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Homology
BLAST of mRNA_H-canaliculatus_M_contigs887.1.1 vs.
Match: UCH (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM5_ECTSI) HSP 1 Score: 215 bits (547), Expect = 5.700e-67 Identity = 113/214 (52.80%), Postives = 144/214 (67.29%), Query Frame = 1
Query: 1 PSIVQWRRGMQNKNNHCFLLSAIQFIRALPTCHSRLLNFSGAASPTAPKGKELTWAVSRTLRALQDDGTSDMGKKEPLVPHELIKTFFTVL-GALFVDGDQDDMANTVGAILDQIHDETYNKESDSSLVDSARGSCTSHYFCRKCKVRQEASDGSTHLTYPKTETLTTVEEWTRIPPELVLSVARFERTSHGHHKKRKDKLAVDLSLNNAVTFG 639
P I+ RGM N+ N CFLLSAIQ IRALP CH+ +LNF A P+GKELTWAVSRT+RALQ+ G G PL P ELI TFF V G + DG+QDD+ANT+G ILD++H ET + ES SSLVDSARG + FC+ C E + + ++ K E + + E+W+ IPPEL++SV RF+RT G + K KDK+AVDL L+ V+FG
Sbjct: 34 PRIIPNHRGMINRENDCFLLSAIQMIRALPICHAAILNFPDATELAPPRGKELTWAVSRTMRALQESG----GTASPLNPTELIGTFFNVFSGNMVQDGEQDDLANTIGTILDKVHSETVDAESQSSLVDSARGQMETRTFCQMCHA--EKNKRTPRTSFSKNEVMLSKEKWSVIPPELIVSVGRFQRTLCGGYIKAKDKVAVDLLLDKTVSFG 241
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Model size | 639 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Cds size | 612 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696854177.6853118-CDS-H-canaliculatus_M_contigs887:1789..1862 | 1696854177.6853118-CDS-H-canaliculatus_M_contigs887:1789..1862 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs887 1790..1862 - |
| 1696854177.6966894-CDS-H-canaliculatus_M_contigs887:2242..2346 | 1696854177.6966894-CDS-H-canaliculatus_M_contigs887:2242..2346 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs887 2243..2346 - |
| 1696854177.7070875-CDS-H-canaliculatus_M_contigs887:5193..5289 | 1696854177.7070875-CDS-H-canaliculatus_M_contigs887:5193..5289 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs887 5194..5289 - |
| 1696854177.7177775-CDS-H-canaliculatus_M_contigs887:6081..6165 | 1696854177.7177775-CDS-H-canaliculatus_M_contigs887:6081..6165 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs887 6082..6165 - |
| 1696854177.7283099-CDS-H-canaliculatus_M_contigs887:6860..6956 | 1696854177.7283099-CDS-H-canaliculatus_M_contigs887:6860..6956 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs887 6861..6956 - |
| 1696854177.740218-CDS-H-canaliculatus_M_contigs887:7332..7370 | 1696854177.740218-CDS-H-canaliculatus_M_contigs887:7332..7370 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs887 7333..7370 - |
