mRNA_H-canaliculatus_M_contigs782.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs782.1.1
Unique NamemRNA_H-canaliculatus_M_contigs782.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs782.1.1 vs.
Match: Similar (to fetal globin inducing factor n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVG8_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 3.750e-28
Identity = 56/95 (58.95%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 FFNNTALHRAASMGFTVITGYLLESGAEVDAVASDGWTPLHLACRWGRVGAIKALVNAGADVNKATKDGRFPSDLLKIHMSPRDRNEVLKLLGES 285
            FFNNTALHR+ASMGFT ITGYLLESGAEVDAVA+DGWTPL                               P++LLKI MSPRDRNE LKLLG S
Sbjct:   23 FFNNTALHRSASMGFTAITGYLLESGAEVDAVANDGWTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPAELLKIEMSPRDRNETLKLLGSS 117          
BLAST of mRNA_H-canaliculatus_M_contigs782.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0PRQ8_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 1.090e-9
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   19 LHRAASMGFTVITGYLLESGAEVDAVAS-DGWTPLHLACRWGRVGAIKALVNAGADVNKATKDGRFP 216
            L+ AA  G+  +   L+E GA VD+V    GWT LH+A   GRVGA +AL+ AGADVNK  ++ R P
Sbjct:  311 LYFAAMDGYDDVVAALIEGGANVDSVKEYSGWTALHVAAEEGRVGAARALLAAGADVNKVDQEDRTP 377          
BLAST of mRNA_H-canaliculatus_M_contigs782.1.1 vs.
Match: Protein (phosphatase 1 regulatory subunit 12A n=3 Tax=Hydra vulgaris TaxID=6087 RepID=T2MJI9_HYDVU)

HSP 1 Score: 63.5 bits (153), Expect = 1.120e-9
Identity = 32/72 (44.44%), Postives = 42/72 (58.33%), Query Frame = 1
Query:   13 TALHRAASMGFTVITGYLLE-SGAEVDAVASDGWTPLHLACRWGRVGAIKALVNAGADVNKATKDGRFPSDL 225
            TALH AAS G+T +   +L+  GA+V+    DGWTPLH A  WG   A + L + GAD      +G+ P DL
Sbjct:  212 TALHVAASKGYTKVINIILKIPGADVNVKDCDGWTPLHAAVHWGSKSACELLTDFGADFEIMNNNGQTPCDL 283          
BLAST of mRNA_H-canaliculatus_M_contigs782.1.1 vs.
Match: ankyrin (repeat domain-containing protein 16-like n=1 Tax=Chelonus insularis TaxID=460826 RepID=UPI00158AC005)

HSP 1 Score: 61.6 bits (148), Expect = 4.200e-9
Identity = 37/92 (40.22%), Postives = 53/92 (57.61%), Query Frame = 1
Query:   19 LHRAASMGFTVITGYLLESGAEVDAVASDGWTPLHLACRWG---RVGAIKALVNAGADVNKATKDGRFPSDLLKIHMSPRDRN-EVLKLLGE 282
            LH AA    + I  YL+++GAEVDA+    WTPL LAC       + +IK L+ AGA+++   KDG  P     +H++ R  N  ++KLL E
Sbjct:   87 LHEAAQFAKSDIVEYLIDNGAEVDAIKRADWTPLMLACTKDGPDAIESIKKLIKAGANLSLRNKDGWMP-----LHIASRVGNANIIKLLLE 173          
BLAST of mRNA_H-canaliculatus_M_contigs782.1.1 vs.
Match: ankyrin (repeat domain-containing protein n=1 Tax=Anaerotruncus sp. X29 TaxID=2304567 RepID=UPI001FADA4D8)

HSP 1 Score: 61.6 bits (148), Expect = 4.530e-9
Identity = 32/73 (43.84%), Postives = 42/73 (57.53%), Query Frame = 1
Query:   64 LLESGAEVDAVASDGWTPLHLACRWGRVGAIKALVNAGADVNKATKDGRFPSDLLKIHMSPRDRNEVLKLLGE 282
            L++ GA +D    DG TPLHLA  +GRV A+KAL+ AGADVN+ T    +P  L  +  +        KLL E
Sbjct:   68 LIDLGANIDVAQHDGTTPLHLAALFGRVNAVKALLAAGADVNRKTNRSDWPGFLTPLDETLLQNRLPYKLLQE 140          
BLAST of mRNA_H-canaliculatus_M_contigs782.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WHX2_9CRUS)

