mRNA_H-canaliculatus_F_contig1078.732.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1078.732.1
Unique NamemRNA_H-canaliculatus_F_contig1078.732.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1078.732.1 vs. uniprot
Match: A0A6H5JJ81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ81_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 6.260e-20
Identity = 52/88 (59.09%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:    1 MRTTMTPLFFLAATALLPYGFDAFVILPAATSTRARGGNVSK---NMANAPTAEAIQERENARAALLESGGVDELMKMLTELRNDGSE 255
            M+TTMT LF LAA ALLP+G +AFV++PAATS   RGG V++    +  +PTAEA+Q+RE+ARAALLESGGVDEL++ +  +R + SE
Sbjct:    1 MKTTMTSLFSLAAAALLPWGHNAFVVVPAATSFGGRGGTVARLDSRIRASPTAEALQQREDARAALLESGGVDELLRKIAIMRGEESE 88
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BLAST of mRNA_H-canaliculatus_F_contig1078.732.1 vs. uniprot
Match: D7FWQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ9_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.690e-18
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:   13 MTPLFFLAATALLPYGFDAFVILPAATSTRARGGNV----SKNMANAPTAEAIQERENARAALLESGGVDELMKMLTELRNDGSE 255
            MTPLF LAA ALLP+G +AFVI+PAATS   RGGNV    S+  AN PTAEA+Q+RE+ARAALLESGGVDEL++ +  +R +  E
Sbjct:    1 MTPLFSLAAAALLPWGHNAFVIVPAATSLGGRGGNVARPESRIRAN-PTAEALQQREDARAALLESGGVDELLRKIAIMRGEEIE 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1078.732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJ81_9PHAE6.260e-2059.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWQ9_ECTSI1.690e-1863.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1078contigH-canaliculatus_F_contig1078:13802..16355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_004210.1
Exons2
Model size687
Cds size687
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928741.0526717-CDS-H-canaliculatus_F_contig1078:13801..141551622928741.0526717-CDS-H-canaliculatus_F_contig1078:13801..14155Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1078 13802..14155 -
1696845546.3579907-CDS-H-canaliculatus_F_contig1078:13801..141551696845546.3579907-CDS-H-canaliculatus_F_contig1078:13801..14155Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1078 13802..14155 -
1622928741.0683956-CDS-H-canaliculatus_F_contig1078:16022..163551622928741.0683956-CDS-H-canaliculatus_F_contig1078:16022..16355Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1078 16023..16355 -
1696845546.3662167-CDS-H-canaliculatus_F_contig1078:16022..163551696845546.3662167-CDS-H-canaliculatus_F_contig1078:16022..16355Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1078 16023..16355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1078.732.1prot_H-canaliculatus_F_contig1078.732.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1078 13802..16355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1078.732.1

