mRNA_H-canaliculatus_F_contig1075.710.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1075.710.1
Unique NamemRNA_H-canaliculatus_F_contig1075.710.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1075.710.1 vs. uniprot
Match: A0A6H5JU55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU55_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 2.280e-43
Identity = 108/245 (44.08%), Postives = 136/245 (55.51%), Query Frame = 3 
Query:  108 PVGD--WWFVRLESIATPLLRPNAVADVGLAFRCVYMAVHIGEPLPLRRTRGTAWCVEDTVVDACGGTCPVREHGPAQAGRLRGREGMAEVGGRNKALLTPGARATRGDLATTSTPSTTERRTPVEVVGSSGAPSSAGISTGGSGT-RSRCILSELSALRRQSSSACPSSAGSSSYAHRGVHTTLQGLLNMCTAVHYKSNGCPGPLSQTGSCSGRSDHFIFSAECDSCGAIFGRVTTERPDPKSI 833
            PV D  WW VRLES+ +P+L+P   A+VGLAFRC   A+HIGEPLP R + G+AW   D VV     TCPV EHGP+Q+   RGR  +    GR   ++TPGA       A  +TPS+ E                 G  +G  G  RS    S+    RR    + P    S S  H GV  ++ GLLNM  AVH KS GCPGPL      +GRSD+  FSAEC +CGA+FGR+  E+PD K++
Sbjct:  386 PVQDSEWWCVRLESVVSPILKPGVEAEVGLAFRCECDALHIGEPLPTRVSTGSAWTSADPVVKIWRTTCPVVEHGPSQS-LTRGRRRV----GRADPIVTPGA-------ARRTTPSSGEE---------------VGTGSGARGVLRSTPSTSDTGESRRAQEYSRPKPKDSESNNHVGVPVSVSGLLNMLGAVHKKSCGCPGPLINPSLGAGRSDYESFSAECRTCGAVFGRLPVEKPDSKAL 603
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BLAST of mRNA_H-canaliculatus_F_contig1075.710.1 vs. uniprot
Match: A0A6H5J8W1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W1_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.590e-23
Identity = 86/248 (34.68%), Postives = 106/248 (42.74%), Query Frame = 3 
Query:   90 RSLRAAPVGDWWFVRLESIATPLLRPNAVADVGLAFRCVYMAVHIGEPLPLRRTRGTAWCVEDTVVDACGGTCPVREHGPAQAGRLRGREGMAEVGGRNKALLTPGARATRGDLATTSTPSTTERRTPVEVVGSSGAPSSAGISTGGSGTRSRCILSELSALRRQSSSACPSSAGSSSYAHRGVHTTLQGLLNMCTAVHYKSNGCPGPLSQTGSCSGRSDHFIFSAECDSCGAIFGRVTTERPDPKSI 833
            R   +  +GDW +VRLES+A+P L P    +VGLAF C   AVH+GEPLP RR +G  W   ++VV+  G  CPVRE G A   R   R G+                      +  S P      TP+       A S AG   G S   SR                   SAG       G  T   G L+   +   +  GCPGPL        RSD   FSA C  CGAIFG +   +P+ KSI
Sbjct:  315 RCQESVRIGDWEYVRLESLASPFLFPGVAPEVGLAFSCSCGAVHLGEPLPERRKQGVVWSSANSVVEVLGHQCPVRETGYADH-RRASRGGVPAGSPXXXXXXXXXXXXXXRHESDGSAPDGDALDTPI-------ARSRAGPVWGASEDDSR-----------------GGSAG-------GTRTRSGGGLSSRASGDRQDTGCPGPLINAVLSRARSDFEAFSAGCRECGAIFGHIPVSKPNAKSI 530
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1075.710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JU55_9PHAE2.280e-4344.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8W1_9PHAE3.590e-2334.68Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1075contigH-canaliculatus_F_contig1075:2..1193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size920
Cds size819
