mRNA_H-canaliculatus_F_contig10589.567.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10589.567.1
Unique NamemRNA_H-canaliculatus_F_contig10589.567.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10589.567.1 vs. uniprot
Match: D8LIV0_ECTSI (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV0_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 4.850e-80
Identity = 133/174 (76.44%), Postives = 145/174 (83.33%), Query Frame = 3 
Query:  399 IRQSGSVFEFPSRQAVVSLGTLPLRSLYAVVDAESGRVGLAQKVD--DAPLREAGNNASCQAAAVCVGMESFKESENACDGPSCSSYYLTTLNEESMACESTGIMTILAWVFGIFFGVTEMTGHFLRAYYGSTGVGLRGHQHHQGWEFHTGRLIEACLAKVTRTAGRTP--HER 908
            IRQSG VFE PS Q VVSLGTLPLRSLYAVVD E GRVGLAQK D  D+ L  AGNN SC AAAVCVGM+ F+ES NAC+ PSCS YYLT L+ E+M C+STGIMTIL WVFG+FFG+TEM GHFLRAYYG TGVGLRGH+HHQGWEFHTGRLIEACL K TR+AG +P  HER
Sbjct:  319 IRQSGWVFELPSMQPVVSLGTLPLRSLYAVVDTEIGRVGLAQKGDVGDSALGNAGNNTSCNAAAVCVGMQRFQESYNACEDPSCSYYYLTNLDNETMTCKSTGIMTILVWVFGMFFGITEMAGHFLRAYYGGTGVGLRGHEHHQGWEFHTGRLIEACLGKATRSAGLSPPHHER 492
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BLAST of mRNA_H-canaliculatus_F_contig10589.567.1 vs. uniprot
Match: A0A6H5KZM9_9PHAE (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM9_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 5.820e-75
Identity = 133/181 (73.48%), Postives = 146/181 (80.66%), Query Frame = 3 
Query:  399 IRQSGSVFEFPSRQAVVSLGTLPLRSLYAVVDAESGRVGLAQKVD--DAPLREAGNNASCQAAAVCVGMESFKESENACDGPSCSSYYLTTL-------NEESMACESTGIMTILAWVFGIFFGVTEMTGHFLRAYYGSTGVGLRGHQHHQGWEFHTGRLIEACLAKVTRTAGRTP--HER 908
            IRQSG +FE PS Q VVSLGTLPLRSLYAVVD E GRVGLAQK D  D+ L  AGNN SC AAAVCVGM+ F+ES NAC+ PSCSSYYLT L       ++E+M C+STGIMTIL WVFGIFFG+TEM GHFLRAYYG TGVGLRGH+HHQGWEFHTGRLIEACL K TR+AG +   HER
Sbjct:  622 IRQSGWIFELPSMQPVVSLGTLPLRSLYAVVDTEIGRVGLAQKGDVGDSALGNAGNNTSCNAAAVCVGMQRFRESYNACEDPSCSSYYLTALVAAGANLDDETMTCKSTGIMTILVWVFGIFFGITEMAGHFLRAYYGGTGVGLRGHEHHQGWEFHTGRLIEACLGKATRSAGLSQLHHER 802
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10589.567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIV0_ECTSI4.850e-8076.44Peptidase A1 domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KZM9_9PHAE5.820e-7573.48Peptidase A1 domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10589contigH-canaliculatus_F_contig10589:95..3745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.9
Seed ortholog evalue2.1e-41
Seed eggNOG ortholog2880.D8LIV0
EggNOG OGs2DZGB@1,2S70F@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size1107
Cds size321
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928712.771351-UTR-H-canaliculatus_F_contig10589:94..6601622928712.771351-UTR-H-canaliculatus_F_contig10589:94..660Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10589 95..660 +
