM  +APNVCA++G+++ ARLLA+ GGL AMS+ PSCNLQV+GQ+K  TL+GFS+ A   H G++  S++ Q APPYLR KAL+VTAAKV LA+R D++G D SG +G ++R ++E+KIEKWQE       KALPKPD +  ++RGG+R
Sbjct:  134 IEEETAKVFRFVADQYAVKFPELESLVSNPLDFAKTVSAIGNEMDLTNVDLNDILPSATVMVVSVTGSTTAGVALRPEVLAECLKGCEEVNGLDADRRTLLSFVEGRMMGLAPNVCALIGAQVAARLLAIAGGLNAMSRVPSCNLQVLGQDKAHTLAGFSNTAIDRHMGIIGYSDLCQSAPPYLRMKALKVTAAKVVLAARTDAFGGDKSGDLGLKFRQDIEEKIEKWQEPTQGSRTKALPKPDPVTKKRRGGRR 388          
BLAST of mRNA_H-canaliculatus_F_contig11660.1469.1 vs. uniprot
Match: A0A7S2SGQ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGQ5_9STRA)

HSP 1 Score: 275 bits (702), Expect = 5.070e-86
Identity = 142/257 (55.25%), Postives = 188/257 (73.15%), Query Frame = 1
Query:    1 QDIDPEMVEVHRFVVDSYSQKFPELDSLIPQPADYVRTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEQALQECLKGCEEYEALVAAKASILDFVETRMTSMAPNVCAMVGSRITARLLALTGGLTAMSKTPSCNLQVMGQEKK-TLSGFSSKATVSHAGLLYQSEVIQLAPPYLRNKALRVTAAKVSLASRFDSYGNDPSGHVGRQWRAEVEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 768
            Q ID E++ V++FV D Y  KFPEL+SL+P   DYVR VQ + NEMDMT VDL + LP   V+ VS+TGSTTSGQPL E+ L +C  GC+E   L  AK  IL FVE+RM+ +APN+CA++ + I A+L+ L GGL+AMSK P+CNLQV+GQ K   L GF + A + H GL+Y +  +Q APPYLR +AL++ AAKV+LA+R D + ++PSG  G + R E++DK+ KWQE Q A+TKKALP PD+ P++KRGGKR
Sbjct:  158 QKIDDEILTVYKFVADLYGTKFPELESLVPNRLDYVRVVQAIGNEMDMTMVDLSAILPNALVISVSMTGSTTSGQPLPEKDLLQCNSGCQEALDLEDAKRKILHFVESRMSMVAPNICAVLDTVIAAQLMGLAGGLSAMSKIPACNLQVLGQNKLGNLGGFGAAAALPHTGLIYFTTAVQQAPPYLRMRALKLVAAKVALAARIDLHQSEPSGTAGAKLRVEIDDKVTKWQETQQARTKKALPIPDEKPSKKRGGKR 414          
BLAST of mRNA_H-canaliculatus_F_contig11660.1469.1 vs. uniprot
Match: K3W6W3_GLOUD (Nop domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6W3_GLOUD)

HSP 1 Score: 267 bits (682), Expect = 6.940e-85
Identity = 139/256 (54.30%), Postives = 185/256 (72.27%), Query Frame = 1
Query:    7 IDPEMVEVHRFVVDSYSQKFPELDSLIPQPADYVRTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEQALQECLKGCEEYEALVAAKASILDFVETRMTSMAPNVCAMVGSRITARLLALTGGLTAMSKTPSCNLQVMGQEKKTLSGFSSKATVSHAGLLYQSEVIQLAPPYLRNKALRVTAAKVSLASRFDS--YGNDPSGHVGRQWRAEVEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 768
            ID E++ +HRFV + Y++KFPELDSL+P   DYVR V+ + NEMDMT VDL   LP   ++ +SVTGS TSG+ LS + L+ C+  C+E  +L   K+ IL FVE+RM+ +APNV  +VG+RI A+L+ L GG+  +S+ PSCNLQV+GQ+KK LSGFSS A + H G+++ ++VIQ  PPYLR KA R  A K++L +R DS  + +D  G VG Q+R E+  K+EKWQE Q AKTKKALP PD+ P RKRGGKR
Sbjct:    4 IDDEIIAIHRFVAEIYAKKFPELDSLVPNALDYVRVVKAIGNEMDMTVVDLSKLLPSAAIIGISVTGSGTSGKQLSAEDLKTCMDACDELLSLDKDKSMILGFVESRMSYLAPNVSQLVGTRIAAQLIGLAGGVANLSRIPSCNLQVLGQQKKVLSGFSSAAALKHTGIIFYADVIQNVPPYLRMKACRALAGKIALMARVDSQPHQSDREGKVGAQFRDELIAKMEKWQEPQKAKTKKALPIPDEKPRRKRGGKR 259          
