mRNA_H-canaliculatus_F_contig11589.1401.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11589.1401.1
Unique NamemRNA_H-canaliculatus_F_contig11589.1401.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11589.1401.1 vs. uniprot
Match: D7FWU7_ECTSI (EF-hand, calcium binding motif n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU7_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 3.000e-85
Identity = 168/197 (85.28%), Postives = 176/197 (89.34%), Query Frame = 1 
Query:    1 VIDFQDFREAVKKLSLGLTEPEILSFFRSFDADGSGGIDFSEFCEWMETINDA----GGDXXXXXXXXXXXXXXXXXXXXXXXXXFRPSSGGSDKSISKRKMRDAQAKVKAASEKVPERTMAENEQLLRQKILGSIGGGPFELLRAFRKMHRGRGTVVDIDDFREAVKTFSLGLGEQEVVAFFKGFDADGSGGIDFE 579
            VIDF+ FRE VKKLSLGLTEPEIL FFRSFDADGSGGIDFSEFCEWME  +D+    G  XXXXXXXXXXXXXXXXX        FRPSSGGSDKS+SKRKMRDAQAKVKAASE+VPERTMAENEQLLRQKILGSIGGGPF+LLRAFRKMHRGRGTVVD++DFREAVKTFSLGLGE EV AFFKGFDADGSGGIDFE
Sbjct:  139 VIDFKGFREGVKKLSLGLTEPEILDFFRSFDADGSGGIDFSEFCEWMEATDDSADEPGXXXXXXXXXXXXXXXXXXXTSKGREGGFRPSSGGSDKSVSKRKMRDAQAKVKAASERVPERTMAENEQLLRQKILGSIGGGPFQLLRAFRKMHRGRGTVVDLNDFREAVKTFSLGLGEPEVEAFFKGFDADGSGGIDFE 335
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BLAST of mRNA_H-canaliculatus_F_contig11589.1401.1 vs. uniprot
Match: A0A6H5KCV0_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.590e-14
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 VIDFQDFREAVKKLSLGLTEPEILSFFRSFDADGSGGIDFSE 126
            VIDF+ FRE VKKL+LGLTEPEIL FFRSFDADGSGGIDFSE
Sbjct:    2 VIDFKGFREGVKKLNLGLTEPEILDFFRSFDADGSGGIDFSE 43
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BLAST of mRNA_H-canaliculatus_F_contig11589.1401.1 vs. uniprot
Match: A0A078AAI2_STYLE (Ef hand family protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AAI2_STYLE)

HSP 1 Score: 57.0 bits (136), Expect = 4.170e-5
Identity = 43/192 (22.40%), Postives = 85/192 (44.27%), Query Frame = 1 
Query:    4 IDFQDFREAVKKLSLGLTEPEILSFFRSFDADGSGGIDFSEFCEWMETINDAGGDXXXXXXXXXXXXXXXXXXXXXXXXXFRPSSGGSDKSISKRKMRDAQAKVKAASEKVPERTMAENEQLLRQKILGSIGGGPFELLRAFRKMHRGRGTVVDIDDFREAVKTFSLGLGEQEVVAFFKGFDADGSGGIDFE 579
            +DF  F+ A+ K+ + + E ++  FFR++D++G+G +D+ EF + +     A G                             +S G  ++ + R +RD +  ++A  +K+ +R              G IG     L R F+ M       +D  +F++AV+ F + + ++ +   F  FD +  G ID++
Sbjct:   57 VDFPTFQRAIAKMGVVVDEEDLEVFFRAYDSNGNGKLDYKEFSDIVFNRAQASGSGN--------------------------ASQGRQQASTYRGLRDPKPYIEAIRDKIKQRGAR-----------GIIG-----LQRVFKIMDDNNSKSLDKQEFKKAVRDFKIDIPDEYIDIIFAAFDLNRDGTIDYD 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11589.1401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FWU7_ECTSI3.000e-8585.28EF-hand, calcium binding motif n=1 Tax=Ectocarpus ... [more]
