mRNA_H-canaliculatus_M_contigs887.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs887.1.1
Unique NamemRNA_H-canaliculatus_M_contigs887.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs887.1.1 vs.
Match: UCH (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM5_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 5.700e-67
Identity = 113/214 (52.80%), Postives = 144/214 (67.29%), Query Frame = 1
Query:    1 PSIVQWRRGMQNKNNHCFLLSAIQFIRALPTCHSRLLNFSGAASPTAPKGKELTWAVSRTLRALQDDGTSDMGKKEPLVPHELIKTFFTVL-GALFVDGDQDDMANTVGAILDQIHDETYNKESDSSLVDSARGSCTSHYFCRKCKVRQEASDGSTHLTYPKTETLTTVEEWTRIPPELVLSVARFERTSHGHHKKRKDKLAVDLSLNNAVTFG 639
            P I+   RGM N+ N CFLLSAIQ IRALP CH+ +LNF  A     P+GKELTWAVSRT+RALQ+ G    G   PL P ELI TFF V  G +  DG+QDD+ANT+G ILD++H ET + ES SSLVDSARG   +  FC+ C    E +  +   ++ K E + + E+W+ IPPEL++SV RF+RT  G + K KDK+AVDL L+  V+FG
Sbjct:   34 PRIIPNHRGMINRENDCFLLSAIQMIRALPICHAAILNFPDATELAPPRGKELTWAVSRTMRALQESG----GTASPLNPTELIGTFFNVFSGNMVQDGEQDDLANTIGTILDKVHSETVDAESQSSLVDSARGQMETRTFCQMCHA--EKNKRTPRTSFSKNEVMLSKEKWSVIPPELIVSVGRFQRTLCGGYIKAKDKVAVDLLLDKTVSFG 241          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs887.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UCH5.700e-6752.80domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs887contigH-canaliculatus_M_contigs887:1790..8814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size639
Hectar predicted targeting categoryother localisation
Exons7
Cds size612
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs887.1.1prot_H-canaliculatus_M_contigs887.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs887 1790..8787 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854177.6853118-CDS-H-canaliculatus_M_contigs887:1789..18621696854177.6853118-CDS-H-canaliculatus_M_contigs887:1789..1862Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs887 1790..1862 -
1696854177.6966894-CDS-H-canaliculatus_M_contigs887:2242..23461696854177.6966894-CDS-H-canaliculatus_M_contigs887:2242..2346Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs887 2243..2346 -
1696854177.7070875-CDS-H-canaliculatus_M_contigs887:5193..52891696854177.7070875-CDS-H-canaliculatus_M_contigs887:5193..5289Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs887 5194..5289 -
1696854177.7177775-CDS-H-canaliculatus_M_contigs887:6081..61651696854177.7177775-CDS-H-canaliculatus_M_contigs887:6081..6165Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs887 6082..6165 -
