mRNA_H-canaliculatus_F_contig10609.592.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10609.592.1
Unique NamemRNA_H-canaliculatus_F_contig10609.592.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10609.592.1 vs. uniprot
Match: D7FLB0_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB0_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 6.930e-58
Identity = 123/205 (60.00%), Postives = 144/205 (70.24%), Query Frame = 1 
Query:   85 NREKVHERLRLGGTCRFKSHLYHTLLHYKLYLVCKIREHMDKTMVGPEALRQGLWAQQKWDDEKTAIDQLVKRAKVMANMKTNREYWREGTWEKMKAIRMWLYIPLFIVAEQEAKNNRRINVDQLDEVHSSASNGSDGXXXXXXXXXXXXXSRAPCDRPKASAGGRGRARRG---------RYGEEMSSESQEWDTLSDFIVDDD 672
            +++KV ERL LGG CR+KSHLYHTLLHYKLYLVCK+REHMD T VGPE LR+G WA+QKWDDEK AIDQLV +A+ MANMKT +EYWRE TW +MKAIR WLY+PL IV EQEAK++ R  +DQLDE              XXXXXX     R P    +A AG  G+A RG         RY +++SS S E D +SDFIVDDD
Sbjct: 1068 SKQKVRERLGLGGRCRYKSHLYHTLLHYKLYLVCKVREHMDTTGVGPEDLRKGEWAEQKWDDEKLAIDQLVGKAEYMANMKTFKEYWREETWAEMKAIRKWLYVPLRIVYEQEAKHDCRTKLDQLDEXXXXXX--------XXXXXXSGSRGRLPRGSQRAGAGA-GKAVRGXXXXXXXXGRYQDDVSSGSAEPDNMSDFIVDDD 1263
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BLAST of mRNA_H-canaliculatus_F_contig10609.592.1 vs. uniprot
Match: D7G8T8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T8_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.840e-8
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   13 QLWTRSRWDKLLPKGWDSAAATRANREKVHERLRLGGTCRFKSHLYHTLLHYKLYLVCKI 192
            ++W   RWDK LP+ WD   A    +++      LG TC+ KSHL+H+L HYKLYLV K+
Sbjct:   58 KVWDGLRWDKHLPEHWDDPDAAAVAKQEAKATHYLGDTCKHKSHLFHSLTHYKLYLVSKV 117
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BLAST of mRNA_H-canaliculatus_F_contig10609.592.1 vs. uniprot
Match: A0A6H5KKK5_9PHAE (DUF4211 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK5_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.950e-8
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   13 QLWTRSRWDKLLPKGWDSAAATRANREKVHERLRLGGTCRFKSHLYHTLLHYKLYLVCKI 192
            ++W   RWDK LP+ WD   A    +++      LG TC+ KSHL+H+L HYKLYLV K+
Sbjct:  777 RVWDGLRWDKHLPEHWDDPDAAAVAKQEAKATHYLGDTCKHKSHLFHSLTHYKLYLVSKV 836
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10609.592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLB0_ECTSI6.930e-5860.00RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
D7G8T8_ECTSI1.840e-846.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKK5_9PHAE4.950e-846.67DUF4211 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10609contigH-canaliculatus_F_contig10609:167..2295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue5.5e-52
Seed eggNOG ortholog2880.D7FLB0
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0331@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA helicase
Ec32 orthologEc-15_004980.1
Exons5
Model size684
Cds size684
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10609.592.1prot_H-canaliculatus_F_contig10609.592.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10609 167..2295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928716.463465-CDS-H-canaliculatus_F_contig10609:166..2591622928716.463465-CDS-H-canaliculatus_F_contig10609:166..259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10609 167..259 +