1696845534.8014312-UTR-H-canaliculatus_F_contig10589:94..6601696845534.8014312-UTR-H-canaliculatus_F_contig10589:94..660Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10589 95..660 +
1622928712.784029-UTR-H-canaliculatus_F_contig10589:1464..14941622928712.784029-UTR-H-canaliculatus_F_contig10589:1464..1494Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10589 1465..1494 +
1696845534.8297617-UTR-H-canaliculatus_F_contig10589:1464..14941696845534.8297617-UTR-H-canaliculatus_F_contig10589:1464..1494Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10589 1465..1494 +
1622928712.8433325-UTR-H-canaliculatus_F_contig10589:3555..37451622928712.8433325-UTR-H-canaliculatus_F_contig10589:3555..3745Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10589 3556..3745 +
1696845534.8738396-UTR-H-canaliculatus_F_contig10589:3555..37451696845534.8738396-UTR-H-canaliculatus_F_contig10589:3555..3745Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10589 3556..3745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928712.7941403-CDS-H-canaliculatus_F_contig10589:1494..15601622928712.7941403-CDS-H-canaliculatus_F_contig10589:1494..1560Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10589 1495..1560 +
1696845534.8388846-CDS-H-canaliculatus_F_contig10589:1494..15601696845534.8388846-CDS-H-canaliculatus_F_contig10589:1494..1560Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10589 1495..1560 +
1622928712.8084795-CDS-H-canaliculatus_F_contig10589:1802..19121622928712.8084795-CDS-H-canaliculatus_F_contig10589:1802..1912Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10589 1803..1912 +
1696845534.8472807-CDS-H-canaliculatus_F_contig10589:1802..19121696845534.8472807-CDS-H-canaliculatus_F_contig10589:1802..1912Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10589 1803..1912 +
1622928712.8191426-CDS-H-canaliculatus_F_contig10589:2785..28851622928712.8191426-CDS-H-canaliculatus_F_contig10589:2785..2885Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10589 2786..2885 +
1696845534.8561287-CDS-H-canaliculatus_F_contig10589:2785..28851696845534.8561287-CDS-H-canaliculatus_F_contig10589:2785..2885Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10589 2786..2885 +
1622928712.8335125-CDS-H-canaliculatus_F_contig10589:3510..35551622928712.8335125-CDS-H-canaliculatus_F_contig10589:3510..3555Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10589 3511..3555 +
1696845534.865265-CDS-H-canaliculatus_F_contig10589:3510..35551696845534.865265-CDS-H-canaliculatus_F_contig10589:3510..3555Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10589 3511..3555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10589.567.1prot_H-canaliculatus_F_contig10589.567.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10589 1495..3555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10589.567.1

