mRNA_H-canaliculatus_M_contigs7740.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7740.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7740.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G416_ECTSI)

HSP 1 Score: 481 bits (1237), Expect = 1.700e-169
Identity = 255/288 (88.54%), Postives = 268/288 (93.06%), Query Frame = 1
Query:    1 STGARATTSRTGAMQTSSMPRGLPAHLDPLSPSVDHLSLIDEVSKGRSQPSMIGGAGGVTEDRNSDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKA--MGAAQKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAPSFLDALPMGSQTNRESLYED 858
            S GAR  T RTGAM  S    GLPA  DPLSPS+DHLS+ID+ SKGRSQPSMIGGAGGVTEDRN+DLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMY+NTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGL AMLLASGEKGHRSALPNASIMLHQPRSMA+GQ SDIAIKA  + A +KTATQML+EACGKP+DEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAP+FLDAL MGS+TNR+SLYED
Sbjct:   41 SNGAREAT-RTGAMHMS----GLPADFDPLSPSMDHLSMIDQASKGRSQPSMIGGAGGVTEDRNTDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYINTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLGAMLLASGEKGHRSALPNASIMLHQPRSMARGQASDIAIKAKEVMANRKTATQMLSEACGKPYDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAPAFLDALSMGSKTNRQSLYED 323          
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRP6_9STRA)

HSP 1 Score: 327 bits (839), Expect = 1.860e-109
Identity = 169/247 (68.42%), Postives = 201/247 (81.38%), Query Frame = 1
Query:   82 DPLSPSVDHLSLIDEVSKGRSQPSMIGGAGGVTEDRNSDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKA--MGAAQKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAPSFLDAL 816
            DPL P   HL L+ + +   + P MI G     E R    DGAR+GPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYES++KP+YMY+NTPGTSTPDGR++GFETEAFAI+DCM Y++PPVYTI VGQAFG  AMLL+ G+KG+R+ALPNASIMLHQPRS A+GQ SDIAIKA  + A +K    ML++ACGKP++ V +D+SRTFYMSPD+AV YGLIDKVL +SKKD+   P FLD++
Sbjct:   48 DPLGPVDQHLPLVAQAA---ASPQMISGGASSGERR---YDGARIGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESSTKPIYMYINTPGTSTPDGRSVGFETEAFAIADCMKYVRPPVYTIAVGQAFGTGAMLLSQGQKGNRAALPNASIMLHQPRSQARGQASDIAIKAREVMANRKITCTMLSQACGKPYEAVEKDASRTFYMSPDEAVTYGLIDKVLTNSKKDNAPKPKFLDSI 288          
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEL5_9STRA)

HSP 1 Score: 281 bits (720), Expect = 1.310e-91
Identity = 152/237 (64.14%), Postives = 181/237 (76.37%), Query Frame = 1
Query:  118 IDEVSKGRSQPSMIGGAGGVTEDRNSDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKA--MGAAQKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKK--DDVVAPSFLDAL 816
            +  +S     PSM+  AGG  ++     DG R+GPPPDL SLLLHNRIVYLGMP+V AVTELI+AELLYLNYES SKPV +Y+N+PGT    G+A+GFETEAFAI+DCM YIKPPV TI VGQAFG  AMLLA GEKG R  LPNASIMLHQPRS A+GQ SDIAI+A  + A +K + ++LA ACG+P DEV+ D+SRT Y+ PD+AVEYGL+DKVL +  K  D    PSF+DAL
Sbjct:   46 VPSMSGATMPPSMV--AGGAAQET---YDGVRIGPPPDLASLLLHNRIVYLGMPMVSAVTELIVAELLYLNYESPSKPVTLYINSPGTVNAQGQAVGFETEAFAIADCMKYIKPPVQTICVGQAFGAAAMLLAQGEKGKRFCLPNASIMLHQPRSQARGQASDIAIRAKEVMANRKVSCELLARACGRPVDEVMRDASRTKYLQPDEAVEYGLVDKVLHNVGKAADAPKKPSFMDAL 277          
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9Z3_9STRA)

