mRNA_H-canaliculatus_F_contig10891.831.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10891.831.1
Unique NamemRNA_H-canaliculatus_F_contig10891.831.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10891.831.1 vs. uniprot
Match: A0A6H5JJP7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJP7_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.500e-26
Identity = 68/112 (60.71%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:    7 QFSLTFLAVLAILGSALGFQQVAPHGAPSTASSRFGGLSLQ---GSSFAARPLRASATGAPAAAXXXTASSRASGNSRRRQWVSMQFGEGGGPIEKGTMPSYEEEQEKAFFN 333
            Q+SL FLAV+A+LGS LGFQ VAP G P+   SR  G+S      SSF ARP+ A+A G         A+ RAS + RR+Q  SMQFGEGGGPIEKGTMPSYEEEQ+KAFFN
Sbjct:    2 QYSLVFLAVVAMLGSVLGFQ-VAPRGLPTA--SRCSGVSTSPRASSSFTARPVAATAAGG--------AAPRASAHKRRQQRFSMQFGEGGGPIEKGTMPSYEEEQDKAFFN 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10891.831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJP7_9PHAE1.500e-2660.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10891contigH-canaliculatus_F_contig10891:1719..4474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_000740.1
Exons3
Model size333
Cds size333
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10891.831.1prot_H-canaliculatus_F_contig10891.831.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10891 1719..4474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928757.5062318-CDS-H-canaliculatus_F_contig10891:1718..17841622928757.5062318-CDS-H-canaliculatus_F_contig10891:1718..1784Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10891 1719..1784 +
1696845552.5413208-CDS-H-canaliculatus_F_contig10891:1718..17841696845552.5413208-CDS-H-canaliculatus_F_contig10891:1718..1784Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10891 1719..1784 +
1622928757.5194318-CDS-H-canaliculatus_F_contig10891:3299..34921622928757.5194318-CDS-H-canaliculatus_F_contig10891:3299..3492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10891 3300..3492 +
1696845552.553386-CDS-H-canaliculatus_F_contig10891:3299..34921696845552.553386-CDS-H-canaliculatus_F_contig10891:3299..3492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10891 3300..3492 +
1622928757.5870237-CDS-H-canaliculatus_F_contig10891:4400..44741622928757.5870237-CDS-H-canaliculatus_F_contig10891:4400..4474Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10891 4401..4474 +
