mRNA_H-canaliculatus_F_contig1079.739.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE) HSP 1 Score: 214 bits (545), Expect = 3.700e-66 Identity = 115/229 (50.22%), Postives = 150/229 (65.50%), Query Frame = 1 Query: 1 EWKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIGFEPTLSDPCVYVYSSGKTDVVLSIYVDDVLLSVRSGS--QCGEESHAQILHMTKLGSASLVLGMVIAQED 681 +WKAAM+KE++SLK+H +ADLV I +LPP K IGSRW++K+K G KARL V+G+G RYGID GGT+AP R SSQ L+ IAA G + + FL + VEE+++V + G+E VTG V+KL KS YGL+QSPRN FA I+ IGF LSDPCVYVY +G T +L +YVDD L+ R+ S Q ++ + MT G A L+LGM I+Q D Sbjct: 8 QWKAAMDKEMRSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLTVQGWGQRYGIDYGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTLAGRTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQRD 236
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 232 bits (591), Expect = 4.680e-66 Identity = 126/259 (48.65%), Postives = 168/259 (64.86%), Query Frame = 1 Query: 1 EWKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIGFEPTLSDPCVYVYSSGKTDVVLSIYVDDVLLSVRSGS--QCGEESHAQILHMTKLGSASLVLGMVIAQEDGYIKVSQGIYYVNSVLQKFDFDESTPPPTP 771 +WKAAM+KE++SLK+H +ADLV I +LPP K IGSRW++K+K G KARL+V+G+G R+GIDCGGT+AP R SSQ L+ IAA G + + FL + VEE+++V + G+E VTG V+KL KS YGL+QSPRN FA I+ IGF LSDPCVYVY +G T +L +YVDD L+ ++ S Q ++ + MT G A L+LGM I+Q DG I VSQ Y +N +L K+ + P TP Sbjct: 904 QWKAAMDKEMKSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTLAGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQSDGEIIVSQHKYVMN-ILDKYQMVDCKPAATP 1161
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE) HSP 1 Score: 192 bits (489), Expect = 9.380e-54 Identity = 109/257 (42.41%), Postives = 145/257 (56.42%), Query Frame = 1 Query: 1 EWKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIGFEPTLSDPCVYVYSSGKTDVVLSIYVDDVLLSVRSGSQCGEESHAQILHMTKLGSASLVLGMVIAQEDGYIKVSQGIYYVNSVLQKFDFDESTPPPTP 771 +WKAAM+KE++SLK+H +ADLV + LPP K IGSRW++K+K G KARL+V+G+G R+GIDCGGT+ P R SSQ + IAA G + + FL + VEE+++V + G+E VTG V+KL KS YGL+QSPRN FA I+ IG LSDPC C ++ + MT G A L+LGM I+Q DG I VSQ Y +N +L K+ + P TP Sbjct: 340 QWKAAMDKEIRSLKDHDVADLVPVQRLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYGPVSRFSSQLVFMAIAAERGYDVETMDVVTAFLQSKVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGSTALLSDPC-------------------------DTKCCLKKQLSDKFKMTDGGPAELLLGMEISQRDGEITVSQHKYVMN-ILDKYQMVDCKPAATP 570
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE) HSP 1 Score: 187 bits (476), Expect = 1.230e-50 Identity = 93/192 (48.44%), Postives = 130/192 (67.71%), Query Frame = 1 Query: 1 EWKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIGFEPTLSDPCVYVYSSGKTDVVLSIYVDDVLLSV 576 EW+ AM KEL SL +H +ADL+ + ++P +IG+RWV++VK DG FKAR+VV+G+ ++GIDC TFAP +I SQR LL IAA++G + ++ FLN + ED++ ++ PGFE+ TGK V KL KS YGLRQSP N T + GF PT SDPCVY SG + ++L+++VDD+LL+V Sbjct: 658 EWEQAMLKELASLDDHDVADLIPVSSVPAGCSVIGTRWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLYGLRQSPSVWNLTIDKDLRGKGFTPTASDPCVYTKGSGNSYIMLTLFVDDILLTV 849
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 176 bits (446), Expect = 1.460e-46 Identity = 109/267 (40.82%), Postives = 146/267 (54.68%), Query Frame = 1 Query: 4 WKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIGFEPTLSDPCVYVYSSGKTDVVLSIYVDDVLLSVRSGSQCGEESHA---------QILHMTKLGSASLVLGMVIAQ--EDGYIKVSQGIYYVNSVLQKFDFDESTPPPTP 771 W AA E+E++SL + K+ LV +PPE K I S+WVFK K DGTFK R+V +G+ G+DCG T+AP RI S R + CI L + + FL A ++E+++V + PGFE G V+KL KS YGL QSP N T + IGF SDPCVY+Y + L++YVDD+LL+ G +S A + MT LG ASLVLGM I + E + +SQ Y S+L++F S P TP Sbjct: 1166 WNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDK-DGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLA-------GNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAY-CKSILERFGISGSKPTSTP 1423
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 176 bits (446), Expect = 1.470e-46 Identity = 109/267 (40.82%), Postives = 146/267 (54.68%), Query Frame = 1 Query: 4 WKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIGFEPTLSDPCVYVYSSGKTDVVLSIYVDDVLLSVRSGSQCGEESHA---------QILHMTKLGSASLVLGMVIAQ--EDGYIKVSQGIYYVNSVLQKFDFDESTPPPTP 771 W AA E+E++SL + K+ LV +PPE K I S+WVFK K DGTFK R+V +G+ G+DCG T+AP RI S R + CI L + + FL A ++E+++V + PGFE G V+KL KS YGL QSP N T + IGF SDPCVY+Y + L++YVDD+LL+ G +S A + MT LG ASLVLGM I + E + +SQ Y S+L++F S P TP Sbjct: 1331 WNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDK-DGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLA-------GNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAY-CKSILERFGMSGSKPTSTP 1588