HSP 1 Score: 281 bits (718), Expect = 1.600e-91
Identity = 148/224 (66.07%), Postives = 178/224 (79.46%), Query Frame = 1
Query:  151 SMIGGAGGVTEDRNSDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKAMGAA--QKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAPSFLDAL 816
            SM GGA  V +  N    GAR+ PPPDLPSLLLHNRIVY+GMPLVPAVTELIIAELLYLNYESA+KPVYMY+N+PGT++ DGRA+GFETEAFAI+DCM YIKPPV+TI +GQA+G  AMLL+ G  G RS LPN+SIMLHQPRSMA+GQ SDIAIKA      +K    ++A ACGK  D V+ D+SRT Y SP++AVEYG+IDKV+    ++  V PSF+++L
Sbjct:   45 SMHGGA--VPQTYN----GARISPPPDLPSLLLHNRIVYIGMPLVPAVTELIIAELLYLNYESATKPVYMYINSPGTTSADGRAVGFETEAFAIADCMKYIKPPVHTICIGQAYGAAAMLLSQGALGKRSCLPNSSIMLHQPRSMARGQASDIAIKAREVLNNRKVTCSLIARACGKDLDTVMNDASRTRYFSPEEAVEYGIIDKVMSPKAQNLPVTPSFMNSL 262          
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZCQ2_9RHOD)

HSP 1 Score: 275 bits (702), Expect = 3.490e-89
Identity = 140/210 (66.67%), Postives = 167/210 (79.52%), Query Frame = 1
Query:  193 SDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKAMGAA--QKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAPSFLDAL 816
            S  +GAR+GPPPDLPSLLLHNRIVY+GMPLVPAVTELIIAELLYL Y    KP++MYVN+ GT+ PDG + GFETEAFA+ D MNYIKPPV+TI +GQAFG  AMLLA GEKGHR+ALPNA++M+HQPRS A+GQ +DIAIKA      ++   +++AEACGK  D V+ D++RT Y+S  DAVEYGLIDKVL S K     AP+FL AL
Sbjct:   47 SSYEGARIGPPPDLPSLLLHNRIVYIGMPLVPAVTELIIAELLYLQYNDTDKPIFMYVNSTGTTNPDGSSAGFETEAFAVVDTMNYIKPPVHTICIGQAFGTAAMLLAGGEKGHRAALPNATVMIHQPRSTARGQAADIAIKAKEVLLNRRVTMEIIAEACGKDLDTVMADAARTRYLSAADAVEYGLIDKVLESPKDLPSPAPTFLSAL 256          
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0T1_AURAN)

HSP 1 Score: 273 bits (697), Expect = 6.180e-89
Identity = 142/210 (67.62%), Postives = 169/210 (80.48%), Query Frame = 1
Query:  202 DGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKA--MGAAQKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVA---PSFLDAL 816
            DG R+GPPPDL SLLLHNRIVYLGMP+V AVTELI+AELLYLNYES +KPV +Y+N+PGT    G+++GFETEAFAI+DCM YIKPPV TI VGQAFG  AMLLA GEKG R  LPNASIMLHQPRS A+GQ SDIAI+A  + + +K + +++A ACG+  DEV+ D+SRT Y+ PD+AVEYGLIDKVL +  KD   A   PSF+DAL
Sbjct:   12 DGVRIGPPPDLASLLLHNRIVYLGMPMVSAVTELIVAELLYLNYESPTKPVTLYINSPGTVNSQGQSVGFETEAFAIADCMKYIKPPVQTICVGQAFGAAAMLLAQGEKGKRFCLPNASIMLHQPRSQARGQASDIAIRAREVMSNRKVSCELMARACGRSVDEVMADASRTKYLQPDEAVEYGLIDKVLHNVGKDAAAAVAKPSFMDAL 221          
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWT2_9STRA)

HSP 1 Score: 275 bits (703), Expect = 6.410e-89
Identity = 143/220 (65.00%), Postives = 177/220 (80.45%), Query Frame = 1
Query:  166 AGGVTEDRNSDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKAMGAA--QKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVA-PSFLDAL 816
            AGG  ++     DG R+GPPPDL SLLLHNRIVYLGMP+VPAVTELI+AELLYLNYESA+KPV +Y+N+PGT + DGR++GFETEAFAI+D M YIKPPV+TI VGQAFG  AMLL+ G KG R+ LPNASIMLHQPRSMA+GQ SD+AIKA      +K   ++LA ACGK  +EVL+D+ RT Y++P+ AV+YGLID+VL ++ ++ V   PSF+DAL
Sbjct:   69 AGGAEQEM---YDGVRIGPPPDLASLLLHNRIVYLGMPMVPAVTELIVAELLYLNYESATKPVTLYINSPGTVSADGRSVGFETEAFAIADTMKYIKPPVHTICVGQAFGAAAMLLSQGAKGFRACLPNASIMLHQPRSMARGQASDVAIKAREVMVNRKIQCELLARACGKSVEEVLQDAQRTKYLTPEQAVQYGLIDRVLHTTARESVEQQPSFMDAL 285          
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEQ2_CHOCR)