A0A6H5KCV0_9PHAE2.590e-1488.10EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A078AAI2_STYLE4.170e-522.40Ef hand family protein n=1 Tax=Stylonychia lemnae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11589contigH-canaliculatus_F_contig11589:1202..4142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.8
Seed ortholog evalue6.9e-51
Seed eggNOG ortholog2880.D7FWU7
EggNOG free text desc.EF-hand domain pair
EggNOG OGs28PG7@1,2QW47@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size1137
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11589.1401.1prot_H-canaliculatus_F_contig11589.1401.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11589 1817..3596 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928849.8907785-UTR-H-canaliculatus_F_contig11589:1201..13271622928849.8907785-UTR-H-canaliculatus_F_contig11589:1201..1327Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11589 1202..1327 +
1696845588.115942-UTR-H-canaliculatus_F_contig11589:1201..13271696845588.115942-UTR-H-canaliculatus_F_contig11589:1201..1327Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11589 1202..1327 +
1622928849.9059339-UTR-H-canaliculatus_F_contig11589:1804..18161622928849.9059339-UTR-H-canaliculatus_F_contig11589:1804..1816Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11589 1805..1816 +
1696845588.128474-UTR-H-canaliculatus_F_contig11589:1804..18161696845588.128474-UTR-H-canaliculatus_F_contig11589:1804..1816Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11589 1805..1816 +
1622928849.9611442-UTR-H-canaliculatus_F_contig11589:3596..41421622928849.9611442-UTR-H-canaliculatus_F_contig11589:3596..4142Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11589 3597..4142 +
1696845588.163702-UTR-H-canaliculatus_F_contig11589:3596..41421696845588.163702-UTR-H-canaliculatus_F_contig11589:3596..4142Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11589 3597..4142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928849.9184613-CDS-H-canaliculatus_F_contig11589:1816..19841622928849.9184613-CDS-H-canaliculatus_F_contig11589:1816..1984Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11589 1817..1984 +
1696845588.1384652-CDS-H-canaliculatus_F_contig11589:1816..19841696845588.1384652-CDS-H-canaliculatus_F_contig11589:1816..1984Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11589 1817..1984 +
1622928849.9312713-CDS-H-canaliculatus_F_contig11589:3004..31541622928849.9312713-CDS-H-canaliculatus_F_contig11589:3004..3154Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11589 3005..3154 +
1696845588.1476433-CDS-H-canaliculatus_F_contig11589:3004..31541696845588.1476433-CDS-H-canaliculatus_F_contig11589:3004..3154Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11589 3005..3154 +