| 1696854177.7589345-CDS-H-canaliculatus_M_contigs887:8666..8787 | 1696854177.7589345-CDS-H-canaliculatus_M_contigs887:8666..8787 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs887 8667..8787 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696854177.7718728-UTR-H-canaliculatus_M_contigs887:8787..8814 | 1696854177.7718728-UTR-H-canaliculatus_M_contigs887:8787..8814 | Hapterophycus canaliculatus Oshoro7m male | UTR | H-canaliculatus_M_contigs887 8788..8814 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs887.1.1 >prot_H-canaliculatus_M_contigs887.1.1 ID=prot_H-canaliculatus_M_contigs887.1.1|Name=mRNA_H-canaliculatus_M_contigs887.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=204bp
MQNKNNHCFLLSAIQFIRALPTCHSRLLNFSGAASPTAPKGKELTWAVSR TLRALQDDGTSDMGKKEPLVPHELIKTFFTVLGALFVDGDQDDMANTVGA ILDQIHDETYNKESDSSLVDSARGSCTSHYFCRKCKVRQEASDGSTHLTY PKTETLTTVEEWTRIPPELVLSVARFERTSHGHHKKRKDKLAVDLSLNNA VTFG back to topmRNA from alignment at H-canaliculatus_M_contigs887:1790..8814- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_M_contigs887.1.1 ID=mRNA_H-canaliculatus_M_contigs887.1.1|Name=mRNA_H-canaliculatus_M_contigs887.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=7025bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs887:1790..8814- (Hapterophycus canaliculatus Oshoro7m male) CCCTCCATCGTCCAATGGCGCAGGGGGATGCAGAACAAGAACAACCACTG
CTTCCTGCTGTCAGCGATCCAGTTCATTAGAGCGTTGCCGACCTGCCACA
GCAGGCTACTTAACTTTTCCGGCGCCGCATCTCCCACTGCCCCCAAGGGT
GAGACACTTCCGGTGCCGAACAGTACGTCATCACGCTTGTCACGGGGGTG
TTCGTGGTCGATACTTCCTCGCGCCTGTGTGAGGTCGCTGCCATCTCGCA
CTCTGATAATTCATGTCTTGGCGAATCGTGCATGTCTGTGACGCCGGGGT
CGAAATGCCTCCAGTATGGCCTCAAACGAGCGAGCTGGCTCTACTACCAC
TTTACAAGCCCCAAGGCACGCAGCACTCGGCAATATTAAGATCGAGCAAT
TTCAGCAGTTTCCTGTACAAGTATCATTCTTGTCTGAATAGGAAAACGAG
TCAACAACAAGAAATGAGCGCCCTCCTCTGAGACAAATTATCGCGACTCA
GCGGGGTTGTGTTGAATTGCTTACAATGAGGGTGAAGTGTGACGGGAAAA
CGTTCCATGCGTGCCGGATGAGACATGTTGCGGGTGATACACGCATGAGG
CGCCTTGTGACTCTTCCTGTGATGAGGTGATGAGTGAGCGTTTGTTGGCC
CCGTGGTAAGTGATCCACACGTACGTCTCGGTAGCAGGCTAGTGGCGGAG
TTGAAGGAGTAGATGGCACCCACACGCAGAAGCGATCAGCCTGCAGACGT
CTAGCCTTGGTTTCCGTGCAAGTCGTACAGCCGTTGATGCAAAATATTCG
AACCTGTACACACCTGAAAGCACACGCACGGAGTTTGGGGAGGAGGAGGT
CTTGTTGAATTAGCAGATGTAGAGAGAGACAGGTTGCACAGGTATCGAGA
GCCTTCCACAAAGCCTCAACTCTCTAGCTGAGAGAGCTCGTACGGCAGAA
CGGCGGGATCCAAAGCGGGCTGCCCCGCACTTGAATGGGAGGGTGTGCGG
CGAGCTTATGCGAAATGGCCAGCTATATTTCTCTTAACTCTTGTCCTGCG