1696854177.7283099-CDS-H-canaliculatus_M_contigs887:6860..69561696854177.7283099-CDS-H-canaliculatus_M_contigs887:6860..6956Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs887 6861..6956 -
1696854177.740218-CDS-H-canaliculatus_M_contigs887:7332..73701696854177.740218-CDS-H-canaliculatus_M_contigs887:7332..7370Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs887 7333..7370 -
1696854177.7589345-CDS-H-canaliculatus_M_contigs887:8666..87871696854177.7589345-CDS-H-canaliculatus_M_contigs887:8666..8787Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs887 8667..8787 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854177.7718728-UTR-H-canaliculatus_M_contigs887:8787..88141696854177.7718728-UTR-H-canaliculatus_M_contigs887:8787..8814Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs887 8788..8814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs887.1.1

>prot_H-canaliculatus_M_contigs887.1.1 ID=prot_H-canaliculatus_M_contigs887.1.1|Name=mRNA_H-canaliculatus_M_contigs887.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=204bp
MQNKNNHCFLLSAIQFIRALPTCHSRLLNFSGAASPTAPKGKELTWAVSR
TLRALQDDGTSDMGKKEPLVPHELIKTFFTVLGALFVDGDQDDMANTVGA
ILDQIHDETYNKESDSSLVDSARGSCTSHYFCRKCKVRQEASDGSTHLTY
PKTETLTTVEEWTRIPPELVLSVARFERTSHGHHKKRKDKLAVDLSLNNA
VTFG
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mRNA from alignment at H-canaliculatus_M_contigs887:1790..8814-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs887.1.1 ID=mRNA_H-canaliculatus_M_contigs887.1.1|Name=mRNA_H-canaliculatus_M_contigs887.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=7025bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs887:1790..8814- (Hapterophycus canaliculatus Oshoro7m male)
CCCTCCATCGTCCAATGGCGCAGGGGGATGCAGAACAAGAACAACCACTG CTTCCTGCTGTCAGCGATCCAGTTCATTAGAGCGTTGCCGACCTGCCACA GCAGGCTACTTAACTTTTCCGGCGCCGCATCTCCCACTGCCCCCAAGGGT GAGACACTTCCGGTGCCGAACAGTACGTCATCACGCTTGTCACGGGGGTG TTCGTGGTCGATACTTCCTCGCGCCTGTGTGAGGTCGCTGCCATCTCGCA CTCTGATAATTCATGTCTTGGCGAATCGTGCATGTCTGTGACGCCGGGGT CGAAATGCCTCCAGTATGGCCTCAAACGAGCGAGCTGGCTCTACTACCAC TTTACAAGCCCCAAGGCACGCAGCACTCGGCAATATTAAGATCGAGCAAT TTCAGCAGTTTCCTGTACAAGTATCATTCTTGTCTGAATAGGAAAACGAG TCAACAACAAGAAATGAGCGCCCTCCTCTGAGACAAATTATCGCGACTCA GCGGGGTTGTGTTGAATTGCTTACAATGAGGGTGAAGTGTGACGGGAAAA CGTTCCATGCGTGCCGGATGAGACATGTTGCGGGTGATACACGCATGAGG CGCCTTGTGACTCTTCCTGTGATGAGGTGATGAGTGAGCGTTTGTTGGCC CCGTGGTAAGTGATCCACACGTACGTCTCGGTAGCAGGCTAGTGGCGGAG TTGAAGGAGTAGATGGCACCCACACGCAGAAGCGATCAGCCTGCAGACGT