mRNA_H-canaliculatus_F_contig10099.124.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10099.124.1
Unique NamemRNA_H-canaliculatus_F_contig10099.124.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10099.124.1 vs. uniprot
Match: D7FIE4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIE4_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 4.230e-34
Identity = 89/161 (55.28%), Postives = 100/161 (62.11%), Query Frame = 1 
Query:    1 ARLVFVVSDADLVAYRRKLWLASLAMATALAAVLSVLVVECFVDRAWEARAGVVGGGXXXXXXXXXXXAFLSGAEGEGMAAATGAAVRGGGEEWARWLGDGGIAGGVSFRRHDCDTEWCYSRSLLGLWEWLLLFLEAGFCIALRHDLAPATGGIGVESFVL 483
            ARLVFVVSD DLVAY+RKLWLAS A   A  AVLSVL+VEC     W     + GG            AF+ G         + + V G  +E A           VS  R DCDTEWCYSRSLLGLWE+LLL +EAGFC+ALRHDLAPATGG+GVESFVL
Sbjct:  190 ARLVFVVSDGDLVAYKRKLWLASTAAIVAAVAVLSVLIVECVEGGTWNMGWSIRGGAG----------AFVGGG-------GSSSGVGGFDDETAAVGDQDRWEDNVSSSR-DCDTEWCYSRSLLGLWEYLLLAVEAGFCMALRHDLAPATGGVGVESFVL 332
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10099.124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIE4_ECTSI4.230e-3455.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10099contigH-canaliculatus_F_contig10099:182..2234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size2053
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10099.124.1prot_H-canaliculatus_F_contig10099.124.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10099 257..667 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928637.4901893-UTR-H-canaliculatus_F_contig10099:181..2561622928637.4901893-UTR-H-canaliculatus_F_contig10099:181..256Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10099 182..256 +
1696845506.895321-UTR-H-canaliculatus_F_contig10099:181..2561696845506.895321-UTR-H-canaliculatus_F_contig10099:181..256Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10099 182..256 +
1622928637.523397-UTR-H-canaliculatus_F_contig10099:667..22341622928637.523397-UTR-H-canaliculatus_F_contig10099:667..2234Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10099 668..2234 +
1696845506.9131725-UTR-H-canaliculatus_F_contig10099:667..22341696845506.9131725-UTR-H-canaliculatus_F_contig10099:667..2234Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10099 668..2234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928637.506688-CDS-H-canaliculatus_F_contig10099:256..6671622928637.506688-CDS-H-canaliculatus_F_contig10099:256..667Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10099 257..667 +
1696845506.9035733-CDS-H-canaliculatus_F_contig10099:256..6671696845506.9035733-CDS-H-canaliculatus_F_contig10099:256..667Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10099 257..667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10099.124.1

>prot_H-canaliculatus_F_contig10099.124.1 ID=prot_H-canaliculatus_F_contig10099.124.1|Name=mRNA_H-canaliculatus_F_contig10099.124.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=137bp
MATALAAVLSVLVVECFVDRAWEARAGVVGGGSGSGSGSLSASAFLSGAE
GEGMAAATGAAVRGGGEEWARWLGDGGIAGGVSFRRHDCDTEWCYSRSLL
GLWEWLLLFLEAGFCIALRHDLAPATGGIGVESFVL*
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mRNA from alignment at H-canaliculatus_F_contig10099:182..2234+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10099.124.1 ID=mRNA_H-canaliculatus_F_contig10099.124.1|Name=mRNA_H-canaliculatus_F_contig10099.124.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2053bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10099:182..2234+ (Hapterophycus canaliculatus Oshoro5f female)