TATGTACTGTAGGTGAACTTGAGGCCACCATGGTGTATCTTGGAAACCAT
TGAAATGGTATATTCGCGCTTGGTTTCTCGCCTGTCGAACGAGGGTGGGA
AAGTGTGAAATGTGGAAGATCTTGTGATAAGCACAGATCTTTGCGCACAG
ATTTTGAACCGCGGAGGATTTTTGCGTGTTTTGCTCGGCTTTGGCAGAAA
GCCCCGGAAATGCTTCCGTCCGCCACGACACTTTTCGGGGAAGGCAACTT
GATGTGTGTCGACTTCACCTGACCTGGAAACTGGTTTCTGTCAGTTCTGG
GGAACTCGGAGGATGAAGTACCGCGGAATCGGCAGCAAAATGTCATGACC
TCATCTACCTTCACCGTCCCCCCTACTTTCCTTGCCCACTACAGGGAAAG
AGCTGACCTGGGCGGTGTCTAGGACGCTGCGGGTGAGAGAAAGCACGAGA
AATAGCAATATTGAATGCGCACCCTTTTCTTATTACTCGTCTTTACAGTT
GCGTTTCGACTGCGTTTCTGCGCCAATGCGGAGGCAGTGACGCCAGTTGC
TGCATCGCTGAAATAGCGAGCCATTGGTGGCTGCGGTTAGAAACGCTCAT
TGCGCAGGTACTCATAGAAGGAAGGTGCACTTAATGCCGTAACAATGCCG
GAAGGTAGGGTGCACAAAGGAGCTTGCTCCGAAGACTAGATGGCAGCGCC
ACCCAGTAGGCCGCTACGCTGAGGCATGCATGTGGTGGCTGTGAGATTGC
TCAACTGAAGGACTCCTGTGCCGTAATCCCGCACTGCTCCGTGGCTCGCC
TCCATCAGGCTCTGCAAGACGACGGGACGTCCGACATGGGCAAGAAAGAA
CCGCTGGTGCCGCACGAGCTTATCAAGACGTTCTTCACGGTGTTGGGAGC
ATTAGTGAGTGGGTTCGAGGGGTGAAAGAGACACATACCTTGGCACGAAA
AACTGTTGCAGACTGTACAAGTACCCTTTTCGTGTGGCTGGGTTGGTATC
GCCTCTATCAAGACGGACAAGGCGTGGCGGGAGACCGCGGAAAGCAGCAA
AATTACAAGACTCGACACAGATGCAGTGCACCTAGCGGTTACCGAACGAG
ATTGCGCCTGCAACAGAGCAATAATGCGGTTACCCAAAGAGGTTGATTCT
GCTTAAGCAAAATGACGGAAACACACGACGCATGTCTCCGATCCTCCCGC
TTGCGGCTCATCCTGTTTCCTTGACCTGAAGCAAACTTGCTCAAACTTGT
CGGAGCACATGGCAAGCAGAACATAAACCATGCATCAGAAGCCAGTAGTC
CGGACTACTTTACTGATGCGTTCTGGCAAGAGTGCGGACGCAGCCGAGCC
CAGACCGTCCGAAACGCTCCCGCAATTCCAGCTGACACGAGTGTCGCGCA
AGGGGCATCTCACGGGACCGCTTGATGGGGTACCTCCATTCCCGACTTGC
GTCCCGCTACGCAATCCAACGCTCTACATACTTCGTATTTGCCTTGGTCC
GTTTCGTTTGCTATTGCGTGCAGTGCGCTCACCCTTGTTGCTGTGTTTGC
TGCTATTTCGTCGCTCTCGATACCGCTGTTGTTGTTGGTGCTGCTGCAGT
TCGTCGATGGGGACCAGGACGACATGGCGAATACGGTCGGTGCAATCCTC
GACCAGATCCACGACGAGACTTACAACAAAGAGGTGCGTTCCATGGAAAT
AGATACAGCTCCGAGAGCGACGACATTGAACAAGACTAACTTAGGTTGAT
TCTCCGGCTACGAGTGCGACTGTAGCAGTAAGGTGACATCGCTCTGCTAT
TCTGGCGGTTGCACTGCAATCGTGTTATAGATCCCGGCTGCAGTATACGG
AAAAACCGTTCTTCACCACAACTTGACCTTTCCCGGGCCAACACGGACGG
CGACAACACTAGGACAGTACAAGCTTGAGGTTTGTGTCGTCACGTCGCCA
AAGACGTGCGAGATTGAAAAATCAGGTTGCCGAACCCCAGCACCTAAACG
TCCGAAGGGAAACGTTAGAAACGCTTTCCTTGGTCAAGGCACAAAGTCGT
TTTCGTTTGCCAAGGACAAAGGCACACTTTCATCCGAACTTGAACCTCTC
TCCCAGTCGTGTTGCGGTAGGGACGTTTCGCTCTGCCTCCAGTAATCTCC
CCGGGTTTGCGGCCATCTTGACTCTTGCCAGTGTTAGCGTTGGACCTGAG
ACTGCCGCATCGTCGATATTATCCACGAGGGTAGGCGCATGGTGCAGACT
CCCCTTTGGAAGCCTGCCGTGATGAATGATGGCGGTGTGTGGTGCTAAGT
GTTCCGGGACCTGCGCTGTTGGCGCCCGCTGTGCTGGTCTCGACGTGGTA