BLAST of mRNA_H-canaliculatus_F_contig11660.1469.1 vs. uniprot
Match: F0WMW8_9STRA (U4/U6 small nuclear ribonucleoprotein Prp31 putativ n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMW8_9STRA)

HSP 1 Score: 268 bits (686), Expect = 4.530e-84
Identity = 141/256 (55.08%), Postives = 181/256 (70.70%), Query Frame = 1
Query:    7 IDPEMVEVHRFVVDSYSQKFPELDSLIPQPADYVRTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEQALQECLKGCEEYEALVAAKASILDFVETRMTSMAPNVCAMVGSRITARLLALTGGLTAMSKTPSCNLQVMGQEKKTLSGFSSKATVSHAGLLYQSEVIQLAPPYLRNKALRVTAAKVSLASRFDSYGN--DPSGHVGRQWRAEVEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 768
            ID E+  +HRF+V+ Y+ KFPELDSL+P   DY R V+ + NE DMT VDL S LP  TVM VSVTGSTTSG+PLS   L+ C++GC E   L   K  IL+FVE+RM  +APNV  +VG+RI A+L+ L GG+  +S+ PSCNLQV+GQ+KK LSGFSS A + H G+++  ++IQ  PPYLR KA R  A K++L +R DS  N  DP G VG ++  ++  K+EKWQE   AK+KKALP PD+ P RKRGGKR
Sbjct:  120 IDDEIAAIHRFLVEMYAPKFPELDSLVPNALDYARVVERIGNETDMTLVDLASLLPSATVMSVSVTGSTTSGKPLSPDTLEICIEGCRELFDLEKDKVMILEFVESRMRFLAPNVAQLVGTRIAAQLVGLAGGILELSRIPSCNLQVLGQQKKVLSGFSSAAALRHTGIIFHCDLIQNVPPYLRIKACRALAGKLALCARVDSEQNASDPDGQVGARFHQDLVMKMEKWQEPHKAKSKKALPVPDEKPRRKRGGKR 375          
BLAST of mRNA_H-canaliculatus_F_contig11660.1469.1 vs. uniprot
Match: A0A024GER9_9STRA (Nop domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GER9_9STRA)

HSP 1 Score: 264 bits (675), Expect = 2.180e-82
Identity = 139/256 (54.30%), Postives = 180/256 (70.31%), Query Frame = 1
Query:    7 IDPEMVEVHRFVVDSYSQKFPELDSLIPQPADYVRTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEQALQECLKGCEEYEALVAAKASILDFVETRMTSMAPNVCAMVGSRITARLLALTGGLTAMSKTPSCNLQVMGQEKKTLSGFSSKATVSHAGLLYQSEVIQLAPPYLRNKALRVTAAKVSLASRFDSYGN--DPSGHVGRQWRAEVEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 768
            ID E+  +HRF+++ Y+ KFPEL+SL+P   DY R V+ + NE DMT VDL S LP  TVM VSVTGSTTSG+PL   AL+ C++ C+E   L   K  IL+FVE+RM  +APNV  +VG+RI A+L+ L GG+  +++ PSCNLQV+GQ+KK LSGFSS A + H G+++  ++IQ  PPYLR KA R  A K +L +R DS  N  DP G VG Q R ++  K+EKWQE   AK+KKALP PD+ P RKRGGKR
Sbjct:  123 IDDEIAAIHRFLIEMYAPKFPELESLVPNALDYARVVERIGNETDMTLVDLASLLPSATVMSVSVTGSTTSGKPLPPDALEICMEACKELFDLEKDKIMILEFVESRMRFLAPNVAQLVGTRIAAQLIGLAGGVLELARIPSCNLQVLGQQKKVLSGFSSAAALKHTGIIFHCDLIQNVPPYLRIKACRALAGKTALCARVDSDQNASDPDGQVGAQLRQDLIIKMEKWQEPHKAKSKKALPVPDEKPRRKRGGKR 378          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11660.1469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8Q2_9PHAE9.080e-16092.28Nop domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2XZL3_9STRA8.090e-10061.18Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CKH5_9STRA9.080e-9457.81Nop domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S4DKU2_HETAK7.230e-9258.20Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2C7I0_9STRA1.270e-9157.59Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1U3H0_9STRA1.720e-8655.69Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2SGQ5_9STRA5.070e-8655.25Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K3W6W3_GLOUD6.940e-8554.30Nop domain-containing protein n=1 Tax=Globisporang... [more]
F0WMW8_9STRA4.530e-8455.08U4/U6 small nuclear ribonucleoprotein Prp31 putati... [more]
A0A024GER9_9STRA2.180e-8254.30Nop domain-containing protein n=1 Tax=Albugo candi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11660contigH-canaliculatus_F_contig11660:274..3434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score460.3
Seed ortholog evalue5.8e-127
Seed eggNOG ortholog2880.D8LKU3
Preferred namePRPF31
KEGG koko:K12844
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0001654,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005687,GO:0005690,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006325,GO:0006342,GO:0006346,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016569,GO:0016604,GO:0016607,GO:0017069,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030621,GO:0030622,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034708,GO:0035097,GO:0040029,GO:0043010,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0044877,GO:0045292,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046540,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051716,GO:0060041,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070417,GO:0070990,GO:0071005,GO:0071011,GO:0071166,GO:0071339,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.spliceosomal tri-snRNP complex assembly
EggNOG OGsCOG1498@1,KOG2574@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons5
Model size771
Cds size753
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11660.1469.1prot_H-canaliculatus_F_contig11660.1469.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11660 274..3416 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928858.216123-CDS-H-canaliculatus_F_contig11660:273..4561622928858.216123-CDS-H-canaliculatus_F_contig11660:273..456Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11660 274..456 -
1696845591.535063-CDS-H-canaliculatus_F_contig11660:273..4561696845591.535063-CDS-H-canaliculatus_F_contig11660:273..456Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11660 274..456 -
1622928858.228762-CDS-H-canaliculatus_F_contig11660:679..8231622928858.228762-CDS-H-canaliculatus_F_contig11660:679..823Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11660 680..823 -