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 170 bits (430), Expect = 1.290e-44 Identity = 104/261 (39.85%), Postives = 142/261 (54.41%), Query Frame = 1 Query: 1 EWKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIGFEPTLSDPCVYVYSSGKTDVVLSIYVDDVLLSVRSGSQCG--EESHAQILHMTKLGSASLVLGMVIAQE--DGYIKVSQGIYYVNSVLQKFDFDESTPPPTP 771 +W AA E+E+ SLKE ++ LV +PP K I S+WVFK K G+FK RLV +G+ G+DCG T+AP R S R L CIA L + + FL A + E+++V + PGFE G V++L KS YGL QSP N T + IGF P SD CVY+Y V L++YVDD+LL+ + ++ Q MT +G LVLGM I ++ G + +SQ Y S+L++F E P TP Sbjct: 473 QWNAAAEREIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDK-DGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYS-KSILERFGMSECKPTSTP 731
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE) HSP 1 Score: 170 bits (430), Expect = 1.350e-44 Identity = 97/262 (37.02%), Postives = 150/262 (57.25%), Query Frame = 1 Query: 1 EWKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIGFEPTLSDPCVYVYSSGKTDVVLSIYVDDVLLSVRSGSQCGEESHAQI---LHMTKLGSASLVLGMVIAQ--EDGYIKVSQGIYYVNSVLQKFDFDESTPPPTP 771 EWK A KE+ +L++H + +LV + ++P K++G+++VFK K DG FKARLVV G G D G ++AP RI S R I + + + FLNA + D++V PG + TG+ V KL +S YGL QSP N T ++ G++ T SDPCVYVY+SG V+L++YVDD+L++ Q ++ ++ MT +G +LG+ + + E G + +SQ +YVN++L++F E+ P TP Sbjct: 356 EWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILIT-GGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQE-HYVNTLLERFGMQEANPVSTP 615
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE) HSP 1 Score: 165 bits (418), Expect = 5.670e-43 Identity = 95/262 (36.26%), Postives = 148/262 (56.49%), Query Frame = 1 Query: 1 EWKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIGFEPTLSDPCVYVYSSGKTDVVLSIYVDDVLLSVRSGSQCGEESHAQI---LHMTKLGSASLVLGMVIAQ--EDGYIKVSQGIYYVNSVLQKFDFDESTPPPTP 771 EWK A KE+ +L++H + +LV + ++ K++G+++ FK K DG FKARLVV G G D G ++AP RI S R I + + + FLNA + D++V PG + TG+ V KL +S YGL QSP N T +I + G++ T SDPCVY Y+SG V+L++YVDD+L++ Q ++ ++ MT +G +LG+ + + E G + +SQ +YVN++L++F E+ P TP Sbjct: 581 EWKGACSKEMDNLRKHNVYNLVPLSSVRKGEKILGTKFAFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESITAFGWKRTQSDPCVYAYTSGNIIVILTVYVDDILIT-GGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQE-HYVNTLLERFGMQEANPVSTP 840
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5L2V7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2V7_9PHAE) HSP 1 Score: 152 bits (384), Expect = 9.240e-43 Identity = 76/159 (47.80%), Postives = 104/159 (65.41%), Query Frame = 1 Query: 1 EWKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIG 477 +WKAAM+KE++ K+H +ADLV I +LPP IGSRW++K+K G +ARL+ +G+G R+GIDCGGT+AP R SSQ L+ IAA G + + FL + VE +++V + +E VTG V++L KS YGL+QSPRN FA IE IG Sbjct: 8 QWKAAMDKEMRGPKDHDVADLVPIQSLPPGANPIGSRWLYKMKATGVMQARLIAQGWGQRHGIDCGGTYAPVRRFSSQLVLMAIAAERGYVVETMKVVTAFLQSNVEGEVYVRQAKRYEITDEVTGLPLVMELKKSSYGLKQSPRNFGNAFAKRIEEIG 166 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1079.739.1 >prot_H-canaliculatus_F_contig1079.739.1 ID=prot_H-canaliculatus_F_contig1079.739.1|Name=mRNA_H-canaliculatus_F_contig1079.739.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=142bp MEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEback to top mRNA from alignment at H-canaliculatus_F_contig1079:22220..23262+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1079.739.1 ID=mRNA_H-canaliculatus_F_contig1079.739.1|Name=mRNA_H-canaliculatus_F_contig1079.739.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1043bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1079:22220..23262+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1079:22220..23262+ >mRNA_H-canaliculatus_F_contig1079.739.1 ID=mRNA_H-canaliculatus_F_contig1079.739.1|Name=mRNA_H-canaliculatus_F_contig1079.739.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=852bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1079:22220..23262+ (Hapterophycus canaliculatus Oshoro5f female)back to top |