CTAGCCTTGGTTTCCGTGCAAGTCGTACAGCCGTTGATGCAAAATATTCG AACCTGTACACACCTGAAAGCACACGCACGGAGTTTGGGGAGGAGGAGGT CTTGTTGAATTAGCAGATGTAGAGAGAGACAGGTTGCACAGGTATCGAGA GCCTTCCACAAAGCCTCAACTCTCTAGCTGAGAGAGCTCGTACGGCAGAA CGGCGGGATCCAAAGCGGGCTGCCCCGCACTTGAATGGGAGGGTGTGCGG CGAGCTTATGCGAAATGGCCAGCTATATTTCTCTTAACTCTTGTCCTGCG TATGTACTGTAGGTGAACTTGAGGCCACCATGGTGTATCTTGGAAACCAT TGAAATGGTATATTCGCGCTTGGTTTCTCGCCTGTCGAACGAGGGTGGGA AAGTGTGAAATGTGGAAGATCTTGTGATAAGCACAGATCTTTGCGCACAG ATTTTGAACCGCGGAGGATTTTTGCGTGTTTTGCTCGGCTTTGGCAGAAA GCCCCGGAAATGCTTCCGTCCGCCACGACACTTTTCGGGGAAGGCAACTT GATGTGTGTCGACTTCACCTGACCTGGAAACTGGTTTCTGTCAGTTCTGG GGAACTCGGAGGATGAAGTACCGCGGAATCGGCAGCAAAATGTCATGACC TCATCTACCTTCACCGTCCCCCCTACTTTCCTTGCCCACTACAGGGAAAG AGCTGACCTGGGCGGTGTCTAGGACGCTGCGGGTGAGAGAAAGCACGAGA AATAGCAATATTGAATGCGCACCCTTTTCTTATTACTCGTCTTTACAGTT GCGTTTCGACTGCGTTTCTGCGCCAATGCGGAGGCAGTGACGCCAGTTGC TGCATCGCTGAAATAGCGAGCCATTGGTGGCTGCGGTTAGAAACGCTCAT TGCGCAGGTACTCATAGAAGGAAGGTGCACTTAATGCCGTAACAATGCCG GAAGGTAGGGTGCACAAAGGAGCTTGCTCCGAAGACTAGATGGCAGCGCC ACCCAGTAGGCCGCTACGCTGAGGCATGCATGTGGTGGCTGTGAGATTGC TCAACTGAAGGACTCCTGTGCCGTAATCCCGCACTGCTCCGTGGCTCGCC TCCATCAGGCTCTGCAAGACGACGGGACGTCCGACATGGGCAAGAAAGAA CCGCTGGTGCCGCACGAGCTTATCAAGACGTTCTTCACGGTGTTGGGAGC ATTAGTGAGTGGGTTCGAGGGGTGAAAGAGACACATACCTTGGCACGAAA AACTGTTGCAGACTGTACAAGTACCCTTTTCGTGTGGCTGGGTTGGTATC GCCTCTATCAAGACGGACAAGGCGTGGCGGGAGACCGCGGAAAGCAGCAA AATTACAAGACTCGACACAGATGCAGTGCACCTAGCGGTTACCGAACGAG ATTGCGCCTGCAACAGAGCAATAATGCGGTTACCCAAAGAGGTTGATTCT GCTTAAGCAAAATGACGGAAACACACGACGCATGTCTCCGATCCTCCCGC TTGCGGCTCATCCTGTTTCCTTGACCTGAAGCAAACTTGCTCAAACTTGT CGGAGCACATGGCAAGCAGAACATAAACCATGCATCAGAAGCCAGTAGTC CGGACTACTTTACTGATGCGTTCTGGCAAGAGTGCGGACGCAGCCGAGCC CAGACCGTCCGAAACGCTCCCGCAATTCCAGCTGACACGAGTGTCGCGCA AGGGGCATCTCACGGGACCGCTTGATGGGGTACCTCCATTCCCGACTTGC GTCCCGCTACGCAATCCAACGCTCTACATACTTCGTATTTGCCTTGGTCC GTTTCGTTTGCTATTGCGTGCAGTGCGCTCACCCTTGTTGCTGTGTTTGC TGCTATTTCGTCGCTCTCGATACCGCTGTTGTTGTTGGTGCTGCTGCAGT TCGTCGATGGGGACCAGGACGACATGGCGAATACGGTCGGTGCAATCCTC GACCAGATCCACGACGAGACTTACAACAAAGAGGTGCGTTCCATGGAAAT AGATACAGCTCCGAGAGCGACGACATTGAACAAGACTAACTTAGGTTGAT TCTCCGGCTACGAGTGCGACTGTAGCAGTAAGGTGACATCGCTCTGCTAT TCTGGCGGTTGCACTGCAATCGTGTTATAGATCCCGGCTGCAGTATACGG AAAAACCGTTCTTCACCACAACTTGACCTTTCCCGGGCCAACACGGACGG CGACAACACTAGGACAGTACAAGCTTGAGGTTTGTGTCGTCACGTCGCCA AAGACGTGCGAGATTGAAAAATCAGGTTGCCGAACCCCAGCACCTAAACG TCCGAAGGGAAACGTTAGAAACGCTTTCCTTGGTCAAGGCACAAAGTCGT TTTCGTTTGCCAAGGACAAAGGCACACTTTCATCCGAACTTGAACCTCTC TCCCAGTCGTGTTGCGGTAGGGACGTTTCGCTCTGCCTCCAGTAATCTCC