1696845536.6343517-CDS-H-canaliculatus_F_contig10609:166..2591696845536.6343517-CDS-H-canaliculatus_F_contig10609:166..259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10609 167..259 +
1622928716.479984-CDS-H-canaliculatus_F_contig10609:557..6191622928716.479984-CDS-H-canaliculatus_F_contig10609:557..619Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10609 558..619 +
1696845536.6468263-CDS-H-canaliculatus_F_contig10609:557..6191696845536.6468263-CDS-H-canaliculatus_F_contig10609:557..619Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10609 558..619 +
1622928716.4952705-CDS-H-canaliculatus_F_contig10609:1196..13321622928716.4952705-CDS-H-canaliculatus_F_contig10609:1196..1332Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10609 1197..1332 +
1696845536.65517-CDS-H-canaliculatus_F_contig10609:1196..13321696845536.65517-CDS-H-canaliculatus_F_contig10609:1196..1332Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10609 1197..1332 +
1622928716.514378-CDS-H-canaliculatus_F_contig10609:1433..15251622928716.514378-CDS-H-canaliculatus_F_contig10609:1433..1525Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10609 1434..1525 +
1696845536.6669757-CDS-H-canaliculatus_F_contig10609:1433..15251696845536.6669757-CDS-H-canaliculatus_F_contig10609:1433..1525Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10609 1434..1525 +
1622928716.5298615-CDS-H-canaliculatus_F_contig10609:1994..22951622928716.5298615-CDS-H-canaliculatus_F_contig10609:1994..2295Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10609 1995..2295 +
1696845536.6828074-CDS-H-canaliculatus_F_contig10609:1994..22951696845536.6828074-CDS-H-canaliculatus_F_contig10609:1994..2295Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10609 1995..2295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10609.592.1

>prot_H-canaliculatus_F_contig10609.592.1 ID=prot_H-canaliculatus_F_contig10609.592.1|Name=mRNA_H-canaliculatus_F_contig10609.592.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=228bp
MLCAQLWTRSRWDKLLPKGWDSAAATRANREKVHERLRLGGTCRFKSHLY
HTLLHYKLYLVCKIREHMDKTMVGPEALRQGLWAQQKWDDEKTAIDQLVK
RAKVMANMKTNREYWREGTWEKMKAIRMWLYIPLFIVAEQEAKNNRRINV
DQLDEVHSSASNGSDGSSSSGGGGGGGSSSRAPCDRPKASAGGRGRARRG
RYGEEMSSESQEWDTLSDFIVDDDVSE*
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mRNA from alignment at H-canaliculatus_F_contig10609:167..2295+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10609.592.1 ID=mRNA_H-canaliculatus_F_contig10609.592.1|Name=mRNA_H-canaliculatus_F_contig10609.592.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2129bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10609:167..2295+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTTGTGCGCAGTTGTGGACGAGATCTAGATGGGACAAGCTTCTCCC
GAAGGGTTGGGACTCGGCTGCTGCTACAAGAGCGAATCGAGAGGTGACGT
GAAAGTGCTGGGAGCATATCAGGCGAACTTGGAGATGTATATCAAATTGG
TCATCCAGGCTTAAAAAGCGGAAGTTCAGGATATTTGCTGGGCAACGGCA
ATCGCCTTGACAACACATCTCACGTTTAGAATCCTCCCGATTCCCGACGC
ACATCCCGGCTCTCTGATCATGCGTGCACTGCACTGGTAGTGAAGAGGCG
AATCCACGACTTGCCGTTGAGGGCTTCCTTCTCGCCTGCCCTATTTTGTT
CTCATCGCTGCGGTTGTCCTTTCTTTTTTTTCGTTTTTCAGAAAGTCCAC
GAGCGTCTGAGGCTGGGGGGAACATGCCGCTTCAAGTCTCACCTCTACCA
CACGTGAGAAAGAAATACCCACTCTCGTTTCTGCCTGGCTCTGCCAAAGT
ATTTGGAGGAAATTCTCGTTGTTTTAAACTCTGCACGGCGCTTGTGTTCT
TTGTGCCACGAGTTCGAATACTTTTCCTGTGTTGTGCTGTTTCATCGTTC
CTTTTGACGGCATCCCGCCGCTGATGCTTTGAAGGCATCTTGCGTGAGAG
ACGTACTTCTTGGTTGCCTGATGGCGTGTTCAGCATGTCGTAGTGTGCAT