1696845552.5612018-CDS-H-canaliculatus_F_contig10891:4400..44741696845552.5612018-CDS-H-canaliculatus_F_contig10891:4400..4474Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10891 4401..4474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10891.831.1

>prot_H-canaliculatus_F_contig10891.831.1 ID=prot_H-canaliculatus_F_contig10891.831.1|Name=mRNA_H-canaliculatus_F_contig10891.831.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=111bp
MQQFSLTFLAVLAILGSALGFQQVAPHGAPSTASSRFGGLSLQGSSFAAR
PLRASATGAPAAAAGATASSRASGNSRRRQWVSMQFGEGGGPIEKGTMPS
YEEEQEKAFFN
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mRNA from alignment at H-canaliculatus_F_contig10891:1719..4474+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10891.831.1 ID=mRNA_H-canaliculatus_F_contig10891.831.1|Name=mRNA_H-canaliculatus_F_contig10891.831.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2756bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10891:1719..4474+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGCAGTTCTCTCTCACGTTCCTCGCGGTGCTGGCTATCCTGGGCTC
GGCGCTCGGATTCCAGGTGGGGGTGGAAGTCGAGCTGGTAACATGAGTCC
GGGCACCCTTAGAGACAGCAGCTGCCGCTGGTCGGAAAATTCTGCCGCGC
GAGTGACGTTGACGTTGCACGAACACGTATGTTTGTCTCTGCGCTATTTT
TCTGGACTTGCGCTTCGCGGCCGGGTTGCAGGCCCTCATCAGCGCGCGCG
ACGGGCGTGCCCGCTCACCCCTTAGAAAATTACGAGGCTTTCTGGCAGGG
ACGCGCTCTGTTGCTCGGTGCTTTTGATGGCGGCCCTGAATCAGACCCAA
TGGGAGGGGGAATGATGGTGCATGGTGCACCCGTTGTGTTGCTGCGGTCC
GTCTCTGCAAACAATTATTGTATCTATCTAAACTTCATTTCCTTCTCTCG
TAAAATTGTTGCTTCGAAGCACAAAATAGTTTTGACCGCGACTGAAATTT
CTTTTTAAGGCAAAACTGCATGCTGCTGTACATGGATGGGACGAGATACA
CCCGTATGATGGTGGTCTAAATCTTTCGAGATGAGCGCTGAGAGACATCA
CGCCCTCAGCAAAACCCCCGAGCCCTCGAGATCCAGCACTAGTGCTGTAG
TCACGAGGGGCATTGGCATAGCAGACGCGCCGCCGCCTTTTCCTCGGGGC
CCCGCGGCCTGGAATGACTAGGCCACGTCCGCGCGAGTGCTGCTTCCGGT
GAGGTTGCCGCGTGGTCTGGTCAGGCGGGACGAAGCGAGAGAAGACGCGC
CGCTGCCTTTGCTCGCGGCCCCTTGGCCTCTCACGGCTCGGTCGCGGGGC
GGGGAGGACGTCGACGTGCTGCCTCCGCTGTCTCCGCTCCCGCTTCCTGC
CCCGCAGCTGCCGCCATCGCTGCCTCCTCCGCGCAAGCTGCAGTCGCTGA
TGTTTGCCGCCATTGCTGTGTCACCAACGCTGAACAAAGACCTGGCAATG
AACCCTCACTGTTTTGAACTCAACAGAAGCCTCGGGGTACGCCTCGCACG
ACGCACCTCAGGAGGTGTTCTAGCGGTGTTGTCATGTTTTCTTTAAAAAA
GACCCGATGTCGTGGGGGAAAACATCATTTTTAGACGAATTCCTTCGAAG
AAAAGGAGTTGACACCGCCAGAGCAATATCCGTATCCAGGTAGTCGTGAG
GATCCTTCCGGTATCTTCAGTCAGGCTGAAGTGGGCGGGGCGGTGCTATA
TATCTGTTACGTGCGACGGGTACTGACTGTGCACTTGTGCGGAGTTGGAA
GTTGGAAGCTCAGGGCGCGTCGTCGTCCCCTGCGGTGTCCAACCGTCGGT
AAGGCGCGGCTGGGATCTCAATAATTGTCAGGAACTCCTGCACCCACCGG
TGGTTCTCACGATTCGCAAGTTCGACACAAGGGTTTCGAGGGGGTTGCAA