CCGGGTTTGCGGCCATCTTGACTCTTGCCAGTGTTAGCGTTGGACCTGAG ACTGCCGCATCGTCGATATTATCCACGAGGGTAGGCGCATGGTGCAGACT CCCCTTTGGAAGCCTGCCGTGATGAATGATGGCGGTGTGTGGTGCTAAGT GTTCCGGGACCTGCGCTGTTGGCGCCCGCTGTGCTGGTCTCGACGTGGTA CCATGCCGTCTCCTCCCACATGTCAACCCACACATCACCTTCTCGTGCCC GTCCGACGCCGCATCTCGGTGGCTTCTGGGGGCTCCCAACTGCACGATGT TGCCTGATGGTGATAACGACAATAGTCCGACTCGTCACTGGTAGACTCCG CCCGCGGCAGCTGCACGTCGCACTACTTTTGCCGCAAGTGCAAGGTGAGA CAAGAGGCTTCGGACGGTAGCGTTGCCGTTGCCGTTGCCGTTGCTGCTGT TTCTGGTGGTGCTATTGTCGTCGTCGATGCCGTCCATGCTGCTGCTGCTG CCGCTGGTTTCGTTGTTGTTGGCGTTCAATCGTTGCCCAAATGTTTGGTG CTGTACTTACAGCTTACTGCGCCTTCGTCCATAATCGCCGATCCTGCCCA GAACATGAGCTGTCATCAGAAGATTCGTCCTCAACCTCGTAGTTTCGAAG TTCTGGTGTGAGGGGTCGGGCATACTTGACCCGTAGCACATGGATCGACT AGGCCAGTCCGGGGTGCTCATCGCGCGTTGAGCGGCGATGAGCACCTGCT GCTCCGTTTGGCGCCTCGACCATTGAAGAGTGTTGTATACTGCAGAGTGT GGCTGCAGTACCATTGAACATGTAGGCTTCGCTTCTACGCGATTGCACTC GTCTTTGTACGGACTCAACCGACCCGACCCTTGTATTTGCGGTTCCGAAC CATCTTCATCCTCAGGGGTCCTCGGACCCTATCACCACGTCCAAGTGGGT GTTCTATCTTATGCTTCCGCCCGGAACCCCCCCAGCGACAGGATGGGACG TCCCTCACCTTCTGAAGCACGTGAGCAGCATCTGGTAGACCCACGCACGT ACACACTGCGGGGGCGATTTTGAAGCCAAGTGTGAAGCAAAACGGAGGGA TCAACAAATGACGGTCCTTCAAGACGGCAAGGCGTTGTCTGTTGTTGAAC TCGCTGCGGCGAGAGGTTGATGAGGCTGACAGAAAAGATAGAAGCCTAGA GGTTTGAAGCAGGAGCTCACGAACCTCGCCCTCCGGAACACGAACGATTT CCAGCGATGTAATCATCCGGGCAAAGCATTATATACTTTACAGTGTATGT CAAGACGGAATGTGTTTTCTGAAGTAGCGTGCTGCAGTGTCTGCATGAGG ACGGGCAGTCATTTCGAACACTGGTATTGCTCGGACGTTCTCTTTCGGTG CTTTCTCAGGGCACTCTACCAAAACGCTGCTCTTACCTGTGCGACTGTGA CGTAGTGAGACTGTCGCGCAGCGGCCATCCATTTGTATGAAGGAGCTTGT GCACCACGTGGGATGTTGTGCGGAGTACATCCGTCCATGCTAAGGACCCT TGACTGTGGCTCTCTCCACTGGCAGAGATAGCGGCGGCGGCGGCTGCTGC CATGCGGCCCTCTCCAGCTGAAGTCGAACACTAGAGAGTGTTGTTGTCTC GGCGCCGTTCTTCTGCCGCTCAACACCTTAGTCGGATGACCGACTATGCC AACGATCACGACCGGTGAAACATTGGGGTCCATCCTTAAGAGTCCGTCGA AACACGCCTCCTGTCCTCCCTGCACCCTGCAGTGAATATGGCTTTCCTTC CGCCTCGCCGTTGCCCTATGTGGGTTCCATTCCTCCTTCGCCCGACCCTT CGTGCCCGTCCACGCACCCATGTTCTTGTACGCTAAACGGCGCTTCCCGA CTCGACTTCGCGTGGCGAGTCAGACTCTTGGGGGAAGGACCGAAGTCCTC GACAAACCATGCAGCGCTTGCCAGGTGCGAATCGCAAGTTTCGGAGGTCA ACATCAGCCGTGTCGGCTGTTCTCTTTAGTCACTGTTGGAACCAGTCACT GTTGGAACCAACGTGTGGGGGTGCTGGGTGTACATCACCGGTTGTCTTCC TTGAGGTGAAACGTGCCTCAACGACAGGAAAAGTCGAGGACAAAAGGAGT CGTTCGGCAACGTAGGCGTGCCTAGCACCGTAAGCAAACGCTGCTTGCTT TGCCACCGTCGATCTGCACAAACGAGAAGCGTCGACCCATTCGCTCATAC GTCGGCCTTCCTCAATGAGGATATTCAAGGTTGCCAACAGGAGGCTTCAG GCGACTTTGATCGACTAAACAGGCATACGCACGCATATCCGGCCCAGATC GCAGCCGTCCTTCTGCTAAACTAATCGTAGGGAAGCAAGCATACGCAAAC