mRNA_H-canaliculatus_F_contig11436.1264.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11436.1264.1
Unique NamemRNA_H-canaliculatus_F_contig11436.1264.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11436.1264.1 vs. uniprot
Match: D8LSP3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSP3_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 5.520e-47
Identity = 94/166 (56.63%), Postives = 116/166 (69.88%), Query Frame = 1 
Query:    1 MWSCRLPALLSTLLWSTQAFFVPPSCTNKGHLRFRSQGQDVEQPSARCSGRAAVDNASISRHQRQRTGASAAVMSDTGSACGRKAFLTKITGTAAGAVLAAAAVAPKMSEAKEAAVDTPVDWTAEFGEVKRATDLVLSDLRGLTTKGEWAQLMEQAKGYDQSMRKG 498
            MWS  L ALLST LWSTQAF VP   T +G +R RS G   +QP A+  GR     A+    +++RT A++A+  +TGS C RK FL+ +T   AGA LAA  + P M+ AK+AA D+PVDWTAEFG VK+ATDLVL DL+ L T G+W QLMEQAKGYDQS+RKG
Sbjct:    1 MWSRPLSALLSTFLWSTQAFLVPLFATGRGEIRCRSPGYPQQQPPAQ--GRRPTIAAATRGQRQERTSATSAMSDNTGS-CDRKGFLSDLTRNVAGAGLAAITLGPNMAVAKQAA-DSPVDWTAEFGSVKKATDLVLKDLKTLATDGDWEQLMEQAKGYDQSIRKG 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11436.1264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSP3_ECTSI5.520e-4756.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11436contigH-canaliculatus_F_contig11436:192..2261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.2
Seed ortholog evalue2.2e-37
Seed eggNOG ortholog2880.D8LSP3
EggNOG OGs2EUUH@1,2SWXV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003120.1
Exons3
Model size501
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11436.1264.1prot_H-canaliculatus_F_contig11436.1264.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11436 192..2261 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928827.0107539-CDS-H-canaliculatus_F_contig11436:191..3501622928827.0107539-CDS-H-canaliculatus_F_contig11436:191..350Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11436 192..350 -
1696845580.1116354-CDS-H-canaliculatus_F_contig11436:191..3501696845580.1116354-CDS-H-canaliculatus_F_contig11436:191..350Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11436 192..350 -
1622928827.0635571-CDS-H-canaliculatus_F_contig11436:913..11291622928827.0635571-CDS-H-canaliculatus_F_contig11436:913..1129Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11436 914..1129 -
1696845580.1242034-CDS-H-canaliculatus_F_contig11436:913..11291696845580.1242034-CDS-H-canaliculatus_F_contig11436:913..1129Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11436 914..1129 -
1622928827.078003-CDS-H-canaliculatus_F_contig11436:2135..22611622928827.078003-CDS-H-canaliculatus_F_contig11436:2135..2261Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11436 2136..2261 -
1696845580.134179-CDS-H-canaliculatus_F_contig11436:2135..22611696845580.134179-CDS-H-canaliculatus_F_contig11436:2135..2261Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11436 2136..2261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11436.1264.1

>prot_H-canaliculatus_F_contig11436.1264.1 ID=prot_H-canaliculatus_F_contig11436.1264.1|Name=mRNA_H-canaliculatus_F_contig11436.1264.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=167bp
MWSCRLPALLSTLLWSTQAFFVPPSCTNKGHLRFRSQGQDVEQPSARCSG
RAAVDNASISRHQRQRTGASAAVMSDTGSACGRKAFLTKITGTAAGAVLA
AAAVAPKMSEAKEAAVDTPVDWTAEFGEVKRATDLVLSDLRGLTTKGEWA
QLMEQAKGYDQSMRKG*
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mRNA from alignment at H-canaliculatus_F_contig11436:192..2261-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11436.1264.1 ID=mRNA_H-canaliculatus_F_contig11436.1264.1|Name=mRNA_H-canaliculatus_F_contig11436.1264.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2070bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11436:192..2261- (Hapterophycus canaliculatus Oshoro5f female)