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1075.710.1prot_H-canaliculatus_F_contig1075.710.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1075 37..1127 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928738.099344-UTR-H-canaliculatus_F_contig1075:1..361622928738.099344-UTR-H-canaliculatus_F_contig1075:1..36Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1075 2..36 +
1696845545.300086-UTR-H-canaliculatus_F_contig1075:1..361696845545.300086-UTR-H-canaliculatus_F_contig1075:1..36Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1075 2..36 +
1622928738.1420524-UTR-H-canaliculatus_F_contig1075:1127..11931622928738.1420524-UTR-H-canaliculatus_F_contig1075:1127..1193Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1075 1128..1193 +
1696845545.3339126-UTR-H-canaliculatus_F_contig1075:1127..11931696845545.3339126-UTR-H-canaliculatus_F_contig1075:1127..1193Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1075 1128..1193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928738.1167028-CDS-H-canaliculatus_F_contig1075:36..5421622928738.1167028-CDS-H-canaliculatus_F_contig1075:36..542Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1075 37..542 +
1696845545.3134375-CDS-H-canaliculatus_F_contig1075:36..5421696845545.3134375-CDS-H-canaliculatus_F_contig1075:36..542Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1075 37..542 +
1622928738.1301546-CDS-H-canaliculatus_F_contig1075:814..11271622928738.1301546-CDS-H-canaliculatus_F_contig1075:814..1127Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1075 815..1127 +
1696845545.3252194-CDS-H-canaliculatus_F_contig1075:814..11271696845545.3252194-CDS-H-canaliculatus_F_contig1075:814..1127Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1075 815..1127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1075.710.1

>prot_H-canaliculatus_F_contig1075.710.1 ID=prot_H-canaliculatus_F_contig1075.710.1|Name=mRNA_H-canaliculatus_F_contig1075.710.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=273bp
MGETGKRGKGESEKKNSERSLRAAPVGDWWFVRLESIATPLLRPNAVADV
GLAFRCVYMAVHIGEPLPLRRTRGTAWCVEDTVVDACGGTCPVREHGPAQ
AGRLRGREGMAEVGGRNKALLTPGARATRGDLATTSTPSTTERRTPVEVV
GSSGAPSSAGISTGGSGTRSRCILSELSALRRQSSSACPSSAGSSSYAHR
GVHTTLQGLLNMCTAVHYKSNGCPGPLSQTGSCSGRSDHFIFSAECDSCG
AIFGRVTTERPDPKSIRRTGRV*
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mRNA from alignment at H-canaliculatus_F_contig1075:2..1193+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1075.710.1 ID=mRNA_H-canaliculatus_F_contig1075.710.1|Name=mRNA_H-canaliculatus_F_contig1075.710.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1192bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1075:2..1193+ (Hapterophycus canaliculatus Oshoro5f female)
TGACAAAGTTTCCCTGTTTCACCCATGTACCGTACATGGGTGAAACAGGA
AAAAGGGGAAAGGGGGAAAGCGAAAAAAAAAACAGTGAACGGAGCTTAAG
GGCGGCTCCCGTTGGAGACTGGTGGTTCGTCCGATTGGAATCCATCGCCA
CGCCTTTGCTTCGGCCCAATGCCGTTGCGGACGTAGGTCTAGCATTCCGT
TGTGTCTATATGGCTGTTCATATCGGCGAGCCGCTACCACTTAGGCGAAC
ACGAGGAACAGCATGGTGTGTTGAGGATACGGTCGTGGACGCTTGTGGGG
GTACATGTCCCGTGCGAGAGCATGGCCCGGCACAGGCCGGGCGCCTACGT
GGCCGGGAAGGAATGGCTGAAGTTGGTGGACGGAACAAGGCTCTTTTGAC