HSP 1 Score: 273 bits (699), Expect = 1.530e-88
Identity = 148/228 (64.91%), Postives = 176/228 (77.19%), Query Frame = 1
Query:  139 RSQPSMIGGAGGVTEDRNSDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKAMGAA--QKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAPSFLDAL 816
            R+ P  +  AGG T       DGAR GPPPDLPSLLLHNRIVYLGM LVPAVTELIIAE LYL YE ASKPVYMY+N+ GTS+PDG+ +GFETEAFA++D MNY+K PV+TI VGQAFG+ AMLLASGEK HR+ALPNA+IMLHQPR  AQGQ SDIAIKA      +K A  ++AE  G+P ++V +D++RT Y SP +A +YG+IDKVL+S K     AP+FL AL
Sbjct:   45 RATPRAMQSAGGGTM-----YDGARAGPPPDLPSLLLHNRIVYLGMSLVPAVTELIIAEFLYLQYEDASKPVYMYINSTGTSSPDGQNVGFETEAFAVADTMNYVKMPVHTICVGQAFGMAAMLLASGEKTHRAALPNATIMLHQPRGSAQGQASDIAIKAKEVLYNRKQAFGIIAERSGQPLEQVEKDATRTKYFSPAEAADYGIIDKVLQSEKDLPQRAPTFLSAL 267          
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P675_PORUM)

HSP 1 Score: 272 bits (696), Expect = 4.650e-88
Identity = 141/207 (68.12%), Postives = 169/207 (81.64%), Query Frame = 1
Query:  202 DGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKAMGAA--QKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAPSFLDAL 816
            DG R+GPPPDLPSLLLHNRI+YLGMPLV AVTELIIAE LYL YE A KP+ +Y+N+ GTS+PDG+ +GFETEAFAI+D M+Y+KPPV+TI VGQAFG+ AMLLASGEKGHRSALPNA+IMLHQPR  A+GQ +DIAIKA      +K A Q++A+A G+P ++V  D++RT Y+SP +A EYGLIDKVL S K     APSFL AL
Sbjct:   63 DGVRLGPPPDLPSLLLHNRIIYLGMPLVAAVTELIIAEFLYLQYEDAEKPITLYINSTGTSSPDGQNVGFETEAFAIADTMSYVKPPVHTICVGQAFGMAAMLLASGEKGHRSALPNATIMLHQPRGSARGQAADIAIKAREVLHNRKQAFQIMADASGQPLEQVEADANRTKYLSPQEAKEYGLIDKVLTSEKDLPSKAPSFLSAL 269          
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=6 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EA22_9RHOD)