ATGTGGTCATGCCGGTTACCCGCGCTGCTCTCCACTCTTCTGTGGTCCAC
GCAGGCTTTTTTTGTGCCCCCGTCTTGTACGAATAAAGGACACCTACGAT
TCCGTTCCCAAGGACAGGACGTCGAGGTACGACGGTATGTGATACCCCCA
CGACGGGCCCGTTTGCCTCAAACTACTCATGGAGCAGCGCCATCTGTGCT
TACCATGCACCCTTGCTTCCTCAGCACGACATTGCGGGTATTGCTGGGTA
GACTGCGGCTGTCCTCTCCACATACTTCTCGATACTGCGACGCTTTGGAT
TTTGTTGCACAGAACCCAACTTGACGTTTTCAGGTATCATGTTGTTTGAA
ACCCTTCCAACCATGACACGTCGCGATGTCCTCCGCGATCCTTGTACAAT
GTTCTGGTAAGTTGTACGAAGTAGTAGTATACGCACAGTAGCAACAGCAG
CAGGGTGACTGGGATTGGTCAGAAACGCCTGCTTGATGGGTGCGCGGGGA
CGAAGGGAGTGGCTCGTTTTGGTCAAAACGACAGCTCTGCCGCTTTCTGG
ACACTTGCTTGACGGGATCTAAACAAGTAGGAGTGGTTTCGAATTTCGAA
CCCGTTCATGAATCATGATCGCATGCCTGCCTCTCTTGAGACTGCGTGTA
CCTGGTACTAAGGCGACGTACCTCTATGTAGCGTCAGTGGGGTGTTGCAC
GGATCAAGGACACCTATGGTGCCGGGCCATTATTCTGTCGCATGCGCTTG
CGGGCCTGCCTGGCCGCTGCCAACTTTCACCCCGGCATACCTACAAGCAG
CAACCCAAGGGACACAATTGGCGGAGCAAGGAACGCGCACGACAACCCTG
TTCAGTGCTGTTCCTGTCGCTTACGCAGTCAGCACGTCTGAAAACTTCTC
TCGCTGTGCCCGGAAGGGTTTCCACGTGCCGATGAGCCATTACAAGCCTT
TCTGCCTGGGGCTCGACTGTGCCCTAGGCGCCACCCAGATGTGGCCCTTC
GTGCAGGATCTCGCGAAGGCGGCCGAGGGCCTCGTGCACGTGTACTACAA
TGGGGGGGCACCGAACGCCATGGTTCCCACTCTCACTCTCACTCTCCCTC
TTTCTTCAACCCGTTGGCGAAAATGTTTACAGCAACCTTCGGCAAGATGC
AGCGGTAGGGCGGCGGTGGATAACGCCTCCATCTCCCGGCACCAGCGACA
ACGCACAGGGGCATCCGCTGCTGTGATGTCCGACACCGGCAGCGCATGCG
GGAGGAAGGCATTTTTGACGAAGATCACGGGCACTGCGGCAGGCGCTGTC
CTCGCGGCGGCAGCTGTCGCACCGAAAATGTCGGAAGCTAAAGAGGCGGT
ACGTGTCACTGTTTTGTTTTGTTTTTGTCGACTATTTCGTTGCTGCTTGT
TGCTCCGATCGGAAGTTTCAACGATCGAGACATTTCAGCACACCCATCTC
TACAAGGCCACAGCAGAGGCACGCTCTTGGCCGCCGCGGATGTGAAGGAA
AACCCCGCGTTCTTGGACGGGTTTTCGAAACGTGCTTGCCAACACCGCCC
GTCTACGTGTTGCAGCACTGAGGCCGCCGTTGCCGGCAGGCAGCCAGCGC
AGCGGTGGTCAGCCAAAAGTAGCAGACACCTCTAGCTGAGGAGCGTGCGT
ACCTGCTGTGCGTACCTGCTGCATCATCCTTGATGTCGCACAATGGACAC
GGACGAAACATCCACAGTGTTTTCGAGGGCGAACTCGAGAGGCTACCAAA
AGATTCCCATGTCAATGACAGCAGTGACAACGAGAGGGGGTATAAAACAA
CCATCGCGTCCGGCGCACTTCACCCGCGCCGTAAGGAATTCAACGACAAA
AAATCCTGAGTCGCCTTAACCTTCCGTGCTGTTGGCTCTTTGTTTCAAAA
ATGATCGACAGGCGGTAGACACTCCCGTGGACTGGACAGCGGAATTCGGA
GAGGTGAAGAGGGCGACAGATCTCGTTCTCAGCGACCTTAGGGGTCTCAC
CACCAAGGGAGAATGGGCGCAGCTGATGGAGCAGGCCAAGGGCTACGACC
AGTCCATGCGAAAAGGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11436:192..2261-

>mRNA_H-canaliculatus_F_contig11436.1264.1 ID=mRNA_H-canaliculatus_F_contig11436.1264.1|Name=mRNA_H-canaliculatus_F_contig11436.1264.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1002bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11436:192..2261- (Hapterophycus canaliculatus Oshoro5f female)
ATGTGGTCATGCCGGTTACCCGCGCTGCTCTCCACTCTTCTGTGGTCCAC
GCAGGCTTTTTTTGTGCCCCCGTCTTGTACGAATAAAGGACACCTACGAT
TCCGTTCCCAAGGACAGGACGTCGAGATGTGGTCATGCCGGTTACCCGCG
CTGCTCTCCACTCTTCTGTGGTCCACGCAGGCTTTTTTTGTGCCCCCGTC
TTGTACGAATAAAGGACACCTACGATTCCGTTCCCAAGGACAGGACGTCG
AGCAACCTTCGGCAAGATGCAGCGGTAGGGCGGCGGTGGATAACGCCTCC
ATCTCCCGGCACCAGCGACAACGCACAGGGGCATCCGCTGCTGTGATGTC
CGACACCGGCAGCGCATGCGGGAGGAAGGCATTTTTGACGAAGATCACGG
GCACTGCGGCAGGCGCTGTCCTCGCGGCGGCAGCTGTCGCACCGAAAATG
TCGGAAGCTAAAGAGGCGCAACCTTCGGCAAGATGCAGCGGTAGGGCGGC
GGTGGATAACGCCTCCATCTCCCGGCACCAGCGACAACGCACAGGGGCAT
CCGCTGCTGTGATGTCCGACACCGGCAGCGCATGCGGGAGGAAGGCATTT
TTGACGAAGATCACGGGCACTGCGGCAGGCGCTGTCCTCGCGGCGGCAGC
TGTCGCACCGAAAATGTCGGAAGCTAAAGAGGCGGCGGTAGACACTCCCG
TGGACTGGACAGCGGAATTCGGAGAGGTGAAGAGGGCGACAGATCTCGTT
CTCAGCGACCTTAGGGGTCTCACCACCAAGGGAGAATGGGCGCAGCTGAT
GGAGCAGGCCAAGGGCTACGACCAGTCCATGCGAAAAGGGTGAGCGGTAG
ACACTCCCGTGGACTGGACAGCGGAATTCGGAGAGGTGAAGAGGGCGACA
GATCTCGTTCTCAGCGACCTTAGGGGTCTCACCACCAAGGGAGAATGGGC
GCAGCTGATGGAGCAGGCCAAGGGCTACGACCAGTCCATGCGAAAAGGGT
GA
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