1622928849.945749-CDS-H-canaliculatus_F_contig11589:3461..35961622928849.945749-CDS-H-canaliculatus_F_contig11589:3461..3596Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11589 3462..3596 +
1696845588.1557984-CDS-H-canaliculatus_F_contig11589:3461..35961696845588.1557984-CDS-H-canaliculatus_F_contig11589:3461..3596Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11589 3462..3596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11589.1401.1

>prot_H-canaliculatus_F_contig11589.1401.1 ID=prot_H-canaliculatus_F_contig11589.1401.1|Name=mRNA_H-canaliculatus_F_contig11589.1401.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=151bp
METINDAGGDEDDSGGGDDDGDGGGARRRQGGGGGFRPSSGGSDKSISKR
KMRDAQAKVKAASEKVPERTMAENEQLLRQKILGSIGGGPFELLRAFRKM
HRGRGTVVDIDDFREAVKTFSLGLGEQEVVAFFKGFDADGSGGIDFEARA
*
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mRNA from alignment at H-canaliculatus_F_contig11589:1202..4142+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11589.1401.1 ID=mRNA_H-canaliculatus_F_contig11589.1401.1|Name=mRNA_H-canaliculatus_F_contig11589.1401.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2941bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11589:1202..4142+ (Hapterophycus canaliculatus Oshoro5f female)
GTGATCGACTTCCAGGATTTTCGGGAAGCGGTGAAGAAGCTCAGCCTGGG
CCTCACGGAGCCGGAGATCCTGAGCTTCTTCCGCTCGTTCGACGCGGACG
GTAGCGGGGGCATAGACTTCTCCGAGGTGAGCCGCCACCCAGAGGGGGCT
CCGTGCCATCACTAGGCAGCGGTAGCCTCCGTGTCTCCCTGACGAGGTTC
GGACGACCCGGTGGCCGGAGGGGTCGGGGTTCCCTGCTCCCTCTGCATCC
GGTTCTTGAGTGGCGGTCGCCCCATCCGAGTCGAGTGGGCCCGCCGCGGC
CGTTCCGCACGTCTGTGACACGACGGAAAAAAGCACGCTCTTTTCGAACC
AGGCGGCGGAATTGTGCGGTCATCTACACGCGGTGTGGGTGCGCTTGCCC
GTGCTTGCCTTCGCCAGCGCGACCCCGGCGGACACGTCGGTGGACCGCGG
CCAAGCACCGCCTTGCCGATGGGTCGCCGCGAAGCGAAGCCCCCTGCGTT
AAGAGCAGAGCAGGGCTGACGATCGCCGCCTGGCCGAATCCCCTCTTTGG
GACGCTCGCCGCCGTCTTACCCTCTTCATGTTTCCGCCCCCGGTTGCACC
AAGTTTTGCGAGTGGATGGAGACGATAAATGACGCCGGGGGCGATGAGGA
CGACAGCGGCGGCGGCGACGACGACGGCGACGGGGGGGGTGCGCGCAGGC
GGCAGGGCGGTGGCGGCGGATTTCGTCCGTCCAGCGGCGGCAGCGACAAG
AGCATCAGCAAGCGCAAGATGCGAGACGCCCAGGTGAGGAAGCAGAGTCG
CGCGCAATGGGGTGGGATACGCTGCTGCCCCGAGTCAAGCTGTGCCGTCC
ACACGACGACTAGCAGCCGATACGGTCAGTCGCCACGGCCTGGAGAACCT
CGACAGTTGTTCGGCGCATAGCTCTTACGGTTAGCCTTCGGGCTGATCAT
TCTCGCTTCAACAGCACGCGAAATACTGGTGCACATACATGTGTTTGTGT
AATTTATGTTTTACATAAAATGGGTTTTAGACGTGAGAGTTTTCGCCAGG
GGCCTCTCAAAGTGTTGCCCGCTACCGGGAGTCGCGCGGGTTTGAGTGGA
CGCGCGGAGCTGGACGGTGTCGCGCACGAGCGTACAGGGGTGATGGGTCA
ACGAAAGCTAAAGCCCAACGTAGCGGCACCGAGTGGATGGCATGCGAGAC
ACGCCGAACGAGTCCATCCCGCTTCGGGCTCGAACGCTGAATGTTGAAGG
CTGCGCGCATGTCGTAATGGCGAGTCGAAAGGAAAGCCAGATGCTTGGGT
AGTTTTACCCGGCATGCGCTAGGAAGTCAGCTCAACCTTTGGTCTTTTTC
TTCGGGCAGGACGGGACCGAGATGATTGTACGGCTACCACCTTGACTCCC
GCGAGCGGTGTGTCTGCTACCTTCCGTGCACTTACGTTCCACCTTGGACT
CGTATTTCCGTTTTCAAGCTCGGTTCGCACCCCCTCCCTCGTCCACCCCC
CCCTGTGCGGATACTGTGGTGCTGGGAGGGCGTCTGGGCGCGCCTGTTGG