HSP 1 Score: 271 bits (692), Expect = 1.040e-87
Identity = 136/210 (64.76%), Postives = 173/210 (82.38%), Query Frame = 1
Query:  193 SDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKAMGAA--QKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAPSFLDAL 816
            S  +GAR+GPPPDLPSLLLHNRI+YLGMPLVPAVTELIIAELLYL Y++A KPV+MY+N+ GTS+ +G+ +GFETEAFAI D MNY+KPP++TI +GQAFG+ AMLL +GEKGHR+ALPN++IMLHQPR  AQGQ +DIAIKA      +K A Q++A++CG+  ++V  D++RT Y++  +A EYGLIDKVL S K   V APSF+DA+
Sbjct:   43 SSYEGARIGPPPDLPSLLLHNRIIYLGMPLVPAVTELIIAELLYLQYDNAEKPVFMYINSTGTSSAEGQNVGFETEAFAIVDTMNYVKPPIHTICIGQAFGMAAMLLGAGEKGHRAALPNSTIMLHQPRGQAQGQAADIAIKAREVLFNRKQAFQIIADSCGQTLEQVQADANRTKYLTSVEAKEYGLIDKVLPSPKDLPVQAPSFMDAV 252          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ATP-dependent1.700e-16988.54Clp protease proteolytic subunit n=2 Tax=Ectocarpu... [more]
ATP-dependent1.860e-10968.42Clp protease proteolytic subunit n=1 Tax=Tribonema... [more]
ATP-dependent1.310e-9164.14Clp protease proteolytic subunit n=1 Tax=Pelagomon... [more]
ATP-dependent1.600e-9166.07Clp protease proteolytic subunit n=1 Tax=Rhizochro... [more]
ATP-dependent3.490e-8966.67Clp protease proteolytic subunit n=1 Tax=Timspurck... [more]
ATP-dependent6.180e-8967.62Clp protease proteolytic subunit n=1 Tax=Aureococc... [more]
ATP-dependent6.410e-8965.00Clp protease proteolytic subunit n=1 Tax=Aureoumbr... [more]
ATP-dependent1.530e-8864.91Clp protease proteolytic subunit n=1 Tax=Chondrus ... [more]
ATP-dependent4.650e-8868.12Clp protease proteolytic subunit n=1 Tax=Porphyra ... [more]
ATP-dependent1.040e-8764.76Clp protease proteolytic subunit n=6 Tax=Rhodosoru... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7740contigH-canaliculatus_M_contigs7740:396..5177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G416
Preferred nameCLPR4
PFAMsCLP_protease
Model size861
Max annot lvl2759|Eukaryota
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0010468,GO:0019222,GO:0031967,GO:0031975,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:1901700
Exons6
Evalue2.78e-170
EggNOG OGsCOG0740@1|root,KOG0840@2759|Eukaryota
Ec32 ortholog descriptionATP-dependent Clp protease proteolytic subunit
Ec32 orthologEc-19_000460.1
EC3.4.21.92
Descriptionserine-type endopeptidase activity
Cds size861
COG categoryOU
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7740.1.1prot_H-canaliculatus_M_contigs7740.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7740 396..5177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854111.4645028-CDS-H-canaliculatus_M_contigs7740:395..4971696854111.4645028-CDS-H-canaliculatus_M_contigs7740:395..497Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7740 396..497 -
1696854111.4794586-CDS-H-canaliculatus_M_contigs7740:1320..14441696854111.4794586-CDS-H-canaliculatus_M_contigs7740:1320..1444Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7740 1321..1444 -
1696854111.4903374-CDS-H-canaliculatus_M_contigs7740:2801..29501696854111.4903374-CDS-H-canaliculatus_M_contigs7740:2801..2950Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7740 2802..2950 -
1696854111.501981-CDS-H-canaliculatus_M_contigs7740:3632..38031696854111.501981-CDS-H-canaliculatus_M_contigs7740:3632..3803Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7740 3633..3803 -
1696854111.513651-CDS-H-canaliculatus_M_contigs7740:4250..44121696854111.513651-CDS-H-canaliculatus_M_contigs7740:4250..4412Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7740 4251..4412 -
1696854111.5258162-CDS-H-canaliculatus_M_contigs7740:5024..51771696854111.5258162-CDS-H-canaliculatus_M_contigs7740:5024..5177Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7740 5025..5177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7740.1.1

>prot_H-canaliculatus_M_contigs7740.1.1 ID=prot_H-canaliculatus_M_contigs7740.1.1|Name=mRNA_H-canaliculatus_M_contigs7740.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=287bp
STGARATTSRTGAMQTSSMPRGLPAHLDPLSPSVDHLSLIDEVSKGRSQP
SMIGGAGGVTEDRNSDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTE
LIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNY
IKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQG
SDIAIKAMGAAQKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGL
IDKVLRSSKKDDVVAPSFLDALPMGSQTNRESLYED*
back to top