HSP 1 Score: 58.5 bits (140), Expect = 6.520e-8
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    4 FNNTALHRAASMGFTVITGYLLESGAEVDAVASDGWTPLHLACRWGRVGAIKALVNAGAD 183
            F  TAL  AA      +   LL +GAEVDAV S+G+TPL  AC+WG +  ++ LV+ GAD
Sbjct:  189 FGRTALASAAMENLLQVMKALLAAGAEVDAVLSNGFTPLKYACKWGSLEGVRLLVDHGAD 248          
BLAST of mRNA_H-canaliculatus_M_contigs782.1.1 vs.
Match: NACHT (domain-containing protein n=1 Tax=Thyridium curvatum TaxID=1093900 RepID=A0A507B1B2_9PEZI)

HSP 1 Score: 58.5 bits (140), Expect = 6.670e-8
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   19 LHRAASMGFTVITGYLLESGAEVDAVASDGWTPLHLACRWGRVGAIKALVNAGADVNKATKDGRFPSDLLKI 234
            LH A ++    I   L+  GA+V+   SDGWTPLH ACR G  G ++AL+ +G+ V+   KDG+  S L+ +
Sbjct:  943 LHEACAIRNPEIAAALIAKGADVNKPGSDGWTPLHRACRQGSFGVVEALLCSGS-VDIEAKDGQGLSSLMTL 1013          
BLAST of mRNA_H-canaliculatus_M_contigs782.1.1 vs.
Match: AAEL011910-PA (n=2 Tax=Stegomyia TaxID=53541 RepID=Q16NP6_AEDAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.700e-7
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = 1
Query:    4 FNNTALHRAASMGFTVITGYLLESGAEVDAVASDGWTPLHLACRWGRVGAIKALVNAGADVNKATKDGRFPSDLLKIHMSPRDRN-EVLKLL 276
            +++TALH A ++G   I  YL+ESGAE++AV   G TPLH+A +   + A + L+     +  AT D R  S +  +  +   RN +++KLL
Sbjct: 1411 YDSTALHVAIAIGCNEIAAYLMESGAEINAVTKFGDTPLHVAAKHSNIIAARMLI-----LKYATIDERNSSGMTPLVQAMYSRNLDIMKLL 1497          
BLAST of mRNA_H-canaliculatus_M_contigs782.1.1 vs.
Match: protein (phosphatase 1 regulatory subunit 12A-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7DHP7_HYDVU)

HSP 1 Score: 56.6 bits (135), Expect = 2.430e-7
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   13 TALHRAASMGFTVITGYLLE-SGAEVDAVASDGWTPLHLACRWGRVGAIKALVNAGAD 183
            TALH AAS G+T +   +L+  GA+V+    DGWTPLH A  WG   A + L + GAD
Sbjct:  212 TALHVAASKGYTKVINIILKIPGADVNVKDCDGWTPLHAAVHWGSKSACELLTDFGAD 269          
BLAST of mRNA_H-canaliculatus_M_contigs782.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Anopheles TaxID=44482 RepID=A0A084VXP0_ANOSI)

HSP 1 Score: 56.6 bits (135), Expect = 3.170e-7
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = 1
Query:    4 FNNTALHRAASMGFTVITGYLLESGAEVDAVASDGWTPLHLACRWGRVGAIKALVNAGADVNKATKDGRFPSDLLKIHMSPRDRN-EVLKLL 276
            +++T+LH A ++    I  YL+ESGAE++AV+  G TPLH+A + G + A + L+     +  A  D R  S L  +  +   RN E++KLL
Sbjct: 1424 YDSTSLHVAIAIDCNEIAAYLIESGAEINAVSKFGDTPLHVATKHGNIVAARMLI-----LKYAAIDERNTSGLTPLMQAMYSRNLEIMKLL 1510          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs782.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Similar3.750e-2858.95to fetal globin inducing factor n=2 Tax=Ectocarpus... [more]
Hypothetical1.090e-949.25protein n=1 Tax=Ostreococcus mediterraneus TaxID=1... [more]
Protein1.120e-944.44phosphatase 1 regulatory subunit 12A n=3 Tax=Hydra... [more]
ankyrin4.200e-940.22repeat domain-containing protein 16-like n=1 Tax=C... [more]
ankyrin4.530e-943.84repeat domain-containing protein n=1 Tax=Anaerotru... [more]
Hypothetical6.520e-848.33protein n=1 Tax=Cyprideis torosa TaxID=163714 RepI... [more]
NACHT6.670e-841.67domain-containing protein n=1 Tax=Thyridium curvat... [more]
AAEL011910-PA1.700e-736.96n=2 Tax=Stegomyia TaxID=53541 RepID=Q16NP6_AEDAE[more]
protein2.430e-748.28phosphatase 1 regulatory subunit 12A-like n=1 Tax=... [more]
Uncharacterized3.170e-736.96protein n=2 Tax=Anopheles TaxID=44482 RepID=A0A084... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs782contigH-canaliculatus_M_contigs782:10592..11544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FVG8
PFAMsAnk_4
Model size285
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.15e-29
EggNOG OGsCOG0666@1|root,KOG0512@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-09_001030.1
Descriptionspermatogenesis
Cds size285
COG categoryDTZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854118.362084-CDS-H-canaliculatus_M_contigs782:10591..107661696854118.362084-CDS-H-canaliculatus_M_contigs782:10591..10766Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs782 10592..10766 -
1696854118.373319-CDS-H-canaliculatus_M_contigs782:11434..115441696854118.373319-CDS-H-canaliculatus_M_contigs782:11434..11544Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs782 11435..11544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs782.1.1prot_H-canaliculatus_M_contigs782.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs782 10592..11544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs782.1.1

