mRNA_H-canaliculatus_F_contig10.14.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10.14.1
Unique NamemRNA_H-canaliculatus_F_contig10.14.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10.14.1 vs. uniprot
Match: A0A6H5K718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K718_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.260e-12
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 2 
Query:  209 HRRKANAVLLEQAGGNPKEAGLHSLRIGAASTLVVGGGIPKRVIQREGRWKGG 367
            + +  +A ++E+AGGNPK+ GLHSLRIGAA+TL  GG +P R+IQ EGRWK G
Sbjct:  211 YSKALSAQIVEKAGGNPKQVGLHSLRIGAATTLAAGGDVPDRIIQGEGRWKEG 263
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BLAST of mRNA_H-canaliculatus_F_contig10.14.1 vs. uniprot
Match: A0A6H5JL16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL16_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.970e-12
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 2 
Query:  233 LLEQAGGNPKEAGLHSLRIGAASTLVVGGGIPKRVIQREGRWKGG 367
            ++E+AGG+PK+ GLHSLRIGA +TL  GG +P R  QREGRWK G
Sbjct:   39 IVEEAGGDPKQVGLHSLRIGATTTLAAGGDVPDRTTQREGRWKEG 83
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BLAST of mRNA_H-canaliculatus_F_contig10.14.1 vs. uniprot
Match: A0A6H5KTP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP7_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.800e-10
Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = 2 
Query:  233 LLEQAGGNPKEAGLHSLRIGAASTLVVGGGIPKRVIQREGRWK 361
            ++++AGG+PK+ GLHSLRIGAA+TL  GG +P R+IQ EGRWK
Sbjct:  838 IVDKAGGDPKQVGLHSLRIGAATTLAAGGDVPDRIIQSEGRWK 880
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K718_9PHAE1.260e-1260.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL16_9PHAE3.970e-1264.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTP7_9PHAE2.800e-1065.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10contigH-canaliculatus_F_contig10:18817..19222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_003870.1
Exons1
Model size406
Cds size375
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928625.375483-UTR-H-canaliculatus_F_contig10:18816..188471622928625.375483-UTR-H-canaliculatus_F_contig10:18816..18847Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10 18817..18847 +
1696845498.7987306-UTR-H-canaliculatus_F_contig10:18816..188471696845498.7987306-UTR-H-canaliculatus_F_contig10:18816..18847Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10 18817..18847 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928625.3914878-CDS-H-canaliculatus_F_contig10:18847..192221622928625.3914878-CDS-H-canaliculatus_F_contig10:18847..19222Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10 18848..19222 +
1696845498.8311677-CDS-H-canaliculatus_F_contig10:18847..192221696845498.8311677-CDS-H-canaliculatus_F_contig10:18847..19222Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10 18848..19222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10.14.1prot_H-canaliculatus_F_contig10.14.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10 18848..19222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10.14.1

>prot_H-canaliculatus_F_contig10.14.1 ID=prot_H-canaliculatus_F_contig10.14.1|Name=mRNA_H-canaliculatus_F_contig10.14.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp
MGSPSLFGSHVHNVLNVTGMQGRRQQSAVVRPCASSALCHLISGPVYTFA
VYVAPSGATHRRKANAVLLEQAGGNPKEAGLHSLRIGAASTLVVGGGIPK
RVIQREGRWKGGCLFIFFLHHLLM*
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mRNA from alignment at H-canaliculatus_F_contig10:18817..19222+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10.14.1 ID=mRNA_H-canaliculatus_F_contig10.14.1|Name=mRNA_H-canaliculatus_F_contig10.14.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=406bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:18817..19222+ (Hapterophycus canaliculatus Oshoro5f female)
GTATGGAGGAGCTCATATCGGTAGAAGAACCATGGGTTCGCCTTCTCTGT
TTGGTTCCCACGTCCACAACGTGTTAAATGTCACTGGGATGCAAGGTCGA
CGACAGCAGTCGGCTGTTGTTCGACCTTGCGCGTCGTCTGCCTTGTGTCA
CCTCATTAGTGGGCCGGTCTACACCTTTGCGGTTTATGTTGCCCCATCCG
GGGCCACACACAGGAGAAAGGCCAACGCTGTATTGTTGGAACAAGCGGGA
GGAAACCCGAAGGAAGCGGGCCTGCACTCATTGCGAATCGGTGCCGCCAG
CACATTGGTAGTCGGAGGAGGGATACCAAAGAGGGTTATTCAGAGAGAAG
GTAGATGGAAGGGGGGTTGCTTGTTTATTTTCTTTCTGCACCATCTTTTG
ATGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10:18817..19222+

>mRNA_H-canaliculatus_F_contig10.14.1 ID=mRNA_H-canaliculatus_F_contig10.14.1|Name=mRNA_H-canaliculatus_F_contig10.14.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:18817..19222+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTTCGCCTTCTCTGTTTGGTTCCCACGTCCACAACGTGTTAAATGT
CACTGGGATGCAAGGTCGACGACAGCAGTCGGCTGTTGTTCGACCTTGCG
CGTCGTCTGCCTTGTGTCACCTCATTAGTGGGCCGGTCTACACCTTTGCG
GTTTATGTTGCCCCATCCGGGGCCACACACAGGAGAAAGGCCAACGCTGT
ATTGTTGGAACAAGCGGGAGGAAACCCGAAGGAAGCGGGCCTGCACTCAT
TGCGAATCGGTGCCGCCAGCACATTGGTAGTCGGAGGAGGGATACCAAAG
AGGGTTATTCAGAGAGAAGGTAGATGGAAGGGGGGTTGCTTGTTTATTTT
CTTTCTGCACCATCTTTTGATGTGAATGGGTTCGCCTTCTCTGTTTGGTT
CCCACGTCCACAACGTGTTAAATGTCACTGGGATGCAAGGTCGACGACAG
CAGTCGGCTGTTGTTCGACCTTGCGCGTCGTCTGCCTTGTGTCACCTCAT
TAGTGGGCCGGTCTACACCTTTGCGGTTTATGTTGCCCCATCCGGGGCCA
CACACAGGAGAAAGGCCAACGCTGTATTGTTGGAACAAGCGGGAGGAAAC
CCGAAGGAAGCGGGCCTGCACTCATTGCGAATCGGTGCCGCCAGCACATT
GGTAGTCGGAGGAGGGATACCAAAGAGGGTTATTCAGAGAGAAGGTAGAT
GGAAGGGGGGTTGCTTGTTTATTTTCTTTCTGCACCATCTTTTGATGTGA
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