CCATGCCGTCTCCTCCCACATGTCAACCCACACATCACCTTCTCGTGCCC
GTCCGACGCCGCATCTCGGTGGCTTCTGGGGGCTCCCAACTGCACGATGT
TGCCTGATGGTGATAACGACAATAGTCCGACTCGTCACTGGTAGACTCCG
CCCGCGGCAGCTGCACGTCGCACTACTTTTGCCGCAAGTGCAAGGTGAGA
CAAGAGGCTTCGGACGGTAGCGTTGCCGTTGCCGTTGCCGTTGCTGCTGT
TTCTGGTGGTGCTATTGTCGTCGTCGATGCCGTCCATGCTGCTGCTGCTG
CCGCTGGTTTCGTTGTTGTTGGCGTTCAATCGTTGCCCAAATGTTTGGTG
CTGTACTTACAGCTTACTGCGCCTTCGTCCATAATCGCCGATCCTGCCCA
GAACATGAGCTGTCATCAGAAGATTCGTCCTCAACCTCGTAGTTTCGAAG
TTCTGGTGTGAGGGGTCGGGCATACTTGACCCGTAGCACATGGATCGACT
AGGCCAGTCCGGGGTGCTCATCGCGCGTTGAGCGGCGATGAGCACCTGCT
GCTCCGTTTGGCGCCTCGACCATTGAAGAGTGTTGTATACTGCAGAGTGT
GGCTGCAGTACCATTGAACATGTAGGCTTCGCTTCTACGCGATTGCACTC
GTCTTTGTACGGACTCAACCGACCCGACCCTTGTATTTGCGGTTCCGAAC
CATCTTCATCCTCAGGGGTCCTCGGACCCTATCACCACGTCCAAGTGGGT
GTTCTATCTTATGCTTCCGCCCGGAACCCCCCCAGCGACAGGATGGGACG
TCCCTCACCTTCTGAAGCACGTGAGCAGCATCTGGTAGACCCACGCACGT
ACACACTGCGGGGGCGATTTTGAAGCCAAGTGTGAAGCAAAACGGAGGGA
TCAACAAATGACGGTCCTTCAAGACGGCAAGGCGTTGTCTGTTGTTGAAC
TCGCTGCGGCGAGAGGTTGATGAGGCTGACAGAAAAGATAGAAGCCTAGA
GGTTTGAAGCAGGAGCTCACGAACCTCGCCCTCCGGAACACGAACGATTT
CCAGCGATGTAATCATCCGGGCAAAGCATTATATACTTTACAGTGTATGT
CAAGACGGAATGTGTTTTCTGAAGTAGCGTGCTGCAGTGTCTGCATGAGG
ACGGGCAGTCATTTCGAACACTGGTATTGCTCGGACGTTCTCTTTCGGTG
CTTTCTCAGGGCACTCTACCAAAACGCTGCTCTTACCTGTGCGACTGTGA
CGTAGTGAGACTGTCGCGCAGCGGCCATCCATTTGTATGAAGGAGCTTGT
GCACCACGTGGGATGTTGTGCGGAGTACATCCGTCCATGCTAAGGACCCT
TGACTGTGGCTCTCTCCACTGGCAGAGATAGCGGCGGCGGCGGCTGCTGC
CATGCGGCCCTCTCCAGCTGAAGTCGAACACTAGAGAGTGTTGTTGTCTC
GGCGCCGTTCTTCTGCCGCTCAACACCTTAGTCGGATGACCGACTATGCC
AACGATCACGACCGGTGAAACATTGGGGTCCATCCTTAAGAGTCCGTCGA
AACACGCCTCCTGTCCTCCCTGCACCCTGCAGTGAATATGGCTTTCCTTC
CGCCTCGCCGTTGCCCTATGTGGGTTCCATTCCTCCTTCGCCCGACCCTT
CGTGCCCGTCCACGCACCCATGTTCTTGTACGCTAAACGGCGCTTCCCGA
CTCGACTTCGCGTGGCGAGTCAGACTCTTGGGGGAAGGACCGAAGTCCTC
GACAAACCATGCAGCGCTTGCCAGGTGCGAATCGCAAGTTTCGGAGGTCA
ACATCAGCCGTGTCGGCTGTTCTCTTTAGTCACTGTTGGAACCAGTCACT
GTTGGAACCAACGTGTGGGGGTGCTGGGTGTACATCACCGGTTGTCTTCC
TTGAGGTGAAACGTGCCTCAACGACAGGAAAAGTCGAGGACAAAAGGAGT
CGTTCGGCAACGTAGGCGTGCCTAGCACCGTAAGCAAACGCTGCTTGCTT
TGCCACCGTCGATCTGCACAAACGAGAAGCGTCGACCCATTCGCTCATAC
GTCGGCCTTCCTCAATGAGGATATTCAAGGTTGCCAACAGGAGGCTTCAG
GCGACTTTGATCGACTAAACAGGCATACGCACGCATATCCGGCCCAGATC
GCAGCCGTCCTTCTGCTAAACTAATCGTAGGGAAGCAAGCATACGCAAAC
GAAGGTCTATCTTACTTATCCGCACTGGTGGCCCACCGTAACATCTGCTA
CGAGCTGACTACTTGAATCATGTCGCTTTTACCGTGCTCTGATTGGCCGG
GGCGGGCTGTCCCTCGTGCTGTACCTTCTGCTCATTCCTTCAGGAGGAAC