>prot_H-canaliculatus_F_contig10589.567.1 ID=prot_H-canaliculatus_F_contig10589.567.1|Name=mRNA_H-canaliculatus_F_contig10589.567.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=107bp
MESFKESENACDGPSCSSYYLTTLNEESMACESTGIMTILAWVFGIFFGV
TEMTGHFLRAYYGSTGVGLRGHQHHQGWEFHTGRLIEACLAKVTRTAGRT
PHEREN*
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mRNA from alignment at H-canaliculatus_F_contig10589:95..3745+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10589.567.1 ID=mRNA_H-canaliculatus_F_contig10589.567.1|Name=mRNA_H-canaliculatus_F_contig10589.567.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3651bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10589:95..3745+ (Hapterophycus canaliculatus Oshoro5f female)
TACCACCTTTCAGGCTCCCCAAACGTCTGTCGAGAACGATTCCCTGTGGT
CACGGTCGCCCTCGATCTGTCTTGCTTCTTTCGTTGTCGAGATGCCCGGC
CAAGCTATGAAAGTGGTGGTCCAGGAACCTCGAGACAACACGATCGAGCC
CACTTTCGTGCAACAGTGCATCAGGCCGCCAAGCCTTCTCGTCGCAACAG
ACCAAATAACCAAAGGAGGCGAATCAATCGGTCCAGACTGCGAAAGTCAC
GTAACGCCAGCTCGCCGACGAAAAATCCCCCTCTCACGTCGAATTCGCCG
ACCAAGTCAAGCGAGCGACCATCCAGCCGACGGGAAGGCGGGACACAATC
GAGTCGCCCAATCCCTCTCGAACCAACCCTACCCAAACCGCGACCGAAAT
CCGGCAGTCCGGGTCGGTCTTCGAGTTCCCTTCGAGGCAAGCCGTGGTAT
CCCTCGGCACCCTCCCCCTGCGGTCGCTGTACGCCGTCGTGGACGCGGAG
TCCGGTCGGGTGGGGCTGGCGCAGAAGGTCGACGACGCGCCATTGAGAGA
GGCCGGAAACAACGCGGTGAGGGAGAGGGGTCGAAGGGGGGTTCAACGTG
CGGTCCTTTAACCTTATTTTTATTTTTATTTTTTCCGGTCGTTTTCGTGT
CTGGCGTTTGATGTTCGTCCGTTCCTTTTTTCCCTTTTTTTTTTTCCCCA
TGGTAAATGTGTGAGAAGTGGGGGGGGAATTTTGCCTTTTTTTGGCAGAG
ATGTGGCGAATCGTTTGGCGCCCCTGTATTTATGCGAGCGCGTTTCTGGC
GGCCCCACGGTACACGAAGATTGGTCGGGGGGGGGGCGACGTATCTCTGC
CGGGCTATTTCGGCTCTCATGTCGGGCTTTGGTCGGCCACCGCAAACCCT
TGAAAAAGACCTCGTGCAAAAGAGAGGGTGATGAACGCCGCGAATCATGT
GCTGCGAAAAATCGCCGCGCTGTCCTTCCTCCTAGGTCAGCGTCCCGGGC
TTGACTCCTCATGTCGAGGCGCGGCAACAGGGTTGTGCCTTGCTCGTTGA
GCGCATCCTTGCAGTGGAGCAGGACTCGAATCGACACTACAACTAGCCTG
ATGCGGATGCAAGATGGTCCTTCTAGAAAATGGTCATGTCCGGCGCAGGT
TCGGGCGTCAGGCGGATGCTCAGGCGTAGGCTTAGGGTTGAGGCCTCTTC
GCCTATCCGTTCTCCTCCACCTCTCTCCTCTTCCATCTCTCCCCCCTCTA
CGCAATCCTCGCGCCCTTTTCCTCTTCGTCCCTCCCCCGCCCTCTTACCC
CCGTGCTTCCCCGCTTCCTTGCTGCCTGCCGGGCTTGGCTTCGTGGAACC
GTCCGGATCGGATGCCGCAGAGCTGTCAGGCCGCCGCCGTGTGCGTAGGA
ATGGAGTCGTTCAAGGAGTCCGAAAACGCGTGCGATGGTCCTTCGTGCTC
CTCTTACTACCTCACGGTGCGTCGTCGTCGCCGTCGCCGTCGTCGTCGTC
GTCGTCATCCCGGGTTGTTGTCAATGTTGTTGTTGCTGTTGCCGTCGTCG
TTCTCCAAGACAACGCTCATGTAGAGATCGCCACGGCCTTGTGACTCCGT
TCGTCGTGGGCTACTTCCTGTCCTGATTGGTCCACACGCCTACACCGCTC
CCTCCCGCTGGTTCTTCTTCGGGTGCTGTCGTGCTGCTGTGCTGCTGTGC
TGTTGCAGACCCTCAACGAGGAAAGCATGGCCTGTGAATCGACCGGGATC
ATGACGATCCTGGCGTGGGTCTTCGGCATCTTTTTCGGAGTGACTGAGAT
GACCGGCCACTTTCTTCGGTAAGCACGGCTGTGATTGACATCGATGTTGG
TGTTGGTGTTGGTGTTGGTGTTGAGTGTTGGGTGTTGGGTGTTGATAGTG
GTGTTTACCGTAGTTTGATGTTGATTTTGCTGTTGGTTTTGGCTTCCATT