GCTGCAAAGCCCGAAGCGACGCGTCGAACCAGGCGAAAGTCTGGCAGCTT
GCAAAATCTATTGAACAGATCCGAGAGACGGATTCGTTTTTTCTTATGCC
TCGACGGCACATGCTCACACTCATCTGCAGTAGGGTGTTGAGATTTCTGT
GAGTGCGAGGACCTCCCGGTACTATGGTGCAGAGTAAAGGTTGTTGTTTA
TGCTTAATATCCACTAGCTCGAACCAAATCCAACCCCTTCCCGTCAATTA
ATCCACGCCCCGTCCCCACTGATGCATGCTGTGATGTTTCCTCGTTGTTC
CATGCCCGATCCGGCACTTCAAAATCCCAGTCTGCTGCACTACAAGTTGT
ACCTGGTGTGCAAAATTCGGGAGCACATGGACAAGACTATGGTTGGCCCG
GAAGCGCTTCGGCAGGGCCTGTGGGCACAGCAGAAGTGGGACGATGAGAA
GACCGCAATCGATCAGGTGAGGCTAAGCCTCCTCCAGCTAGCTCATCTAG
CTACACATGTGATCAGTCTTCCTACCTTCACTCACATCCGTCCTCATACC
CTTGTGTGTTTCTACAGTTGGTGAAGCGCGCGAAGGTCATGGCGAATATG
AAGACCAACCGAGAGTATTGGCGAGAAGGGACGTGGGAGAAGATGAAAGC
CATTCGAATGTGAGCTTGAGCGCGCGTGCGGTTGATGCTCCGTTTGCTGC
AGGAAGTATGAGGACTTCGCAGGGCTGGTATCCGCATCTCGTATGATAGG
ACAATTGTTTTTCAGGCTTCGGTGCACGCCGGTGGAGACGCTAGGTTGTC
AAACGAAGCTTGAGCAAAATACTTTGCCTTCCACGGATTGCGTCTTTTTC
AGTATTTCCAAAAGTCGTAACGGAAAGGAGAGGCTCCTGAACCACGGTTG
CTGCATGTGCGTCTCGGTATTCCGAAGGACGTGCACCGATTGGAAGAGCC
CGATCACGAGTACGAATCAACTGCATGGATGTGTGTGGAAATAGCCATTT
CCGCGTGTTGGCCGTGTTCTTAATGGTGGTGGTGGTGCCATACTTCCTCA
GGAGTTGTAACAGGGCGGATTCAGTTGGAGGCAGGCATGTTGATTTTGTG
CCCGATCGGGATACCTATTTGACCGCAGGTGGCTATACATCCCGCTGTTC
ATTGTTGCTGAACAAGAGGCCAAGAACAACCGTCGCATTAATGTGGACCA
ACTAGACGAAGTGCACTCGAGTGCAAGCAATGGCAGCGATGGCAGCAGCA
GCAGCGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCCGAGCACCGTGCGAC
AGGCCGAAGGCATCAGCGGGGGGTCGGGGTCGCGCAAGACGCGGGCGATA
CGGGGAGGAGATGAGCAGCGAGAGCCAAGAGTGGGATACCTTGAGTGACT
TCATCGTCGATGATGACGTTAGTGAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10609:167..2295+

>mRNA_H-canaliculatus_F_contig10609.592.1 ID=mRNA_H-canaliculatus_F_contig10609.592.1|Name=mRNA_H-canaliculatus_F_contig10609.592.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1368bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10609:167..2295+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTTGTGCGCAGTTGTGGACGAGATCTAGATGGGACAAGCTTCTCCC
GAAGGGTTGGGACTCGGCTGCTGCTACAAGAGCGAATCGAGAGATGCTTT
GTGCGCAGTTGTGGACGAGATCTAGATGGGACAAGCTTCTCCCGAAGGGT
TGGGACTCGGCTGCTGCTACAAGAGCGAATCGAGAGAAAGTCCACGAGCG
TCTGAGGCTGGGGGGAACATGCCGCTTCAAGTCTCACCTCTACCACACAA
AGTCCACGAGCGTCTGAGGCTGGGGGGAACATGCCGCTTCAAGTCTCACC
TCTACCACACTCTGCTGCACTACAAGTTGTACCTGGTGTGCAAAATTCGG
GAGCACATGGACAAGACTATGGTTGGCCCGGAAGCGCTTCGGCAGGGCCT
GTGGGCACAGCAGAAGTGGGACGATGAGAAGACCGCAATCGATCAGTCTG
CTGCACTACAAGTTGTACCTGGTGTGCAAAATTCGGGAGCACATGGACAA
GACTATGGTTGGCCCGGAAGCGCTTCGGCAGGGCCTGTGGGCACAGCAGA
AGTGGGACGATGAGAAGACCGCAATCGATCAGTTGGTGAAGCGCGCGAAG
GTCATGGCGAATATGAAGACCAACCGAGAGTATTGGCGAGAAGGGACGTG
GGAGAAGATGAAAGCCATTCGAATTTGGTGAAGCGCGCGAAGGTCATGGC
GAATATGAAGACCAACCGAGAGTATTGGCGAGAAGGGACGTGGGAGAAGA
TGAAAGCCATTCGAATGTGGCTATACATCCCGCTGTTCATTGTTGCTGAA
CAAGAGGCCAAGAACAACCGTCGCATTAATGTGGACCAACTAGACGAAGT
GCACTCGAGTGCAAGCAATGGCAGCGATGGCAGCAGCAGCAGCGGCGGCG
GCGGCGGCGGCGGCAGCAGCAGCCGAGCACCGTGCGACAGGCCGAAGGCA
TCAGCGGGGGGTCGGGGTCGCGCAAGACGCGGGCGATACGGGGAGGAGAT
GAGCAGCGAGAGCCAAGAGTGGGATACCTTGAGTGACTTCATCGTCGATG
ATGACGTTAGTGAGTGAGTGGCTATACATCCCGCTGTTCATTGTTGCTGA
ACAAGAGGCCAAGAACAACCGTCGCATTAATGTGGACCAACTAGACGAAG
TGCACTCGAGTGCAAGCAATGGCAGCGATGGCAGCAGCAGCAGCGGCGGC
GGCGGCGGCGGCGGCAGCAGCAGCCGAGCACCGTGCGACAGGCCGAAGGC
ATCAGCGGGGGGTCGGGGTCGCGCAAGACGCGGGCGATACGGGGAGGAGA
TGAGCAGCGAGAGCCAAGAGTGGGATACCTTGAGTGACTTCATCGTCGAT
GATGACGTTAGTGAGTGA
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