GCCTCGACAGGGAGATGAAGCTGGCGGGGAGGACGACTGAAGCGGAGCGA
AAGGAGGTACGCATCGTGAGCGTTCGTGGAGATGACGAAAGCCTCCGTAT
TGGTGTACGGTCGATGGTCGAAATGCTTCTTGGAGACAATCAACGTCGGA
ATCGATGTCGGGGTGGACGGATGCGTCGAGCGGTAGATGCCCACGCCTAT
AAACAGAGAGCGAAGGCATTTGCACGACATTGTATTGGCGCCAGCTCACT
AGATCTCCGCCTGAAAGAGTGAACGGTGTCGATGGCTGAAAAAATGAATA
TGTCGTTTGCCGAGGAAGGCAGAAGCAAGAATTATCTTGTGGCGATCCGA
AAGCCCGCATGCTCATGTCTGTGGTACAAGCGTACGTAAGGAGCGGGGTT
GAAGAAGATGGGGCAGGTTTGTCTCTCATTCCCCCAAGCTTCATTAAACG
CGTGCTGATCAGCGCGCATCCTTCCTTGCTGAAGCGAGACACAGCGTGAA
CATCATGGCCGCAAAGTTTCGGAATATCTTGGGCTCTACGAGCGCACCTG
AATAAGGTTCAAGCAACCCTAAGCGGAGAGCGTATCCCTCCTCTGAAGGC
GTAGCCGCACCTGTGACCTTAGCCTCGACGCCAGCTTTGGCTGGCGTCTT
TCGCCGGTCCTCAGACATACACCTTGTCGTACCCCGGCGATGTCCGACCG
TCGCTCGGCCAGATCAAGACGCATCTCACGTACCCCAAGACGGAGACGCT
CACGACGGTGGAAGAATGGACGCGAATCCCGCCTGAGCTTGTGCTGAGTG
TGGCCCGGTTCGAGAGGACCTCGTAAGTGGGAGTACCGTAGGAGATCAAC
CACGTCAGTCACGTTCGTTATCACAGCAAACACCCAGATCTACAGCTGGT
TGCATGACCTGTGGCGGGCTATTCGACCCAAACACCAGGAGACAGCGTGC
ACTAGACAAGGTAGTTGCTGGCGGGGGGATGTACAACAGGATCGGCGGAC
CTCATTTTCGCCACCCGTGGAGCTTCTCTTGCAGGAGCAACACGGTTGGT
CTGCATGTAGGAATACAAGGTTTGTTGTTGCTTCCTCTTGCAAGCTACTT
GCACCGCGTATGACCAGGCAGCATTGTAATAGATACGCCCCTCTCGTACG
TTGTAGCAACGCTGCATCTCTGCGTCTGCTGTGGTTGTTTTGTCAACGCC
AGGCACGGCCACCACAAGAAGAGGAAAGACAAGCTTGCGGTCGACCTGTC
TCTCAACAACGCGGTGACATTCGGA back to topCoding sequence (CDS) from alignment at H-canaliculatus_M_contigs887:1790..8814- >mRNA_H-canaliculatus_M_contigs887.1.1 ID=mRNA_H-canaliculatus_M_contigs887.1.1|Name=mRNA_H-canaliculatus_M_contigs887.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=612bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs887:1790..8814- (Hapterophycus canaliculatus Oshoro7m male) ATGCAGAACAAGAACAACCACTGCTTCCTGCTGTCAGCGATCCAGTTCAT TAGAGCGTTGCCGACCTGCCACAGCAGGCTACTTAACTTTTCCGGCGCCG CATCTCCCACTGCCCCCAAGGGGAAAGAGCTGACCTGGGCGGTGTCTAGG ACGCTGCGGGCTCTGCAAGACGACGGGACGTCCGACATGGGCAAGAAAGA ACCGCTGGTGCCGCACGAGCTTATCAAGACGTTCTTCACGGTGTTGGGAG CATTATTCGTCGATGGGGACCAGGACGACATGGCGAATACGGTCGGTGCA ATCCTCGACCAGATCCACGACGAGACTTACAACAAAGAGTCCGACTCGTC ACTGGTAGACTCCGCCCGCGGCAGCTGCACGTCGCACTACTTTTGCCGCA AGTGCAAGGTGAGACAAGAGGCTTCGGACGGTAGCACGCATCTCACGTAC CCCAAGACGGAGACGCTCACGACGGTGGAAGAATGGACGCGAATCCCGCC TGAGCTTGTGCTGAGTGTGGCCCGGTTCGAGAGGACCTCGCACGGCCACC ACAAGAAGAGGAAAGACAAGCTTGCGGTCGACCTGTCTCTCAACAACGCG GTGACATTCGGA back to top
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