1696845591.5488424-CDS-H-canaliculatus_F_contig11660:679..8231696845591.5488424-CDS-H-canaliculatus_F_contig11660:679..823Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11660 680..823 -
1622928858.2441814-CDS-H-canaliculatus_F_contig11660:1449..16321622928858.2441814-CDS-H-canaliculatus_F_contig11660:1449..1632Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11660 1450..1632 -
1696845591.5617585-CDS-H-canaliculatus_F_contig11660:1449..16321696845591.5617585-CDS-H-canaliculatus_F_contig11660:1449..1632Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11660 1450..1632 -
1622928858.2555966-CDS-H-canaliculatus_F_contig11660:1976..20991622928858.2555966-CDS-H-canaliculatus_F_contig11660:1976..2099Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11660 1977..2099 -
1696845591.5774982-CDS-H-canaliculatus_F_contig11660:1976..20991696845591.5774982-CDS-H-canaliculatus_F_contig11660:1976..2099Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11660 1977..2099 -
1622928858.2674456-CDS-H-canaliculatus_F_contig11660:3296..34161622928858.2674456-CDS-H-canaliculatus_F_contig11660:3296..3416Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11660 3297..3416 -
1696845591.588639-CDS-H-canaliculatus_F_contig11660:3296..34161696845591.588639-CDS-H-canaliculatus_F_contig11660:3296..3416Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11660 3297..3416 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928858.2801604-UTR-H-canaliculatus_F_contig11660:3416..34341622928858.2801604-UTR-H-canaliculatus_F_contig11660:3416..3434Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11660 3417..3434 -
1696845591.5989785-UTR-H-canaliculatus_F_contig11660:3416..34341696845591.5989785-UTR-H-canaliculatus_F_contig11660:3416..3434Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11660 3417..3434 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11660.1469.1

>prot_H-canaliculatus_F_contig11660.1469.1 ID=prot_H-canaliculatus_F_contig11660.1469.1|Name=mRNA_H-canaliculatus_F_contig11660.1469.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=251bp
MVEVHRFVVDSYSQKFPELDSLIPQPADYVRTVQVMRNEMDMTQVDLESA
LPQTTVMVVSVTGSTTSGQPLSEQALQECLKGCEEYEALVAAKASILDFV
ETRMTSMAPNVCAMVGSRITARLLALTGGLTAMSKTPSCNLQVMGQEKKT
LSGFSSKATVSHAGLLYQSEVIQLAPPYLRNKALRVTAAKVSLASRFDSY
GNDPSGHVGRQWRAEVEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR
*
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mRNA from alignment at H-canaliculatus_F_contig11660:274..3434-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11660.1469.1 ID=mRNA_H-canaliculatus_F_contig11660.1469.1|Name=mRNA_H-canaliculatus_F_contig11660.1469.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3161bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11660:274..3434- (Hapterophycus canaliculatus Oshoro5f female)