GAAGGTCTATCTTACTTATCCGCACTGGTGGCCCACCGTAACATCTGCTA CGAGCTGACTACTTGAATCATGTCGCTTTTACCGTGCTCTGATTGGCCGG GGCGGGCTGTCCCTCGTGCTGTACCTTCTGCTCATTCCTTCAGGAGGAAC GCCTCGACAGGGAGATGAAGCTGGCGGGGAGGACGACTGAAGCGGAGCGA AAGGAGGTACGCATCGTGAGCGTTCGTGGAGATGACGAAAGCCTCCGTAT TGGTGTACGGTCGATGGTCGAAATGCTTCTTGGAGACAATCAACGTCGGA ATCGATGTCGGGGTGGACGGATGCGTCGAGCGGTAGATGCCCACGCCTAT AAACAGAGAGCGAAGGCATTTGCACGACATTGTATTGGCGCCAGCTCACT AGATCTCCGCCTGAAAGAGTGAACGGTGTCGATGGCTGAAAAAATGAATA TGTCGTTTGCCGAGGAAGGCAGAAGCAAGAATTATCTTGTGGCGATCCGA AAGCCCGCATGCTCATGTCTGTGGTACAAGCGTACGTAAGGAGCGGGGTT GAAGAAGATGGGGCAGGTTTGTCTCTCATTCCCCCAAGCTTCATTAAACG CGTGCTGATCAGCGCGCATCCTTCCTTGCTGAAGCGAGACACAGCGTGAA CATCATGGCCGCAAAGTTTCGGAATATCTTGGGCTCTACGAGCGCACCTG AATAAGGTTCAAGCAACCCTAAGCGGAGAGCGTATCCCTCCTCTGAAGGC GTAGCCGCACCTGTGACCTTAGCCTCGACGCCAGCTTTGGCTGGCGTCTT TCGCCGGTCCTCAGACATACACCTTGTCGTACCCCGGCGATGTCCGACCG TCGCTCGGCCAGATCAAGACGCATCTCACGTACCCCAAGACGGAGACGCT CACGACGGTGGAAGAATGGACGCGAATCCCGCCTGAGCTTGTGCTGAGTG TGGCCCGGTTCGAGAGGACCTCGTAAGTGGGAGTACCGTAGGAGATCAAC CACGTCAGTCACGTTCGTTATCACAGCAAACACCCAGATCTACAGCTGGT TGCATGACCTGTGGCGGGCTATTCGACCCAAACACCAGGAGACAGCGTGC ACTAGACAAGGTAGTTGCTGGCGGGGGGATGTACAACAGGATCGGCGGAC CTCATTTTCGCCACCCGTGGAGCTTCTCTTGCAGGAGCAACACGGTTGGT CTGCATGTAGGAATACAAGGTTTGTTGTTGCTTCCTCTTGCAAGCTACTT GCACCGCGTATGACCAGGCAGCATTGTAATAGATACGCCCCTCTCGTACG TTGTAGCAACGCTGCATCTCTGCGTCTGCTGTGGTTGTTTTGTCAACGCC AGGCACGGCCACCACAAGAAGAGGAAAGACAAGCTTGCGGTCGACCTGTC TCTCAACAACGCGGTGACATTCGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs887:1790..8814-

>mRNA_H-canaliculatus_M_contigs887.1.1 ID=mRNA_H-canaliculatus_M_contigs887.1.1|Name=mRNA_H-canaliculatus_M_contigs887.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=612bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs887:1790..8814- (Hapterophycus canaliculatus Oshoro7m male)
ATGCAGAACAAGAACAACCACTGCTTCCTGCTGTCAGCGATCCAGTTCAT
TAGAGCGTTGCCGACCTGCCACAGCAGGCTACTTAACTTTTCCGGCGCCG
CATCTCCCACTGCCCCCAAGGGGAAAGAGCTGACCTGGGCGGTGTCTAGG
ACGCTGCGGGCTCTGCAAGACGACGGGACGTCCGACATGGGCAAGAAAGA
ACCGCTGGTGCCGCACGAGCTTATCAAGACGTTCTTCACGGTGTTGGGAG
CATTATTCGTCGATGGGGACCAGGACGACATGGCGAATACGGTCGGTGCA
ATCCTCGACCAGATCCACGACGAGACTTACAACAAAGAGTCCGACTCGTC
ACTGGTAGACTCCGCCCGCGGCAGCTGCACGTCGCACTACTTTTGCCGCA
AGTGCAAGGTGAGACAAGAGGCTTCGGACGGTAGCACGCATCTCACGTAC
CCCAAGACGGAGACGCTCACGACGGTGGAAGAATGGACGCGAATCCCGCC
TGAGCTTGTGCTGAGTGTGGCCCGGTTCGAGAGGACCTCGCACGGCCACC
ACAAGAAGAGGAAAGACAAGCTTGCGGTCGACCTGTCTCTCAACAACGCG
GTGACATTCGGA
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