GCAAGGTTGGTTTTCGTTGTGTCCGATGCCGATCTCGTCGCCTACCGTCG
AAAGTTGTGGTTGGCGTCGCTGGCGATGGCCACGGCCTTGGCGGCCGTTC
TGTCGGTGCTCGTCGTGGAGTGCTTCGTGGACCGCGCGTGGGAAGCGAGA
GCGGGGGTCGTCGGCGGTGGTAGCGGGAGCGGGAGCGGAAGCTTGTCGGC
TTCCGCCTTTTTGTCCGGAGCTGAGGGGGAAGGGATGGCGGCGGCGACGG
GAGCCGCGGTGCGAGGCGGGGGAGAGGAGTGGGCGCGGTGGTTGGGAGAT
GGTGGCATCGCGGGTGGCGTTAGTTTTAGGAGGCACGACTGCGACACCGA
GTGGTGCTACTCGCGCAGCCTGCTGGGGTTGTGGGAGTGGCTGCTGCTCT
TCCTCGAGGCTGGATTTTGCATCGCGCTGAGGCACGACCTGGCTCCGGCT
ACCGGCGGGATCGGGGTGGAGAGCTTCGTGCTCTGACCTTCTCGCCCGCT
TGCCTGCCTGCCTGCCTGCCTGCCTCCTTTCCTCCTCATTTTAGGAGCTT
GATGTGTCTTGTAAGGCAGGTCGTTGTGTACTTGTTCGCCGCCACGCGGC
ATTCTCGGCGTTCGATGGTCGGTGTGGTTCGTTTCTGCACTCAAAATGTT
TTCGTTTTTTTTCTCGTTCAATCTTTTCGTTGTTTCTTGTGATTCGTACC
AGTATGCGTGCGGGCGAAACGAGACGAGGCCCATGGGTGCAGTGCGGTGC
GTCAGAGCAAGTTTTTAGAAGCCGTCCGGTAATTTTGCGTGAGCCAGGAG
ATATCCAACCTTGCGAAGCAGATCTCCGGGATTCATCGTGCACCTGGCGC
TCCTCTGGGAGTCTCCTCGAAGCATAGCAGAAGCCACCCTTGCTCATGAT
TTCCTACTCGTCGCTTGCGACCTCGCTGTCGGGGGTAACGACGTTCTCGA
GGTCGAGAATCACACCCTTGAGTCGCGCCCTTGGTACCACCGCCTTCGTT
TCCCCGGGACAATTAATCCCTTGCTCGTGGGGTAAGCTGAGGCGGACCGG
TTCTGTCATTTTTTTCTAGCGGCTCGTACTGGCCGGATGCTCGGACGAGG
CCGTACCGGTTGTCTCTCGCGCTCCGCGACTCTCCGAGCGCGAGTCGCGA
CACCCCCGATCTGACAACCGGCAAGCGCGGACCTGGGCCCTGCCTTGTCA
CGCCGGCAAACTTTGGGGGGCTGCCGAACGATGTGTACAGATCCGGGGGG
TTCAAATTATCATCTTTTTGCGGTCTCGAGCGCGTTTGCGTCCATGTGTT
TGTGCGGCAAAAAACGACCTGTCTTGGTGTCCGGTGATAACCCGCTGACC
GGCGCAAGAAGAGTTACGCTTTCCATAGCTTTTTTGGCGCGGACGCTTTA
TTGTTTTCCTATTGCTTCTCCGTCGACTTTGGGGCGACGGCAGCAGCAGC
GCTGACGCCAGGAGCATTCTTCCTGTTCGTCCTACTGTAGGTGTAACTTG
CGTGCGTCAGCGGTAGCCCAGACGTTGAGTTTTTTCGAGTCCAAGATGGA
TCGTTTGCGTTGTGTGTCGTGGTGCAGATTCAATCCAGTCTCAGTAGCAT
GACGGGACATTTGTTCGAGGAGAAAGATGCCACGGGGGCTCCGGGTCGAC
AGCAAAAGTATGCAGTCTAGATTGCAGCACGAAATGTTATCTCGAGGACC
CGGTTTCGGGTCAAGGATTCAAAGTTCGAAGCGATTTTCGGGGTCGTGTT
AAGTAGGGTGTGTGCCCTACTCGGGGTAGGTCCAGATTTTAGAAAGCAAA
TACTGTACGACGGGTATTGCGAAAGTTGTGGCCACGTCCTGGAGCAGTGA
AATCCCTGCCGGGTGATTCCCCCGGCTCTCCGGTATAGTCCATCCGTCAG
CCTACCCCAAGCGGGGCATGGTTGCCCCCACCCCCAGGTATTATGTCTGC
CGACTGTCTCCGGGTAGGAAGAAAGGGGGGTTTGACCTGTGGGTCTCTGG
GTTCGATAAACAAAGACACGAAAGATGCAAGCGTTGCAGCCCCCCAGTAA
ACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10099:182..2234+

>mRNA_H-canaliculatus_F_contig10099.124.1 ID=mRNA_H-canaliculatus_F_contig10099.124.1|Name=mRNA_H-canaliculatus_F_contig10099.124.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=822bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10099:182..2234+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCACGGCCTTGGCGGCCGTTCTGTCGGTGCTCGTCGTGGAGTGCTT
CGTGGACCGCGCGTGGGAAGCGAGAGCGGGGGTCGTCGGCGGTGGTAGCG
GGAGCGGGAGCGGAAGCTTGTCGGCTTCCGCCTTTTTGTCCGGAGCTGAG
GGGGAAGGGATGGCGGCGGCGACGGGAGCCGCGGTGCGAGGCGGGGGAGA
GGAGTGGGCGCGGTGGTTGGGAGATGGTGGCATCGCGGGTGGCGTTAGTT
TTAGGAGGCACGACTGCGACACCGAGTGGTGCTACTCGCGCAGCCTGCTG
GGGTTGTGGGAGTGGCTGCTGCTCTTCCTCGAGGCTGGATTTTGCATCGC
GCTGAGGCACGACCTGGCTCCGGCTACCGGCGGGATCGGGGTGGAGAGCT
TCGTGCTCTGAATGGCCACGGCCTTGGCGGCCGTTCTGTCGGTGCTCGTC
GTGGAGTGCTTCGTGGACCGCGCGTGGGAAGCGAGAGCGGGGGTCGTCGG
CGGTGGTAGCGGGAGCGGGAGCGGAAGCTTGTCGGCTTCCGCCTTTTTGT
CCGGAGCTGAGGGGGAAGGGATGGCGGCGGCGACGGGAGCCGCGGTGCGA
GGCGGGGGAGAGGAGTGGGCGCGGTGGTTGGGAGATGGTGGCATCGCGGG
TGGCGTTAGTTTTAGGAGGCACGACTGCGACACCGAGTGGTGCTACTCGC
GCAGCCTGCTGGGGTTGTGGGAGTGGCTGCTGCTCTTCCTCGAGGCTGGA
TTTTGCATCGCGCTGAGGCACGACCTGGCTCCGGCTACCGGCGGGATCGG
GGTGGAGAGCTTCGTGCTCTGA
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