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Homology
BLAST of mRNA_H-canaliculatus_F_contig10.14.1 vs. uniprot
Match: A0A6H5K718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K718_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 1.260e-12 Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 2 Query: 209 HRRKANAVLLEQAGGNPKEAGLHSLRIGAASTLVVGGGIPKRVIQREGRWKGG 367
+ + +A ++E+AGGNPK+ GLHSLRIGAA+TL GG +P R+IQ EGRWK G
Sbjct: 211 YSKALSAQIVEKAGGNPKQVGLHSLRIGAATTLAAGGDVPDRIIQGEGRWKEG 263
BLAST of mRNA_H-canaliculatus_F_contig10.14.1 vs. uniprot
Match: A0A6H5JL16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL16_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 3.970e-12 Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 2 Query: 233 LLEQAGGNPKEAGLHSLRIGAASTLVVGGGIPKRVIQREGRWKGG 367
++E+AGG+PK+ GLHSLRIGA +TL GG +P R QREGRWK G
Sbjct: 39 IVEEAGGDPKQVGLHSLRIGATTTLAAGGDVPDRTTQREGRWKEG 83
BLAST of mRNA_H-canaliculatus_F_contig10.14.1 vs. uniprot
Match: A0A6H5KTP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP7_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 2.800e-10 Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = 2 Query: 233 LLEQAGGNPKEAGLHSLRIGAASTLVVGGGIPKRVIQREGRWK 361
++++AGG+PK+ GLHSLRIGAA+TL GG +P R+IQ EGRWK
Sbjct: 838 IVDKAGGDPKQVGLHSLRIGAATTLAAGGDVPDRIIQSEGRWK 880
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-00_003870.1 |
| Exons | 1 |
| Model size | 406 |
| Cds size | 375 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928625.375483-UTR-H-canaliculatus_F_contig10:18816..18847 | 1622928625.375483-UTR-H-canaliculatus_F_contig10:18816..18847 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10 18817..18847 + |
| 1696845498.7987306-UTR-H-canaliculatus_F_contig10:18816..18847 | 1696845498.7987306-UTR-H-canaliculatus_F_contig10:18816..18847 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10 18817..18847 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928625.3914878-CDS-H-canaliculatus_F_contig10:18847..19222 | 1622928625.3914878-CDS-H-canaliculatus_F_contig10:18847..19222 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10 18848..19222 + |
| 1696845498.8311677-CDS-H-canaliculatus_F_contig10:18847..19222 | 1696845498.8311677-CDS-H-canaliculatus_F_contig10:18847..19222 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10 18848..19222 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10.14.1 >prot_H-canaliculatus_F_contig10.14.1 ID=prot_H-canaliculatus_F_contig10.14.1|Name=mRNA_H-canaliculatus_F_contig10.14.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp
MGSPSLFGSHVHNVLNVTGMQGRRQQSAVVRPCASSALCHLISGPVYTFA
VYVAPSGATHRRKANAVLLEQAGGNPKEAGLHSLRIGAASTLVVGGGIPK
RVIQREGRWKGGCLFIFFLHHLLM* back to topmRNA from alignment at H-canaliculatus_F_contig10:18817..19222+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10.14.1 ID=mRNA_H-canaliculatus_F_contig10.14.1|Name=mRNA_H-canaliculatus_F_contig10.14.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=406bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:18817..19222+ (Hapterophycus canaliculatus Oshoro5f female)
GTATGGAGGAGCTCATATCGGTAGAAGAACCATGGGTTCGCCTTCTCTGT
TTGGTTCCCACGTCCACAACGTGTTAAATGTCACTGGGATGCAAGGTCGA
CGACAGCAGTCGGCTGTTGTTCGACCTTGCGCGTCGTCTGCCTTGTGTCA
CCTCATTAGTGGGCCGGTCTACACCTTTGCGGTTTATGTTGCCCCATCCG
GGGCCACACACAGGAGAAAGGCCAACGCTGTATTGTTGGAACAAGCGGGA
GGAAACCCGAAGGAAGCGGGCCTGCACTCATTGCGAATCGGTGCCGCCAG
CACATTGGTAGTCGGAGGAGGGATACCAAAGAGGGTTATTCAGAGAGAAG
GTAGATGGAAGGGGGGTTGCTTGTTTATTTTCTTTCTGCACCATCTTTTG
ATGTGA back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10:18817..19222+ >mRNA_H-canaliculatus_F_contig10.14.1 ID=mRNA_H-canaliculatus_F_contig10.14.1|Name=mRNA_H-canaliculatus_F_contig10.14.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:18817..19222+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTTCGCCTTCTCTGTTTGGTTCCCACGTCCACAACGTGTTAAATGT
CACTGGGATGCAAGGTCGACGACAGCAGTCGGCTGTTGTTCGACCTTGCG
CGTCGTCTGCCTTGTGTCACCTCATTAGTGGGCCGGTCTACACCTTTGCG
GTTTATGTTGCCCCATCCGGGGCCACACACAGGAGAAAGGCCAACGCTGT
ATTGTTGGAACAAGCGGGAGGAAACCCGAAGGAAGCGGGCCTGCACTCAT
TGCGAATCGGTGCCGCCAGCACATTGGTAGTCGGAGGAGGGATACCAAAG
AGGGTTATTCAGAGAGAAGGTAGATGGAAGGGGGGTTGCTTGTTTATTTT
CTTTCTGCACCATCTTTTGATGTGAATGGGTTCGCCTTCTCTGTTTGGTT
CCCACGTCCACAACGTGTTAAATGTCACTGGGATGCAAGGTCGACGACAG
CAGTCGGCTGTTGTTCGACCTTGCGCGTCGTCTGCCTTGTGTCACCTCAT
TAGTGGGCCGGTCTACACCTTTGCGGTTTATGTTGCCCCATCCGGGGCCA
CACACAGGAGAAAGGCCAACGCTGTATTGTTGGAACAAGCGGGAGGAAAC
CCGAAGGAAGCGGGCCTGCACTCATTGCGAATCGGTGCCGCCAGCACATT
GGTAGTCGGAGGAGGGATACCAAAGAGGGTTATTCAGAGAGAAGGTAGAT
GGAAGGGGGGTTGCTTGTTTATTTTCTTTCTGCACCATCTTTTGATGTGA back to top
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