mRNA from alignment at H-canaliculatus_M_contigs7740:396..5177-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7740.1.1 ID=mRNA_H-canaliculatus_M_contigs7740.1.1|Name=mRNA_H-canaliculatus_M_contigs7740.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4782bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7740:396..5177- (Hapterophycus canaliculatus Oshoro7m male)
AGCACCGGGGCGAGAGCGACGACTTCGCGGACGGGAGCGATGCAAACGTC GTCCATGCCGAGGGGTTTGCCTGCGCACCTCGACCCGTTATCACCTAGCG TGGACCACCTATCGTTGATCGACGAGGTTAGCAAGGGACGATCTCAACCA TCGGTGAGTTCTGGGCCGGTCGCAGAGTCCGTTCATGGCGCGAGGCATAG CCGTGTTAATACTGCCGGACGCTGCTTTTGCTGCAGCCGCTTGTCTTCGA GGTGCTGCTCTTGCGAAACCTCGTGCTCGAGTCGTCATTCACGGAAAGAT ATGATTTTGGGACGTGTCGATTTGGGGTGAACCCCTACCCCGGAGAGCAG AAGGTGTCGTCCCCACCGCAGCAACGTGGAGCCTGCTGGTTCTCTTGCGT TTCGCTGCTTTTTTCCAGGTACATCCTGTCTGACTTTCATCCTGCGGTTC TCGCGTTGGTGTTTCTCTTATCAAGGAACAGTTGTCGTGTCCGCTGGAGA GTAAAAGTAAAAAGTACGAAACCTGCTCGAGAGAAGAAGTAAGCACGAAT CGACTGCTGCCTACCGTCTGTTTTTTCGTACCACTACAACAGCAAATGTT GCCTGATTCCACGACGGGTGGACGACGTGCCCAGCGCAGAGCATCGATGG CGATTGGTTCAGCGGTTTCCAACGTGTCGCAACGTTTTCTGCCCGCCTGT GCGCGAGACCGAACTCGTCTTTTAATCCCATTTTGTTCGGTGGTGTGACG GTCGTATGGCAACAGATGATCGGGGGTGCCGGCGGTGTGACGGAGGACAG AAACTCAGACCTCGACGGGGCCAGGGTCGGCCCCCCTCCCGACCTCCCGT CGCTGCTTCTGCACAACCGTATCGTGTACTTGGGCATGCCCCTAGTGCCG GCCGTTACGGAGCTGATCATCGCCGAGGTACGTCGGAAGTACCAACGTGT TCCGGAGATGGAGGTTGTGCTGGCCGTGGCGGTAGCGATGAAGAAACCAT GTTGCTTGTGGTGTTGTTGGAAGAAGCGGTTGCGCCGCGTCGTCGACATT CCATCGGGAGCTCATTCACCGGTGACGGCTGGTGTCTTGAGGTAGCGCAG AGCGTAGAGGACGGCTCAGCGGGTAAGGCTGGCAAACGCGCATACCCCTT TCCTGCACCTTTCAGGAAAAAGGAGTCGCGCCCACGTCACAAATTTCACC GCCGTGACGTTTGTGTCTTGATTTGTGCTTCTTCCATGGCGCAAGCAGCC CTCTCGCCCCTCCACGTCCGCCATAGGCGATCAAAGCAAACTGATGTCGT GCGCGCATGCATTGCAAGCTCAACACCTACAACCTCAACAACCTCACTCG TCTCATTTCCCCGTTTTTTCTCAGTTGCTGTACCTGAACTACGAGTCGGC GTCTAAGCCCGTCTACATGTACGTGAACACTCCGGGCACCTCCACCCCCG ACGGTCGTGCGATCGGGTTCGAGACCGAGGCTTTCGCCATCAGCGACTGC ATGAACTACATCAAGCCTCCCGTCTACACCATCGGAGTGGGACAGGTAGG TTGCCATCCTCATTCTCACCCGAGTGTTTTCACGTGTTCAGGAAGCGTTT GGCTTGATATGTTGTTATTGGCGTTGATGGACACAGTCCCCTGACTTGAA TGCTCAAGCTGGCATTCTTATGCAAAGGACTAATACACGGAGGTCCTCTC ACCGTCCAGCCTACGAAACAGCATGGGTATGGGCTACGCCGGTTGCAATT TCTGTCACTTCTTCAGGTGTTTTTTTCTTGAGCCCGCAAGAGCTCCAAGT CGCACCCGCTGTGAAGAGGCATTCGGTTCAAAGTTGTGTGTCGTCCATGA GTCGAAGCTCATGAAAACGTCTATGCTATGGAGACCGACTGGTGCAACCT GGTAACGCGAGGAGCAGACTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCC GCTGCTGGGTGGCATCGTCTTCGTTGTTGTGTCTGTTGTCGTCGAGCGTC GTGCTTGGTGCCGCCGCTGGTGTCACGGTTGCAATCTAGTTTATTTTGAG AAGCAATCTAGCCTGGTCACAGATGTTACCCGATCTCCCACGTGCCTCAG GGTGATCCAACATGCCGCTACTGAACACTACGAAGTGTTTATTTTTTTAT TAATCGGCGATGGACCCTTCTCCGTTCGTCCTTGAATTTCGATGGACGGG GCTCTTTTTTCTTGTTTCGTTTGCCAGGCGTTCGGGCTCCGGGCGATGTT