CGAAGGAGGATGTCACGATGCAGCGAGGGGCGACGACAATACCGAAACGA
AATCGGCCGCCGCCGCCGCCACAAATAGCAGTAACAACAACAACAACAAC
AACAAGAACAACAACAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCACCGCGACCAACAAAAACACCAGCGACTGGGTAC
AAAAATAAAACAAACGTCTGACAGAAACGCCTTGATCGTACCCCCCGTCT
CAGGCGAAAGTGAAAGCGGCTTCCGAAAAGGTTCCCGAGCGTACCATGGC
CGAGAACGAACAGCTCCTCCGACAGAAGATTCTGGGAAGCATCGGCGGTG
GGCCCTTCGAGCTGCTTCGGGCGTTTCGGAAGATGCACCGAGGGCGGGGC
ACGGTGAGAAGTGGGCGGGGGGTTGGGGGGTCGGACGGTACGCATAGGCA
CGCTGCGGAAGCTGTCGGGCTTCGCCGCTACGCGCCAGGGTGCACGTGAG
CGGATCCGCCGCCCTCGTGCACCTCGTCCTCGTGCATCCTGCCCCAGGCA
GCGACTACTTCCGCACGGCCCACCAGCGGCGGCGGCGCTGCCGCCGCAAC
GGCCTTCCTGCCTGCCTTCCTGCCTGCCCGCCTAACGTTGCGCTCGGCCG
ACACCCCGCCGACGAGGACAAGCAACCACTGCTTCTTCGTGTGTGTGTGC
GAAATCGCAGGTGGTGGACATTGACGACTTCCGCGAGGCCGTGAAGACGT
TCAGCCTGGGTCTGGGCGAGCAGGAGGTGGTGGCGTTCTTCAAGGGCTTC
GACGCCGACGGGAGCGGCGGGATTGACTTCGAGGCGAGGGCGTAGCCGTA
GCGGCCGCTGCTGCCGCCGCTGCTGCGGGTGCAGATGCTCCTGTTGCTGT
TGCTGTCGATGACGCTGCCGCTGATGGAGCTGATATTCTTACCCACTCCG
CCGCTCATACACCACTACCACAAATCGAACCCCTTTCACGAACTACAGTA
GGCACCATACGAGGGCGCACTCTCAACAGCAGCTTGCACGCGAGCGCCGA
GTCGATCGATCCCGCGGGGTCGTCGCCCAACCGCTCGGCACTCTTGGCAC
TACTTCTCTTGCCGCTAGCTCGGCACGCCACCAGAGCGGCCCGCGCATCT
TTACCGCGAGGCGTTTTCCTGACGGTCGCCGATCGTTCCCCGTGCGCAGG
AGTTCTGCGCTTGGGTGGGCGGCAACGACGCAGCCGGCGGCGGAGAGGAA
TGCCTCCTCCCCGACAGCAAACCCGTCACGTTCGGCCGAGACTTTTTTTC
TGGCGGGGGGGGGTCCGGGGATAGCGGGGGGGACGGGGGGGGGGGAGGGG
ACGAAGAAGAGGCCAAGACCCCCGCGCAACAGGCGCAGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11589:1202..4142+

>mRNA_H-canaliculatus_F_contig11589.1401.1 ID=mRNA_H-canaliculatus_F_contig11589.1401.1|Name=mRNA_H-canaliculatus_F_contig11589.1401.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=906bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11589:1202..4142+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGACGATAAATGACGCCGGGGGCGATGAGGACGACAGCGGCGGCGG
CGACGACGACGGCGACGGGGGGGGTGCGCGCAGGCGGCAGGGCGGTGGCG
GCGGATTTCGTCCGTCCAGCGGCGGCAGCGACAAGAGCATCAGCAAGCGC
AAGATGCGAGACGCCCAGATGGAGACGATAAATGACGCCGGGGGCGATGA
GGACGACAGCGGCGGCGGCGACGACGACGGCGACGGGGGGGGTGCGCGCA
GGCGGCAGGGCGGTGGCGGCGGATTTCGTCCGTCCAGCGGCGGCAGCGAC
AAGAGCATCAGCAAGCGCAAGATGCGAGACGCCCAGGCGAAAGTGAAAGC
GGCTTCCGAAAAGGTTCCCGAGCGTACCATGGCCGAGAACGAACAGCTCC
TCCGACAGAAGATTCTGGGAAGCATCGGCGGTGGGCCCTTCGAGCTGCTT
CGGGCGTTTCGGAAGATGCACCGAGGGCGGGGCACGGCGAAAGTGAAAGC
GGCTTCCGAAAAGGTTCCCGAGCGTACCATGGCCGAGAACGAACAGCTCC
TCCGACAGAAGATTCTGGGAAGCATCGGCGGTGGGCCCTTCGAGCTGCTT
CGGGCGTTTCGGAAGATGCACCGAGGGCGGGGCACGGTGGTGGACATTGA
CGACTTCCGCGAGGCCGTGAAGACGTTCAGCCTGGGTCTGGGCGAGCAGG
AGGTGGTGGCGTTCTTCAAGGGCTTCGACGCCGACGGGAGCGGCGGGATT
GACTTCGAGGCGAGGGCGTAGGTGGTGGACATTGACGACTTCCGCGAGGC
CGTGAAGACGTTCAGCCTGGGTCTGGGCGAGCAGGAGGTGGTGGCGTTCT
TCAAGGGCTTCGACGCCGACGGGAGCGGCGGGATTGACTTCGAGGCGAGG
GCGTAG
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