GGGGGCAGGCACAAGTAGGACGGTGCCGAGCGGTATGTTTTCCTCTTCAC
TCTGTTTTTTCGGGAAAATAGTCAAATAGTCAACAACACCAAAAAGTGAT
ACGCCGTGTTTTGTCCCACCCGCCTCCGGAGCAGGTCGCCCCCCACGGGG
CACCGTCGACTGCAAGCTCTCGCTTCGGGGGCCTTTCGCTGCAGGGGTCG
TCCTTCGCGGCCAGGCCGTTGCGAGCGTCGGCGACAGGGGCACCAGCAGC
AGCAGCAGGAGCAACAGCATCGTCCCGAGCGTCCGGGAACAGCAGGAGGC
GGCAATGGGTCAGCATGCAGTTCGGTGAGGGGGGCGTACAGCATTTTCGT
CGCGTCCCGAGGTGTAAGAGTCGATGGAAGAGCGGAGAGACAACTTTACG
GGAGGAACATATCCTCGTCCAGTCCGAGACTCGAGCGACACGACGCGGGA
GGGCCGCGGGTGTCGGATTTCCTTGCACTCCTTACGTTTTGAAAGGTTTC
GTGCCCCGCCGGGGATAAAAAAGACGAAGTTAGAGTGTGTTTCACTTGAG
AGCAAAGGGTTTTCCACTTTAAAGTAAAAGCGTTTTCCACTTCAAAGTAA
AAGGGTTTTCCACGCGTTGCTTGTTTTGCCGGCAGTGGGCCAGCCAGCGT
GTAGTTCGCCTAGGGGCGTTTTTCGCGTGATTTCTGTCTTTGGCTGTTTC
TTCGACACGCGACTCGTGGCTCCTGCGTGGGGGGAGTTTTTCTCAGCGGA
ATTTTCTCGTCCTGTATTTCCTCTGCTGGTGGCACAAAATCTCCGCCGCA
CGAGGGGTTCGGGCCCGAAAAAACGTCCACAAGCTGTCGGCGGTAGAGAG
TAGAGATTCGTCGCTGAGGTGGACGGGGCACTTATCGCGTGATCTGGTTC
CCGCCCCCGCCTCGTTCGCGCGGTGCCGTGCCGACCGACGAGCCCTCGGT
GGAACTCCATCCTGCTTTCGCCGCCGCTGGCTCCGCTTTCCTCCCGATCC
CTGTCTCCCCGACCCGACCCTACCCCGACCCTACCCGACCCCTTCGTGGT
CGGCTATTCCACCGGAGGTGCCGTTTCGGTCCGTGATGCACCTCGGGTGT
CTCGGAGGAAAACGAGGGTTTCCGCACCTTTCTCGCTCGAACTTGATCGC
CCCGGTTGTTGCTCTTGCTGTCGATGGTGGCGCCGCCTGGTTCCTATGCC
CGTGGCGGTTTCGTCTTTTATTTCTTTCTCAGGGGAAGGAGGAGGGCCGA
TCGAGAAGGGCACCATGCCGTCCTACGAGGAGGAGCAGGAGAAGGCTTTC
TTTAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10891:1719..4474+

>mRNA_H-canaliculatus_F_contig10891.831.1 ID=mRNA_H-canaliculatus_F_contig10891.831.1|Name=mRNA_H-canaliculatus_F_contig10891.831.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=666bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10891:1719..4474+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGCAGTTCTCTCTCACGTTCCTCGCGGTGCTGGCTATCCTGGGCTC
GGCGCTCGGATTCCAGATGCAGCAGTTCTCTCTCACGTTCCTCGCGGTGC
TGGCTATCCTGGGCTCGGCGCTCGGATTCCAGCAGGTCGCCCCCCACGGG
GCACCGTCGACTGCAAGCTCTCGCTTCGGGGGCCTTTCGCTGCAGGGGTC
GTCCTTCGCGGCCAGGCCGTTGCGAGCGTCGGCGACAGGGGCACCAGCAG
CAGCAGCAGGAGCAACAGCATCGTCCCGAGCGTCCGGGAACAGCAGGAGG
CGGCAATGGGTCAGCATGCAGTTCGCAGGTCGCCCCCCACGGGGCACCGT
CGACTGCAAGCTCTCGCTTCGGGGGCCTTTCGCTGCAGGGGTCGTCCTTC
GCGGCCAGGCCGTTGCGAGCGTCGGCGACAGGGGCACCAGCAGCAGCAGC
AGGAGCAACAGCATCGTCCCGAGCGTCCGGGAACAGCAGGAGGCGGCAAT
GGGTCAGCATGCAGTTCGGGGAAGGAGGAGGGCCGATCGAGAAGGGCACC
ATGCCGTCCTACGAGGAGGAGCAGGAGAAGGCTTTCTTTAACGGGAAGGA
GGAGGGCCGATCGAGAAGGGCACCATGCCGTCCTACGAGGAGGAGCAGGA
GAAGGCTTTCTTTAAC
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