CAGGATATCGACCCGGAGATGGTGGAGGTGCACCGGTTCGTGGTGGACAG CTACTCGCAGAAGTTTCCGGAGCTTGATAGCCTCATTCCACAACCGGCGG ATTACGTCCGAACGGTGCAGGTCATGCGGAACGAGATGGTGAGAAGTATG AAGCATCGGGACAACTTGTTTTTTTGCCCTCCCGAGATGCTTTGCCGTCT AGTAAGCGTTTTTTTCCCCATCGTTGAGTGCTCTGTCGTATCCTCCTGAA CACATCCCCCTGAAGATGGAACACCGTTGTTTCGCCCCGGGTTTTCGAAG CTAGAAGGCTTCTCCCTTTCCGGCAGGCGACCGTGCAGAAGACAAGAAGG GACAACGAACAAATGTTTCGCTCTCCGTCTCGTAGATTGCCGGCGGAGAT TTTGATGTTTTCGTCTCGTCTCCTTTTTTCTCGTGTGGTCCTTGGGCCGC CCCTGATGCGATGGCCATGTCGAGAGAGAGACAGACAGACAGACAGAGAG AGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGACACACAGAGAGAGAGGG AGAGGCAGAGAGAGAGAGAGAGGGAGGCTGCAATTTGACGGACGTGCCGT ATCGCTTCTTCACGACGCTGCCATGCGCGTTGCGAGTTGCGAGTAGATCG CGTACCCCGAGTAGTGTGCGTGCGTGTACCCCGGGAAGCGTGGGTTGTGG GGCCGGGTGATGTGTTCCATTGATATGCGCCGAGGGGAGTTGGCGTTTCT GCGGCACTGATCCTTCGCATTGTCCCTCTCGTTCGAGGTACCAAGATTGC GCCGACCGCATCGTGTTCCAAACGTTGGGTGGAGCGTCAAAACCATGTTG AAATCCTCTCAGCGCAGCAGGGTGGGGGAAGTGACGGAACCGCTCCCTCT TTGCACGTTCTTGGTTGTAGGTGCATGTGCGCGCTCGCGGGCGCCGGGTC GGCTTGTCGAGCCCATCTCGCCTCACTCTTTCGCCATAAGCGCCTCGTGT TGTTCCTTCCTTGCCTAAACTTGTAGAGTTGCTGATTCCACCTGCACCTC TCATGGTCCACTCGTGCGCGCACGTGCCGACTCGTGCTTTCGATGCCACG TCACCCCCCCCCCCCTCTCTCTGTCTCTCTCGGCGTTCCTGTCCCTGCAC CCCCTTACGCGCATCTCCTTCCCTCTCTGTCTGTCTCGTCCGGAAATCTC TCCGTCTTGCCTCTCCCTCCCGCTGCCCCCCGCGTGCGCTCCTGCATCCG TGCGTCGCCTCTCACCCCTACCCCCGGCGGCGTTCGTATCCACGGGCCTG ACTGCGCGTGATTGGACGATGGATCGAGCAATCAGGACATGACCCAAGTC GACCTGGAGTCCGCTTTGCCGCAGACTACCGTGATGGTCGTGAGCGTGAC TGGCTCCACCACCAGCGGGCAACCGCTGTCGGAGCAGGCCCTGCAGGAGT GCTTGAAGGTACGCTTGGTTCGGCTCCGCGGACCATCAGCTCTTTTGGCC TCCCGGTGTGGGCGTACAGTTTGTGGTGTGCCGAAAAGTGGGGGACCGTG TAGCACTTGGCGTGTACGAGGTGTGATGGTTTGATGGTCGTTCATCACAT CATACCGTTCTTTTTGCTCGGGCACATGTGCGGTAGTGTCAAAGTGCGTG ATATTGTGCTTGGATCCGGGGCATGTGTCTGGAAACGTTGACGGCGGTGA CGACGACGATGATGGCGATGACGATAGCAAAATCTATCACAACCAAGATA ATAGCAAACACAGACAAAATTCAACAATACTAAGCAAAAACCTGCCCGAC AGGGTTGCGAGGAGTACGAGGCATTGGTGGCGGCGAAGGCTTCCATCCTG GACTTCGTGGAGACGAGGATGACCAGCATGGCCCCGAACGTGTGTGCTAT GGTCGGCAGCAGGATCACAGCGAGATTGCTGGCGCTGACTGGGGGGCTCA CAGCGATGTCCAAGACTCCGTCCTGCAACCTGCAAGTGGGTCTTTTTACG TGTGTGCCTGTATGTGTCTGTGCTGCCTAGTGCATGCATGGTTGATGCGT GCGTCGATGCACCGTGCCTCTCCCGCACCTCCTCTTGCTTCTTCCTTTCG CCCTATATCGTGCTTTGAGCTTGTGCTTTGGACTCCGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTCGGTGAAGCTTTCGCCTTTTCCTCCCCTCCTTTC CTCTCTTGTGTTCAACGTTTATGCCCTGGGACAGATACACCAACCCGCCA ACCCGTCTCTCCGAGTCCACGAGATACCACAAAATTTATCAACACCAAAT TAAGATGAAAAACTGCTTCAACCGAGGCCAAGGGCAGGCGGGGTTCGATG GAGGTCAAAAGCTACCCAGGTCGAGTCAATCGATCTAAAGGAAAGCGAAG CCACGCGAGGCAACCGTCTAAAAATTTCCCAGAAGCGCTCTTTACTCGAC