GTTGGCCTCTGGAGAGAAGGGTCACCGGTCGGCCTTGCCCAACGCGAGCA TTATGCTCCACCAGCCCCGTAGCATGGCGCAAGGACAGGGGTCGGATATC GCCATCAAGGCCATGGGAGCCGCGCAGTAGCTGTGTGCTGTAGTTGTTAG TTTTGTTTGTGCTGCTGTTGTTTTTGTTGCAGTTACGATCAATTGTCAAT GTTGCTGTTTTGTGGAGGTCGTGATTCCCGTTGTCCTGTCAAGAAATATC CATAAAACGTCTGCCCGACCCCTTCATGTCTCACGCTTAGAGGACGCAGT ATCTGAAACGACGATTTCGTCCTTGCGCTTCCTGCCATTAAGAGTGATGT ATACTCTAAAAGCTTGGCGGACAAGATAACAGTGCAAAAGATAGAGGTCC AAACCCTTCTCTCCCCGTCACTTAGACAACGTTTTGCCATTCCACAACAC AAGAAGGATTATGCACGCCCTCGACGGATGGTCCTGGTCTTTTTTTTTTT TTTTTTTGTTTTCACGACGCAACTTCAAAGAGCCGTTTCCACATGAGTGA TGTGAAAGCACACCATTATATGCTTGCAGTTGTACAAGCGCTGTAACGGG AGAGAGCAAAAGAAAAGCTGCCGCGTGGGGTTCGACAACGCACCCGCTTT TGCTCCGTATATGATCGGGATGACTCACGTTTGAGTCGCGCGACATTTTC GGTCCATCCCCAAATTGATGATCGTTCATCAACTGGACCAGCTGTTGTTG TCAACGTCTTTGGCACGGTCACCCTGTTGTCACCCTGTTGTACATGAGCT CCTTCTCGAACCTTTTCCTGGGGGTGTTGTTCGGTTGGACATTGCATCAC GTCGTATGATGCAATGTGATTTCGTTTGTCGAACACCTTTTCAAGGCGGA AAGCTAACTTTTTGTGTTTCTGTTCCGCTACTTTTTTCCTCGCGTCGCTC AAGGCAGAAAACTCTCTCGGTATTACTGGTGTGTTGGCTAATAATACGTC CGGCATAAATGCCAGACAGACCGCTTGTGTTACTCATGGGAAACTCCCGA GATGTGGTGCGCCCTTTGCTCAAGTGGGGTGCGGAATGTGCGCGCCATTT TCTGATTTTTGGGCTGCCGATATTTCACCGATTTGACGGCAGAAGATCTT GTAGAATCGGAAATGGTGCTGCTGTCGTTCGTTCCCCACCTTCTTGGGTG TAAGCCGCTGCCCTCTCTTCCCGACTACCCACTGCGGCTACGTGGTTGAC GTCGTTGTGCTGTTGGCTCCTGCTGCTGCGTCGCACGCTAGGTCGGAAAA AAAAGGGAAATTGGGAAATTGGCATGTCGTGTTGGATCAGGCTCGACCAG TTAGTTCGTCGTCTCCATTCTCTTGTGAGGAGATGTTGCTACTCGGGGGT ACCAAAGTGCTGCTTTCGTCTGAGAGTAAAAATGGTTGCATGATTCGTCG TCAACTTGCGCGTGCGCAGGTCATGGCCAACAGGAAAACGGCCACCCAGA TGCTGGCTGAGGCTTGCGGAAAGCCGTTCGACGAGGTTCTGGAAGATTCG TCAAGAACCTTCTACATGTCTCCCGATGACGCGGTCGAGTACGGGCTCAT TGACAAGGTGATCCCCACAACCCAACCCCATTCAACATGTGGTCATATTT TCGGCCAATGCAGGCTTTCGTCTCGAACTGCTCTGCCCGTATCCACGTCT GCATGATTTCTGAGGGCATGAAACAGCAAGACGAACAACATACCAGCTAT GCATCTGCCTCAAATCATACGTCAACATGATCTTCGCAAGCTGCACATAC CGGGTTTAGCTGTAGCTCTCTTGTTCGTATCGAAGTATGTTGCTCACAGC CGTGTCCAGCGCTTCAGTTATCTTCGTGAGTGCTTTTTGGCCGAACTGAC GTCGTCTAGCTGCCGTCTATCTGGACAAGAAAGAGCTTGATTCCCGCAGG TACACCTAACCGGCGGACAGCCTGCTGAAGTCAGGGATCATCTAGTCGAA GCCATCCCGTCACAGGCGTCCCTCCTACCCAGCTGTCAACCTTTTTCACA CGGTTCAAACCGAATCGTGTATCATAGATTTTCGTCTGTGAACCGGCGTT CCAGCGAGGCAGGCAGACCGGCTAGGCCGAAGTAAGGTGTCGGCGTTGGT AGTTTGTGTTGGTGACTCCGCACTGACTGCACCGCCCACAGCAGTACGCC AGGTTGTCCAACACGACGAGAATTGATGTTCGCCTATGTCACAAACACGC CCGACACTTCATTATCGTTCCCCCCTTCTTTGCTTGTGTCCGAGCTTGTT CTTGGGGGCAAGTAAGGATTAGCCGCTCACTTGTACATGGATCTGCCGCA ATTCTGGGTGGTATCCGATGCCGCCCCCCCCCCACCGCTGCGTGTTGTGT TTCGTTGGTGTTCGTTTTCGTTCTCAACAGGTGCTGCGGTCGAGCAAGAA GGACGATGTCGTGGCCCCGTCCTTCCTGGATGCTCTGCCCATGGGTTCCC AGACAAACAGGGAATCCTTGTACGAGGACTAA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7740:396..5177-

