mRNA_H-canaliculatus_F_contig1079.739.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1079.739.1
Unique NamemRNA_H-canaliculatus_F_contig1079.739.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 3.700e-66
Identity = 115/229 (50.22%), Postives = 150/229 (65.50%), Query Frame = 1
Query:    1 EWKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIGFEPTLSDPCVYVYSSGKTDVVLSIYVDDVLLSVRSGS--QCGEESHAQILHMTKLGSASLVLGMVIAQED 681
            +WKAAM+KE++SLK+H +ADLV I +LPP  K IGSRW++K+K  G  KARL V+G+G RYGID GGT+AP  R SSQ  L+ IAA  G     + +   FL + VEE+++V +  G+E    VTG   V+KL KS YGL+QSPRN    FA  I+ IGF   LSDPCVYVY +G T  +L +YVDD  L+ R+ S  Q  ++  +    MT  G A L+LGM I+Q D
Sbjct:    8 QWKAAMDKEMRSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLTVQGWGQRYGIDYGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTLAGRTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQRD 236          
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 4.680e-66
Identity = 126/259 (48.65%), Postives = 168/259 (64.86%), Query Frame = 1
Query:    1 EWKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIGFEPTLSDPCVYVYSSGKTDVVLSIYVDDVLLSVRSGS--QCGEESHAQILHMTKLGSASLVLGMVIAQEDGYIKVSQGIYYVNSVLQKFDFDESTPPPTP 771
            +WKAAM+KE++SLK+H +ADLV I +LPP  K IGSRW++K+K  G  KARL+V+G+G R+GIDCGGT+AP  R SSQ  L+ IAA  G     + +   FL + VEE+++V +  G+E    VTG   V+KL KS YGL+QSPRN    FA  I+ IGF   LSDPCVYVY +G T  +L +YVDD  L+ ++ S  Q  ++  +    MT  G A L+LGM I+Q DG I VSQ  Y +N +L K+   +  P  TP
Sbjct:  904 QWKAAMDKEMKSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTLAGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQSDGEIIVSQHKYVMN-ILDKYQMVDCKPAATP 1161          
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 9.380e-54
Identity = 109/257 (42.41%), Postives = 145/257 (56.42%), Query Frame = 1
Query:    1 EWKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIGFEPTLSDPCVYVYSSGKTDVVLSIYVDDVLLSVRSGSQCGEESHAQILHMTKLGSASLVLGMVIAQEDGYIKVSQGIYYVNSVLQKFDFDESTPPPTP 771
            +WKAAM+KE++SLK+H +ADLV +  LPP  K IGSRW++K+K  G  KARL+V+G+G R+GIDCGGT+ P  R SSQ   + IAA  G     + +   FL + VEE+++V +  G+E    VTG   V+KL KS YGL+QSPRN    FA  I+ IG    LSDPC                             C ++  +    MT  G A L+LGM I+Q DG I VSQ  Y +N +L K+   +  P  TP
Sbjct:  340 QWKAAMDKEIRSLKDHDVADLVPVQRLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYGPVSRFSSQLVFMAIAAERGYDVETMDVVTAFLQSKVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGSTALLSDPC-------------------------DTKCCLKKQLSDKFKMTDGGPAELLLGMEISQRDGEITVSQHKYVMN-ILDKYQMVDCKPAATP 570          
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 1.230e-50
Identity = 93/192 (48.44%), Postives = 130/192 (67.71%), Query Frame = 1
Query:    1 EWKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIGFEPTLSDPCVYVYSSGKTDVVLSIYVDDVLLSV 576
            EW+ AM KEL SL +H +ADL+ + ++P    +IG+RWV++VK DG FKAR+VV+G+  ++GIDC  TFAP  +I SQR LL IAA++G     + ++  FLN  + ED++ ++ PGFE+    TGK  V KL KS YGLRQSP   N T    +   GF PT SDPCVY   SG + ++L+++VDD+LL+V
Sbjct:  658 EWEQAMLKELASLDDHDVADLIPVSSVPAGCSVIGTRWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLYGLRQSPSVWNLTIDKDLRGKGFTPTASDPCVYTKGSGNSYIMLTLFVDDILLTV 849          
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 1.460e-46
Identity = 109/267 (40.82%), Postives = 146/267 (54.68%), Query Frame = 1
Query:    4 WKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIGFEPTLSDPCVYVYSSGKTDVVLSIYVDDVLLSVRSGSQCGEESHA---------QILHMTKLGSASLVLGMVIAQ--EDGYIKVSQGIYYVNSVLQKFDFDESTPPPTP 771
            W AA E+E++SL + K+  LV    +PPE K I S+WVFK K DGTFK R+V +G+    G+DCG T+AP  RI S R + CI     L    + +   FL A ++E+++V + PGFE      G   V+KL KS YGL QSP N   T    +  IGF    SDPCVY+Y      + L++YVDD+LL+       G +S A         +   MT LG ASLVLGM I +  E   + +SQ  Y   S+L++F    S P  TP