>prot_H-canaliculatus_M_contigs782.1.1 ID=prot_H-canaliculatus_M_contigs782.1.1|Name=mRNA_H-canaliculatus_M_contigs782.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=95bp
FFNNTALHRAASMGFTVITGYLLESGAEVDAVASDGWTPLHLACRWGRVG
AIKALVNAGADVNKATKDGRFPSDLLKIHMSPRDRNEVLKLLGES
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mRNA from alignment at H-canaliculatus_M_contigs782:10592..11544-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs782.1.1 ID=mRNA_H-canaliculatus_M_contigs782.1.1|Name=mRNA_H-canaliculatus_M_contigs782.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=953bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs782:10592..11544- (Hapterophycus canaliculatus Oshoro7m male)
TTCTTCAACAACACCGCGCTGCACCGAGCGGCATCGATGGGCTTCACGGT CATCACGGGGTATCTCTTGGAGTCGGGGGCGGAGGTGGACGCCGTAGCCA GCGACGGTTGGTGAGGGAGTACAGGAGGCGGAGGAGGAGGAGGAGGAGGA GGAGGAGGAGGAGGAGGAGATGAGACGGAAACAAAAAACCCCGGCAGGGA TGAAGTTTTGCTGATCAACTTGAATCGACGTATCATATACCGGTGCTCGG AGTGTACAAGGATGCGGCCTTCTTGCGCGTTTACCGTTCGGGTTGAACCC GTACGTGTACCGAGCACCGGAGGCAGTGCTCATGCTTTCGAGTTCCGAAG TGGGTCACGAGGGGAACCGAGTGCATCCATCTGTCCTTTGTAGAGAGTTC CCACGGATGGTCCTGTGTCGTCAACTCTGTGTGCGCCCCACCTGCCCACA GCAGTAGTTGACTGCCACAGTGTTGATATCCCACTCCGCCAAGATGGATG CGTGAATCGGCCACGGGACAGAATCTCCGCCCTCGTATTCGTCGGCCGAA GAAATGCACAGGCGCATTGTACGGGTTCCTTCGACCCGCGAGTTGCCCCG CGCCTTTCCTCCCGTCCGGCAAGGTGGACATGTCCGTGAAGGCCGCGATA AGGCCGCGCTCAAGGTCGACCGCTGCTTGATTTCCGAGCCGCATCTACCG CTTTCCTCTCGGTACGCTGCTGGTGCACCTCCCTCCCACGACAGCCCCTT CGCCCTCTCCGCTCGCCCCCGCTCGCAGGACACCCCTCCACTTGGCATGT CGATGGGGCCGCGTGGGCGCAATCAAAGCGCTCGTGAACGCGGGCGCCGA CGTGAACAAGGCGACCAAGGACGGCCGATTTCCGTCGGACCTCTTGAAGA TCCATATGTCACCGCGGGATCGCAACGAGGTTCTGAAGCTTCTCGGTGAG TCC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs782:10592..11544-

>mRNA_H-canaliculatus_M_contigs782.1.1 ID=mRNA_H-canaliculatus_M_contigs782.1.1|Name=mRNA_H-canaliculatus_M_contigs782.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=285bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs782:10592..11544- (Hapterophycus canaliculatus Oshoro7m male)
TTCTTCAACAACACCGCGCTGCACCGAGCGGCATCGATGGGCTTCACGGT
CATCACGGGGTATCTCTTGGAGTCGGGGGCGGAGGTGGACGCCGTAGCCA
GCGACGGTTGGACACCCCTCCACTTGGCATGTCGATGGGGCCGCGTGGGC
GCAATCAAAGCGCTCGTGAACGCGGGCGCCGACGTGAACAAGGCGACCAA
GGACGGCCGATTTCCGTCGGACCTCTTGAAGATCCATATGTCACCGCGGG
ATCGCAACGAGGTTCTGAAGCTTCTCGGTGAGTCC
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