>mRNA_H-canaliculatus_M_contigs7740.1.1 ID=mRNA_H-canaliculatus_M_contigs7740.1.1|Name=mRNA_H-canaliculatus_M_contigs7740.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=861bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7740:396..5177- (Hapterophycus canaliculatus Oshoro7m male)
AGCACCGGGGCGAGAGCGACGACTTCGCGGACGGGAGCGATGCAAACGTC
GTCCATGCCGAGGGGTTTGCCTGCGCACCTCGACCCGTTATCACCTAGCG
TGGACCACCTATCGTTGATCGACGAGGTTAGCAAGGGACGATCTCAACCA
TCGATGATCGGGGGTGCCGGCGGTGTGACGGAGGACAGAAACTCAGACCT
CGACGGGGCCAGGGTCGGCCCCCCTCCCGACCTCCCGTCGCTGCTTCTGC
ACAACCGTATCGTGTACTTGGGCATGCCCCTAGTGCCGGCCGTTACGGAG
CTGATCATCGCCGAGTTGCTGTACCTGAACTACGAGTCGGCGTCTAAGCC
CGTCTACATGTACGTGAACACTCCGGGCACCTCCACCCCCGACGGTCGTG
CGATCGGGTTCGAGACCGAGGCTTTCGCCATCAGCGACTGCATGAACTAC
ATCAAGCCTCCCGTCTACACCATCGGAGTGGGACAGGCGTTCGGGCTCCG
GGCGATGTTGTTGGCCTCTGGAGAGAAGGGTCACCGGTCGGCCTTGCCCA
ACGCGAGCATTATGCTCCACCAGCCCCGTAGCATGGCGCAAGGACAGGGG
TCGGATATCGCCATCAAGGCCATGGGAGCCGCGCAGAAAACGGCCACCCA
GATGCTGGCTGAGGCTTGCGGAAAGCCGTTCGACGAGGTTCTGGAAGATT
CGTCAAGAACCTTCTACATGTCTCCCGATGACGCGGTCGAGTACGGGCTC
ATTGACAAGGTGCTGCGGTCGAGCAAGAAGGACGATGTCGTGGCCCCGTC
CTTCCTGGATGCTCTGCCCATGGGTTCCCAGACAAACAGGGAATCCTTGT
ACGAGGACTAA
back to top