TCAACCCATTTCGCTTTCTCATTCATTTGCTCACCAGCAACCACACCGCT GTCACACTGCGACTGGAAGACCGCCCAAGCGCCTCGAGTTTCCTCGCCCA TCCCCTCAAGCCGCCTCACGGAATACCACAATACCCTTCTTTGACGAACT CACGGTTTCAGGTCATGGGCCAGGAGAAGAAGACCCTCAGCGGCTTCTCC TCGAAGGCGACCGTGTCCCACGCCGGCCTGCTGTACCAGTCCGAGGTCAT TCAGCTCGCGCCCCCGTACCTTCGAAACAAGGCTCTCAGGGTCACTGCCG CCAAGGTAGGGGAAACAGGGGGGTCTCTGCGTCCGTTTAGGTTCTTGGTG CTGGCGGTAGCCGTGAGTTTGGAGACGGGGCGGGGCGGGGGGGGATAGGC GGGAAGGATGGGGCGGCTTACCGATCCATCTGCCCGCCAAAGATGCATGC TTGGCAGAAAAATAAGCGGAGAAAAAGCGACTCTTCCAAAGCGCTCCAAA AGACAAAACATCGTGGCGCGTGTTCCAGGTGAGCCTTGCCTCGAGGTTCG ACAGCTACGGCAACGACCCCTCCGGCCACGTGGGGCGTCAGTGGAGGGCC GAGGTGGAAGACAAGATCGAGAAGTGGCAGGAGCTGCAGACGGCCAAGAC CAAGAAGGCCTTGCCCAAGCCGGACGACATGCCTGCCAGAAAACGCGGAG GGAAAAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11660:274..3434-

>mRNA_H-canaliculatus_F_contig11660.1469.1 ID=mRNA_H-canaliculatus_F_contig11660.1469.1|Name=mRNA_H-canaliculatus_F_contig11660.1469.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1506bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11660:274..3434- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGGAGGTGCACCGGTTCGTGGTGGACAGCTACTCGCAGAAGTTTCC
GGAGCTTGATAGCCTCATTCCACAACCGGCGGATTACGTCCGAACGGTGC
AGGTCATGCGGAACGAGATGATGGTGGAGGTGCACCGGTTCGTGGTGGAC
AGCTACTCGCAGAAGTTTCCGGAGCTTGATAGCCTCATTCCACAACCGGC
GGATTACGTCCGAACGGTGCAGGTCATGCGGAACGAGATGGACATGACCC
AAGTCGACCTGGAGTCCGCTTTGCCGCAGACTACCGTGATGGTCGTGAGC
GTGACTGGCTCCACCACCAGCGGGCAACCGCTGTCGGAGCAGGCCCTGCA
GGAGTGCTTGAAGGACATGACCCAAGTCGACCTGGAGTCCGCTTTGCCGC
AGACTACCGTGATGGTCGTGAGCGTGACTGGCTCCACCACCAGCGGGCAA
CCGCTGTCGGAGCAGGCCCTGCAGGAGTGCTTGAAGGGTTGCGAGGAGTA
CGAGGCATTGGTGGCGGCGAAGGCTTCCATCCTGGACTTCGTGGAGACGA
GGATGACCAGCATGGCCCCGAACGTGTGTGCTATGGTCGGCAGCAGGATC
ACAGCGAGATTGCTGGCGCTGACTGGGGGGCTCACAGCGATGTCCAAGAC
TCCGTCCTGCAACCTGCAAGGTTGCGAGGAGTACGAGGCATTGGTGGCGG
CGAAGGCTTCCATCCTGGACTTCGTGGAGACGAGGATGACCAGCATGGCC
CCGAACGTGTGTGCTATGGTCGGCAGCAGGATCACAGCGAGATTGCTGGC
GCTGACTGGGGGGCTCACAGCGATGTCCAAGACTCCGTCCTGCAACCTGC
AAGTCATGGGCCAGGAGAAGAAGACCCTCAGCGGCTTCTCCTCGAAGGCG
ACCGTGTCCCACGCCGGCCTGCTGTACCAGTCCGAGGTCATTCAGCTCGC
GCCCCCGTACCTTCGAAACAAGGCTCTCAGGGTCACTGCCGCCAAGGTCA
TGGGCCAGGAGAAGAAGACCCTCAGCGGCTTCTCCTCGAAGGCGACCGTG
TCCCACGCCGGCCTGCTGTACCAGTCCGAGGTCATTCAGCTCGCGCCCCC
GTACCTTCGAAACAAGGCTCTCAGGGTCACTGCCGCCAAGGTGAGCCTTG
CCTCGAGGTTCGACAGCTACGGCAACGACCCCTCCGGCCACGTGGGGCGT
CAGTGGAGGGCCGAGGTGGAAGACAAGATCGAGAAGTGGCAGGAGCTGCA
GACGGCCAAGACCAAGAAGGCCTTGCCCAAGCCGGACGACATGCCTGCCA
GAAAACGCGGAGGGAAAAGGTGAGTGAGCCTTGCCTCGAGGTTCGACAGC
TACGGCAACGACCCCTCCGGCCACGTGGGGCGTCAGTGGAGGGCCGAGGT
GGAAGACAAGATCGAGAAGTGGCAGGAGCTGCAGACGGCCAAGACCAAGA
AGGCCTTGCCCAAGCCGGACGACATGCCTGCCAGAAAACGCGGAGGGAAA
AGGTGA
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