TTGTAGAAACGCTTTTCGTGGTATTGCTGATACTGGGGCAGGTGTTGATC
TGTTGTTGGTCTTGGCATCAGTGGAGCCATTGATGTTGACTCTGGTGTCG
ACTTTGTTGCTGCTGCTGTTGTTAATATCAGCGGTGTTTGCTTACTTTGG
TGGTATGCATAGTTTTCCGTGTAACAACCGGTGTTGGTTTGCGGTACGTC
ACGCGTTGTCGACCCTCGACAAGTTCCAGCGCTAGCACGGTTCAAGCGAA
GACCCATCCTCGTGCCGGCCGGGCCCCAAGTCCCCTTTGCCGTCAGCGAA
GGTCGCGCGATGTGCCCGAAGTCCCAATCTTGCCTGCGTCGCCGTGCATG
CACGTGCGCGATACTGTACATGCTGGGCACATTTGGCTGTGGATCTAGTG
AGCGATCAACGCCGCAGAGCTTTTGCCTCCCTCTGCGTCTCGAAGTAACC
TTGAGCAGCCCCTGTCTCCTCACCAGGGTGGCGTCATCTTGACACGGCTC
CTACGGGGGGGTGTAAACGTGCGGTGGATTTGTCGCAAGGACATGCCACC
TGTGAACGGTGATGACGTGTGATACCACGCGGAAGCCCACCACCCTCGCT
TGATGCTCTTTTTTGACAATTTTACGGCCGCCTGCGCCCGGTACTTTTTT
TTTTTTTAAAAAAAACTTTTTTGACCGACCCTGAGTGAACTCGAGTGACG
CAAAATACAATCGCGTTGAAACGGTGCAACCACGGGTGCAGGGCTTACTA
CGGCTCGACCGGCGTCGGCCTTCGGGGGCACCAGCATCACCAGGGGTGGG
AGTTCCACACAGGCCGGCTGATCGAGGCGTGCCTAGCGAAGGCAAGTGGG
GGGAAATACGGTATATTTTTAGTCTGGCGGGGGTGCCGTGCTGTCGCGGA
GTGGAAATATGGAGTCCTACGCGGCGAGCATGGCCCCTTTTCAGACACGG
GGATGGCCATGCTTGGGTCGTACACATGTCGCGTTGCACTACCCTTGTAT
GCAAGCCTGCATCACACGAAATAGCTCTTTCCCACTGCGTTTCCTGCTCT
TTTTTTTTCTTGAGGGGGGGGGAGGTTGTCTGGGCAGCCTGTGGTTTGGG
CGGGTCTGTGTGAGTGGCCGGCCCGATGATAACACACCCATGGCGGCCTC
GGACCTTTGGTCCTACTGCTGCACCACCTGTCTCTCTCGGCATACGTCTC
GCTCCCCTCCCCTCCCCTCCGCATGCTCGCACCATCTACCTCCCTCCCTC
CCTCTGCCCGTACGCGAATAGCTGACTCCACTTCCTTCCACCTGAACCTG
TCCCGCGTCCACCTCCGTTGCCCTTGCTTCCCTTTCCCTTGTCCCCCCAC
GCCCCTGACAACCTCGACCCCTTTCAACTCCGACCGCTGCCCCATACACA
CACATGTGTTTTTAATCTTCTTGTCCCCTGTTAATCGAGTGCCCTCCCGC
CCCCGCCCCCCACCAGGTTACACGAACAGCCGGTCGCACTCCTCACGAAC
GAGAGAACTGAGATGACGTGGTGGTGCTCACGATCGTGATGAGACGGGGC
GGCGGTGGGCGGCGGTGGGCGGCGGTGGTGTGGGTGATGGGGCTATCTAG
CGTGCGGCGAGCACGGACGACGTGCGGAAGGCGCTGGGAACCCAGACCTA
GGGATCCTGTGACTGTCGTCTCTCATTTCAATTGACAGCAGTGGATCTGT
G
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10589:95..3745+

>mRNA_H-canaliculatus_F_contig10589.567.1 ID=mRNA_H-canaliculatus_F_contig10589.567.1|Name=mRNA_H-canaliculatus_F_contig10589.567.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10589:95..3745+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGTCGTTCAAGGAGTCCGAAAACGCGTGCGATGGTCCTTCGTGCTC
CTCTTACTACCTCACGATGGAGTCGTTCAAGGAGTCCGAAAACGCGTGCG
ATGGTCCTTCGTGCTCCTCTTACTACCTCACGACCCTCAACGAGGAAAGC
ATGGCCTGTGAATCGACCGGGATCATGACGATCCTGGCGTGGGTCTTCGG
CATCTTTTTCGGAGTGACTGAGATGACCGGCCACTTTCTTCGACCCTCAA
CGAGGAAAGCATGGCCTGTGAATCGACCGGGATCATGACGATCCTGGCGT
GGGTCTTCGGCATCTTTTTCGGAGTGACTGAGATGACCGGCCACTTTCTT
CGGGCTTACTACGGCTCGACCGGCGTCGGCCTTCGGGGGCACCAGCATCA
CCAGGGGTGGGAGTTCCACACAGGCCGGCTGATCGAGGCGTGCCTAGCGA
AGGGCTTACTACGGCTCGACCGGCGTCGGCCTTCGGGGGCACCAGCATCA
CCAGGGGTGGGAGTTCCACACAGGCCGGCTGATCGAGGCGTGCCTAGCGA
AGGTTACACGAACAGCCGGTCGCACTCCTCACGAACGAGAGAACTGAGTT
ACACGAACAGCCGGTCGCACTCCTCACGAACGAGAGAACTGA
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