Sbjct: 1166 WNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDK-DGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLA-------GNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAY-CKSILERFGISGSKPTSTP 1423          
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 1.470e-46
Identity = 109/267 (40.82%), Postives = 146/267 (54.68%), Query Frame = 1
Query:    4 WKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIGFEPTLSDPCVYVYSSGKTDVVLSIYVDDVLLSVRSGSQCGEESHA---------QILHMTKLGSASLVLGMVIAQ--EDGYIKVSQGIYYVNSVLQKFDFDESTPPPTP 771
            W AA E+E++SL + K+  LV    +PPE K I S+WVFK K DGTFK R+V +G+    G+DCG T+AP  RI S R + CI     L    + +   FL A ++E+++V + PGFE      G   V+KL KS YGL QSP N   T    +  IGF    SDPCVY+Y      + L++YVDD+LL+       G +S A         +   MT LG ASLVLGM I +  E   + +SQ  Y   S+L++F    S P  TP
Sbjct: 1331 WNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDK-DGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLA-------GNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAY-CKSILERFGMSGSKPTSTP 1588          
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.290e-44
Identity = 104/261 (39.85%), Postives = 142/261 (54.41%), Query Frame = 1
Query:    1 EWKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIGFEPTLSDPCVYVYSSGKTDVVLSIYVDDVLLSVRSGSQCG--EESHAQILHMTKLGSASLVLGMVIAQE--DGYIKVSQGIYYVNSVLQKFDFDESTPPPTP 771
            +W AA E+E+ SLKE ++  LV    +PP  K I S+WVFK K  G+FK RLV +G+    G+DCG T+AP  R  S R L CIA    L    + +   FL A + E+++V + PGFE      G   V++L KS YGL QSP N   T    +  IGF P  SD CVY+Y      V L++YVDD+LL+  +       ++   Q   MT +G   LVLGM I ++   G + +SQ  Y   S+L++F   E  P  TP
Sbjct:  473 QWNAAAEREIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDK-DGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYS-KSILERFGMSECKPTSTP 731          
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.350e-44
Identity = 97/262 (37.02%), Postives = 150/262 (57.25%), Query Frame = 1
Query:    1 EWKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIGFEPTLSDPCVYVYSSGKTDVVLSIYVDDVLLSVRSGSQCGEESHAQI---LHMTKLGSASLVLGMVIAQ--EDGYIKVSQGIYYVNSVLQKFDFDESTPPPTP 771
            EWK A  KE+ +L++H + +LV + ++P   K++G+++VFK K DG FKARLVV G     G D G ++AP  RI S R    I        + + +   FLNA  + D++V   PG    +  TG+  V KL +S YGL QSP   N T   ++   G++ T SDPCVYVY+SG   V+L++YVDD+L++     Q  ++   ++     MT +G    +LG+ + +  E G + +SQ  +YVN++L++F   E+ P  TP
Sbjct:  356 EWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILIT-GGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQE-HYVNTLLERFGMQEANPVSTP 615          
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 5.670e-43
Identity = 95/262 (36.26%), Postives = 148/262 (56.49%), Query Frame = 1
Query:    1 EWKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIGFEPTLSDPCVYVYSSGKTDVVLSIYVDDVLLSVRSGSQCGEESHAQI---LHMTKLGSASLVLGMVIAQ--EDGYIKVSQGIYYVNSVLQKFDFDESTPPPTP 771
            EWK A  KE+ +L++H + +LV + ++    K++G+++ FK K DG FKARLVV G     G D G ++AP  RI S R    I        + + +   FLNA  + D++V   PG    +  TG+  V KL +S YGL QSP   N T   +I + G++ T SDPCVY Y+SG   V+L++YVDD+L++     Q  ++   ++     MT +G    +LG+ + +  E G + +SQ  +YVN++L++F   E+ P  TP
Sbjct:  581 EWKGACSKEMDNLRKHNVYNLVPLSSVRKGEKILGTKFAFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESITAFGWKRTQSDPCVYAYTSGNIIVILTVYVDDILIT-GGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQE-HYVNTLLERFGMQEANPVSTP 840          
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Match: A0A6H5L2V7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2V7_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 9.240e-43
Identity = 76/159 (47.80%), Postives = 104/159 (65.41%), Query Frame = 1