GCCGGGCGCACGGGCTACACGCGGCGACCTTGCCACTACATCCACGCCTT
CCACAACTGAGAGAAGGACGCCCGTGGAAGTGGTCGGGTCGAGTGGGGCT
CCGTCATCTGCGGGTATCTCGACGGGAGGTTCGGGGACGAGGTATGAAAG
GTCACGTTTTTGCTCGTTGTATGGCTCGGGCCCACAGCGAAACTGATCAG
GCGGATACCGCAGAATCGATGGGAGAAGTGTGCGTATTTGGCGACGTGCG
CTGGTTGTGCGATTCTTCTGTGGCTAGTGATGGTTAAGCGGTAGCCTTAG
GGTTTGCTGCTTACCGTCACAGGGGATAACATACTCGGACGTAATACTTA
ACGGCGCATTGTCCTTCTGCTCCACCATCTCCGTCGTCGACGTCCTGTCG
TATCTCGGCCCAGATCCCGATGTATCCTCAGTGAACTATCGGCGCTGCGA
AGGCAGAGTTCGTCCGCGTGCCCGTCATCGGCAGGATCAAGTTCCTACGC
GCACCGGGGCGTCCACACGACCCTCCAGGGACTCCTGAACATGTGCACAG
CGGTGCACTATAAATCAAACGGGTGCCCCGGTCCGTTATCCCAGACAGGA
TCGTGTTCCGGTCGCTCCGATCATTTTATTTTCTCCGCCGAGTGTGATTC
ATGCGGCGCCATTTTTGGTAGGGTTACCACCGAGCGCCCCGATCCCAAGT
CTATACGGCGTACTGGTCGAGTGTAAGAACGGGATGGATAGGCTCAAGGG
AGGACAAGGTCACCTACGTTCGTAGCCCCCGCACTAATTGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1075:2..1193+

>mRNA_H-canaliculatus_F_contig1075.710.1 ID=mRNA_H-canaliculatus_F_contig1075.710.1|Name=mRNA_H-canaliculatus_F_contig1075.710.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1638bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1075:2..1193+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTGAAACAGGAAAAAGGGGAAAGGGGGAAAGCGAAAAAAAAAACAG
TGAACGGAGCTTAAGGGCGGCTCCCGTTGGAGACTGGTGGTTCGTCCGAT
TGGAATCCATCGCCACGCCTTTGCTTCGGCCCAATGCCGTTGCGGACGTA
GGTCTAGCATTCCGTTGTGTCTATATGGCTGTTCATATCGGCGAGCCGCT
ACCACTTAGGCGAACACGAGGAACAGCATGGTGTGTTGAGGATACGGTCG
TGGACGCTTGTGGGGGTACATGTCCCGTGCGAGAGCATGGCCCGGCACAG
GCCGGGCGCCTACGTGGCCGGGAAGGAATGGCTGAAGTTGGTGGACGGAA
CAAGGCTCTTTTGACGCCGGGCGCACGGGCTACACGCGGCGACCTTGCCA
CTACATCCACGCCTTCCACAACTGAGAGAAGGACGCCCGTGGAAGTGGTC
GGGTCGAGTGGGGCTCCGTCATCTGCGGGTATCTCGACGGGAGGTTCGGG
GACGAGATGGGTGAAACAGGAAAAAGGGGAAAGGGGGAAAGCGAAAAAAA
AAACAGTGAACGGAGCTTAAGGGCGGCTCCCGTTGGAGACTGGTGGTTCG
TCCGATTGGAATCCATCGCCACGCCTTTGCTTCGGCCCAATGCCGTTGCG
GACGTAGGTCTAGCATTCCGTTGTGTCTATATGGCTGTTCATATCGGCGA
GCCGCTACCACTTAGGCGAACACGAGGAACAGCATGGTGTGTTGAGGATA
CGGTCGTGGACGCTTGTGGGGGTACATGTCCCGTGCGAGAGCATGGCCCG
GCACAGGCCGGGCGCCTACGTGGCCGGGAAGGAATGGCTGAAGTTGGTGG
ACGGAACAAGGCTCTTTTGACGCCGGGCGCACGGGCTACACGCGGCGACC
TTGCCACTACATCCACGCCTTCCACAACTGAGAGAAGGACGCCCGTGGAA
GTGGTCGGGTCGAGTGGGGCTCCGTCATCTGCGGGTATCTCGACGGGAGG
TTCGGGGACGAGATCCCGATGTATCCTCAGTGAACTATCGGCGCTGCGAA
GGCAGAGTTCGTCCGCGTGCCCGTCATCGGCAGGATCAAGTTCCTACGCG
CACCGGGGCGTCCACACGACCCTCCAGGGACTCCTGAACATGTGCACAGC
GGTGCACTATAAATCAAACGGGTGCCCCGGTCCGTTATCCCAGACAGGAT
CGTGTTCCGGTCGCTCCGATCATTTTATTTTCTCCGCCGAGTGTGATTCA
TGCGGCGCCATTTTTGGTAGGGTTACCACCGAGCGCCCCGATCCCAAGTC
TATACGGCGTACTGGTCGAGTGTAAATCCCGATGTATCCTCAGTGAACTA
TCGGCGCTGCGAAGGCAGAGTTCGTCCGCGTGCCCGTCATCGGCAGGATC
AAGTTCCTACGCGCACCGGGGCGTCCACACGACCCTCCAGGGACTCCTGA
ACATGTGCACAGCGGTGCACTATAAATCAAACGGGTGCCCCGGTCCGTTA
TCCCAGACAGGATCGTGTTCCGGTCGCTCCGATCATTTTATTTTCTCCGC
CGAGTGTGATTCATGCGGCGCCATTTTTGGTAGGGTTACCACCGAGCGCC
CCGATCCCAAGTCTATACGGCGTACTGGTCGAGTGTAA
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