>prot_H-canaliculatus_F_contig1078.732.1 ID=prot_H-canaliculatus_F_contig1078.732.1|Name=mRNA_H-canaliculatus_F_contig1078.732.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=229bp
MRTTMTPLFFLAATALLPYGFDAFVILPAATSTRARGGNVSKNMANAPTA
EAIQERENARAALLESGGVDELMKMLTELRNDGSEGEEGAPTAAAAPAAA
AAAVATSPSAKEAAPAAAAPIPPKAEAMLAPPEAEAAPASPKAEAAPAPP
KAEAAPAPPKAEAAPAPPKVEEAPAPSATEAAPSPPKAVAAPPAAPAPVA
APPLKKKKKLRGKKKAAAAAAAAAAQDA*
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mRNA from alignment at H-canaliculatus_F_contig1078:13802..16355-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1078.732.1 ID=mRNA_H-canaliculatus_F_contig1078.732.1|Name=mRNA_H-canaliculatus_F_contig1078.732.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2554bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1078:13802..16355- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGGACCACGATGACCCCTCTCTTCTTCCTAGCCGCCACGGCCCTCCT
ACCCTATGGCTTCGACGCTTTCGTTATTCTGCCGGCGGCGACGTCTACCA
GGGCACGTGGGGGGAACGTCTCTAAGAACATGGCAAATGCGCCGACAGCG
GAGGCAATACAGGAACGCGAGAACGCTCGAGCAGCTCTCTTGGAGTCGGG
CGGCGTGGACGAACTCATGAAAATGCTAACAGAGCTGAGGAACGACGGGA
GCGAGGGTGAAGAAGGTGCTCCTACTGCCGCTGCTGCTCCTGCTGCTGCA
GCTGCTGCCGTCGCTACCTCTCCGTCTGCGAAGGTGAGACGGGTTTAAAT
TCTCCAACGGGTCCAACCGCGCTGCCTCGCTGGCTCGATTCCGGGGGAAG
GCACGCGCCGAATGCAGAGAGCTGCCGTGGGGCACAGAAATAGCAGCAGT
AGTGGTGGAAGAAAGGCACCTGTTCTTACCATTTAGCCTAGGAACTTATG
CTTCAGGGGTGAACATGGGGTGCAGGGAGGGATTCTACTATTCGGTGAAA
AGTCGCCAACGCGCATTTTATTTTTCAACAGCAGTTCGTTCTCCAAGAAC
GCGTAAAATGCGTTGAACCTGATTTTAGTGCAAGTCATGCTGACGTGACC
TCTGTTTGTTGTAGATGTTTCTCTTTTTGAATTTTCAAAAGATTTTGCGG
TGTAAGGAAGACCGAGCCCTGTAACTTGTAAGGGAGACCTCGGCCTGATA
AACCCGGCAGCTATTTGGTGAACCCAAGAAGCACTAAGTGTTGTATTTTG
CGACGTGCTGAACGAAGAACGCAAGTACGCGAGGAGCATCGCCGCAGAAC
CGGTACAAAAGAGTTCCACCTTGTTGCTCACAATCGACTCTTACGGTGAT
AGGTACGCTTCTAATTTGAGTCCAACTCGATGATTGACTGGCAGCCTGTT
GTTTTTTGTCGCCAGAATAAATGGGACGAAACGCACACACAGCGCGCGCG
CGCGTGTTGGGCGGGAAATTAACGAACATTCCTGCGAGCGCGACAAAAAC
CCACACACACAACAAGATGAAACAGTAGTAGTTCCCTCGCAAAAAACGTG
GTAATCCTGTCGAAGGCTAGGAGAACATTCTTTGTCATCACGAGATTTTT
TCTTCTGGATGGAACTAGAGCGACAGATGCAGCAGGTTTTCTCTCTGGGC
AAGTTGCTTTGTTTTGCCCTCCAATCAAAGCCAGCTGCGCGGCTGCTTTG
AAGCGTTGACTCTGATCCTACAGCCCACACATTTTTTTTTTCCGGAGGGT
CTTGAGCGTAGAGATCTAGACTGGGTGGAAAACAAGTACGTACACGGATC
GGCTCACAAAAAAAACATATGGTACGTTCGATCGCGGGCTAGCACGATTT
CGTTTGGCTTCAAGTGTCGAGGTAGGCCTTGGGGGGGTAGAAAATATATG
AAAGGACGACCTGTCTTGCTCTGGACGGACGTGAGCGGGATGAGGATTCT
GGAGACTTGCAAGATTTGTGAGGATTCGAATGGCAATCTCCGCCGGCGAA
AACCAGACGAAAGCGCCACACCTAGAACTTACGATTTCTCCCCAAGGCTC
CAGATATCGTCCATTTATCTTTGCCTTGCAAATGACTGAAACACAAAGAC
GGAAAGTGTAGTAATTCAACATAATCCCCCCTGAGTCGATTTAATTTATC