Query:    1 EWKAAMEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVEGFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAPVEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*NTTFAHAIESIG 477
            +WKAAM+KE++  K+H +ADLV I +LPP    IGSRW++K+K  G  +ARL+ +G+G R+GIDCGGT+AP  R SSQ  L+ IAA  G     + +   FL + VE +++V +   +E    VTG   V++L KS YGL+QSPRN    FA  IE IG
Sbjct:    8 QWKAAMDKEMRGPKDHDVADLVPIQSLPPGANPIGSRWLYKMKATGVMQARLIAQGWGQRHGIDCGGTYAPVRRFSSQLVLMAIAAERGYVVETMKVVTAFLQSNVEGEVYVRQAKRYEITDEVTGLPLVMELKKSSYGLKQSPRNFGNAFAKRIEEIG 166          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1079.739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVC8_9PHAE3.700e-6650.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KY84_9PHAE4.680e-6648.65Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCZ9_9PHAE9.380e-5442.41Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KAG6_9PHAE1.230e-5048.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE1.460e-4640.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.470e-4640.82Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KL37_9PHAE1.290e-4439.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KE92_9PHAE1.350e-4437.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1R7_9PHAE5.670e-4336.26Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L2V7_9PHAE9.240e-4347.80Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1079contigH-canaliculatus_F_contig1079:22220..23262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score113.6
Seed ortholog evalue7.5e-23
Seed eggNOG ortholog15368.BRADI1G43020.1
KEGG koko:K20093
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size771
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1079.739.1prot_H-canaliculatus_F_contig1079.739.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1079 22235..22920 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928742.5692713-UTR-H-canaliculatus_F_contig1079:22219..222341622928742.5692713-UTR-H-canaliculatus_F_contig1079:22219..22234Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1079 22220..22234 +
1696845546.8339503-UTR-H-canaliculatus_F_contig1079:22219..222341696845546.8339503-UTR-H-canaliculatus_F_contig1079:22219..22234Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1079 22220..22234 +
1622928742.6724875-UTR-H-canaliculatus_F_contig1079:22920..230831622928742.6724875-UTR-H-canaliculatus_F_contig1079:22920..23083Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1079 22921..23083 +
1696845546.8739085-UTR-H-canaliculatus_F_contig1079:22920..230831696845546.8739085-UTR-H-canaliculatus_F_contig1079:22920..23083Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1079 22921..23083 +
1622928742.6888146-UTR-H-canaliculatus_F_contig1079:23095..232621622928742.6888146-UTR-H-canaliculatus_F_contig1079:23095..23262Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1079 23096..23262 +
1696845546.8856578-UTR-H-canaliculatus_F_contig1079:23095..232621696845546.8856578-UTR-H-canaliculatus_F_contig1079:23095..23262Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1079 23096..23262 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928742.587338-CDS-H-canaliculatus_F_contig1079:22234..224921622928742.587338-CDS-H-canaliculatus_F_contig1079:22234..22492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1079 22235..22492 +
1696845546.845951-CDS-H-canaliculatus_F_contig1079:22234..224921696845546.845951-CDS-H-canaliculatus_F_contig1079:22234..22492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1079 22235..22492 +
1622928742.6206183-CDS-H-canaliculatus_F_contig1079:22641..226661622928742.6206183-CDS-H-canaliculatus_F_contig1079:22641..22666Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1079 22642..22666 +
1696845546.8555276-CDS-H-canaliculatus_F_contig1079:22641..226661696845546.8555276-CDS-H-canaliculatus_F_contig1079:22641..22666Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1079 22642..22666 +
1622928742.6467223-CDS-H-canaliculatus_F_contig1079:22777..229201622928742.6467223-CDS-H-canaliculatus_F_contig1079:22777..22920Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1079 22778..22920 +
1696845546.8644443-CDS-H-canaliculatus_F_contig1079:22777..229201696845546.8644443-CDS-H-canaliculatus_F_contig1079:22777..22920Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1079 22778..22920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1079.739.1

>prot_H-canaliculatus_F_contig1079.739.1 ID=prot_H-canaliculatus_F_contig1079.739.1|Name=mRNA_H-canaliculatus_F_contig1079.739.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=142bp
MEKELQSLKEHKLADLVTIDTLPPEGKLIGSRWVFKVKPDGTFKARLVVE
GFGHRYGIDCGGTFAPAYRISSQRTLLCIAASEGLHEHHIILKYPFLNAP
VEEDMWVFRVPGFEEDHPVTGKHQVLKLLKSPYGLRQSPRN*
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mRNA from alignment at H-canaliculatus_F_contig1079:22220..23262+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1079.739.1 ID=mRNA_H-canaliculatus_F_contig1079.739.1|Name=mRNA_H-canaliculatus_F_contig1079.739.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1043bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1079:22220..23262+ (Hapterophycus canaliculatus Oshoro5f female)
GAGTGGAAGGCGGCCATGGAGAAGGAGCTTCAAAGCTTAAAGGAACACAA GCTGGCCGATCTCGTGACGATCGACACGCTTCCGCCGGAAGGAAAGCTTA TCGGCTCGCGCTGGGTGTTTAAAGTGAAACCGGACGGCACCTTCAAGGCC CGTCTGGTCGTTGAAGGCTTTGGACATCGTTATGGCATCGACTGCGGTGG AACGTTTGCTCCTGCCTACCGCATCAGCAGCCAGCGCACACTTCTATGCA TCGCTGCATCTGAAGGACTCCACGTTAGAGCCATGCCACGATAGGGTTGC ACCTTTTTGGTCCAAAGGTTGCTCATTTTGGGGCTTCTAAGATTAGAAAC CCCGACGGAAAATGGCCAGGGCGGGTCCGATTAGACCAACTGCCAACACA TATGGCTAGCCTGTACAATGAGGAGCACCACATCATTTTGAAGTATCGTG GAAGTCAATTCTTGCAGGAGATACAGGGCTTCTAAGGTTTTGATGGCCTG CAACCTTACGTGCAACCCTATCGTGGCACGGCTCGTTAAACGTCTGGACG CCAAACAGCGTTTCTCAACGCTCCGGTCGAGGAGGACATGTGGGTCTTCC GGGTCCCGGGATTTGAAGAGGACCACCCTGTGACTGGCAAACACCAGGTA CTGAAGCTCCTGAAGTCTCCGTACGGATTGAGGCAGAGTCCACGTAATTG AAACACGACGTTTGCACATGCTATCGAAAGCATCGGATTCGAACCGACCT TGTCGGATCCATGCGTGTACGTCTATAGTAGCGGCAAAACCGACGTCGTT CTCAGCATCTACGTGGACGATGTGCTTCTTTCTGTTCGGAGTGGATCCCA ATGTGGTGAAGAATGTTTGTGATTAGCTCATGCACAAATTCTCCATATGA CCAAGCTCGGATCAGCCAGCTTGGTGCTTGGAATGGTCATCGCGCAGGAA GACGGATACATCAAGGTGTCCCAGGGCATTTATTATGTGAACTCCGTTCT ACAAAAGTTTGATTTTGACGAATCTACCCCTCCACCGACTCCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1079:22220..23262+

>mRNA_H-canaliculatus_F_contig1079.739.1 ID=mRNA_H-canaliculatus_F_contig1079.739.1|Name=mRNA_H-canaliculatus_F_contig1079.739.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=852bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1079:22220..23262+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGAAGGAGCTTCAAAGCTTAAAGGAACACAAGCTGGCCGATCTCGT
GACGATCGACACGCTTCCGCCGGAAGGAAAGCTTATCGGCTCGCGCTGGG
TGTTTAAAGTGAAACCGGACGGCACCTTCAAGGCCCGTCTGGTCGTTGAA
GGCTTTGGACATCGTTATGGCATCGACTGCGGTGGAACGTTTGCTCCTGC
CTACCGCATCAGCAGCCAGCGCACACTTCTATGCATCGCTGCATCTGAAG
GACTCCACATGGAGAAGGAGCTTCAAAGCTTAAAGGAACACAAGCTGGCC
GATCTCGTGACGATCGACACGCTTCCGCCGGAAGGAAAGCTTATCGGCTC
GCGCTGGGTGTTTAAAGTGAAACCGGACGGCACCTTCAAGGCCCGTCTGG
TCGTTGAAGGCTTTGGACATCGTTATGGCATCGACTGCGGTGGAACGTTT
GCTCCTGCCTACCGCATCAGCAGCCAGCGCACACTTCTATGCATCGCTGC
ATCTGAAGGACTCCACGAGCACCACATCATTTTGAAGTATCGAGCACCAC
ATCATTTTGAAGTATCCGTTTCTCAACGCTCCGGTCGAGGAGGACATGTG
GGTCTTCCGGGTCCCGGGATTTGAAGAGGACCACCCTGTGACTGGCAAAC
ACCAGGTACTGAAGCTCCTGAAGTCTCCGTACGGATTGAGGCAGAGTCCA
CGTAATTGACGTTTCTCAACGCTCCGGTCGAGGAGGACATGTGGGTCTTC
CGGGTCCCGGGATTTGAAGAGGACCACCCTGTGACTGGCAAACACCAGGT
ACTGAAGCTCCTGAAGTCTCCGTACGGATTGAGGCAGAGTCCACGTAATT
GA
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