TCAGTAGAGGGTATTCTTTTAGTGTTTTTGACTCTTTTTTATCAAAAGAA
AGTTGAGGAGTGTTGTGTTTCATTCTTCACCGGTCATCAGCAGCGTGCAG
TATTCGCTGCTTTCTTCGTTGATTAGAACCAAGTTCCTCGTTGCCCACGT
ACTCCGGAAGTGATGCTCTCGATTCGGCGGCAGAAACGGAGAAGATCGCA
AGACACTTCTCCGTCGTCGACAGCAGCCAAAATTGCAGGAAAATTCTTGC
GTTCATCCTGTGTAACGACCGCAATAACCACGAAAAACAAAATGAAGCAC
GTCAATACATTATGCCTCGTCATGGACCCCCCTTAAAAATGTAGCTTTTC
AAGCATGCGGAGAGCTTAAAAAAACGGCCGGCTACCCGTGACACACTCGT
GTTACTTGGTCTCCCCAAACCTCTGTGTCCCGTATTTCTCAGCCCGTGCA
ATTTGCTCCAACCGATCTCCTCTGGCACGCACTCTTTCTGCCAACAGGAG
GAAGCCGCTCCTGCGGCGGCCGCACCGATTCCTCCTAAGGCGGAGGCAAT
GCTGGCTCCTCCTGAGGCGGAGGCAGCACCGGCTTCCCCTAAGGCGGAGG
CAGCACCGGCTCCTCCTAAGGCGGAGGCAGCACCGGCTCCTCCTAAGGCG
GAGGCAGCACCGGCTCCTCCTAAGGTGGAGGAAGCACCAGCTCCGTCGGC
AACGGAAGCAGCGCCATCTCCTCCCAAGGCTGTGGCAGCTCCTCCGGCAG
CACCAGCACCCGTGGCAGCACCGCCGCTAAAGAAAAAGAAGAAGCTGAGG
GGGAAGAAGAAGGCGGCTGCTGCGGCGGCGGCGGCGGCCGCGCAGGACGC
TTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1078:13802..16355-

>mRNA_H-canaliculatus_F_contig1078.732.1 ID=mRNA_H-canaliculatus_F_contig1078.732.1|Name=mRNA_H-canaliculatus_F_contig1078.732.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1374bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1078:13802..16355- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGGACCACGATGACCCCTCTCTTCTTCCTAGCCGCCACGGCCCTCCT
ACCCTATGGCTTCGACGCTTTCGTTATTCTGCCGGCGGCGACGTCTACCA
GGGCACGTGGGGGGAACGTCTCTAAGAACATGGCAAATGCGCCGACAGCG
GAGGCAATACAGGAACGCGAGAACGCTCGAGCAGCTCTCTTGGAGTCGGG
CGGCGTGGACGAACTCATGAAAATGCTAACAGAGCTGAGGAACGACGGGA
GCGAGGGTGAAGAAGGTGCTCCTACTGCCGCTGCTGCTCCTGCTGCTGCA
GCTGCTGCCGTCGCTACCTCTCCGTCTGCGAAGATGAGGACCACGATGAC
CCCTCTCTTCTTCCTAGCCGCCACGGCCCTCCTACCCTATGGCTTCGACG
CTTTCGTTATTCTGCCGGCGGCGACGTCTACCAGGGCACGTGGGGGGAAC
GTCTCTAAGAACATGGCAAATGCGCCGACAGCGGAGGCAATACAGGAACG
CGAGAACGCTCGAGCAGCTCTCTTGGAGTCGGGCGGCGTGGACGAACTCA
TGAAAATGCTAACAGAGCTGAGGAACGACGGGAGCGAGGGTGAAGAAGGT
GCTCCTACTGCCGCTGCTGCTCCTGCTGCTGCAGCTGCTGCCGTCGCTAC
CTCTCCGTCTGCGAAGGAAGCCGCTCCTGCGGCGGCCGCACCGATTCCTC
CTAAGGCGGAGGCAATGCTGGCTCCTCCTGAGGCGGAGGCAGCACCGGCT
TCCCCTAAGGCGGAGGCAGCACCGGCTCCTCCTAAGGCGGAGGCAGCACC
GGCTCCTCCTAAGGCGGAGGCAGCACCGGCTCCTCCTAAGGTGGAGGAAG
CACCAGCTCCGTCGGCAACGGAAGCAGCGCCATCTCCTCCCAAGGCTGTG
GCAGCTCCTCCGGCAGCACCAGCACCCGTGGCAGCACCGCCGCTAAAGAA
AAAGAAGAAGCTGAGGGGGAAGAAGAAGGCGGCTGCTGCGGCGGCGGCGG
CGGCCGCGCAGGACGCTTAAGAAGCCGCTCCTGCGGCGGCCGCACCGATT
CCTCCTAAGGCGGAGGCAATGCTGGCTCCTCCTGAGGCGGAGGCAGCACC
GGCTTCCCCTAAGGCGGAGGCAGCACCGGCTCCTCCTAAGGCGGAGGCAG
CACCGGCTCCTCCTAAGGCGGAGGCAGCACCGGCTCCTCCTAAGGTGGAG
GAAGCACCAGCTCCGTCGGCAACGGAAGCAGCGCCATCTCCTCCCAAGGC
TGTGGCAGCTCCTCCGGCAGCACCAGCACCCGTGGCAGCACCGCCGCTAA
AGAAAAAGAAGAAGCTGAGGGGGAAGAAGAAGGCGGCTGCTGCGGCGGCG
GCGGCGGCCGCGCAGGACGCTTAA
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