mRNA_H-canaliculatus_M_contigs7740.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G416_ECTSI) HSP 1 Score: 481 bits (1237), Expect = 1.700e-169 Identity = 255/288 (88.54%), Postives = 268/288 (93.06%), Query Frame = 1
Query: 1 STGARATTSRTGAMQTSSMPRGLPAHLDPLSPSVDHLSLIDEVSKGRSQPSMIGGAGGVTEDRNSDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKA--MGAAQKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAPSFLDALPMGSQTNRESLYED 858
S GAR T RTGAM S GLPA DPLSPS+DHLS+ID+ SKGRSQPSMIGGAGGVTEDRN+DLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMY+NTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGL AMLLASGEKGHRSALPNASIMLHQPRSMA+GQ SDIAIKA + A +KTATQML+EACGKP+DEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAP+FLDAL MGS+TNR+SLYED
Sbjct: 41 SNGAREAT-RTGAMHMS----GLPADFDPLSPSMDHLSMIDQASKGRSQPSMIGGAGGVTEDRNTDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYINTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLGAMLLASGEKGHRSALPNASIMLHQPRSMARGQASDIAIKAKEVMANRKTATQMLSEACGKPYDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAPAFLDALSMGSKTNRQSLYED 323
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRP6_9STRA) HSP 1 Score: 327 bits (839), Expect = 1.860e-109 Identity = 169/247 (68.42%), Postives = 201/247 (81.38%), Query Frame = 1
Query: 82 DPLSPSVDHLSLIDEVSKGRSQPSMIGGAGGVTEDRNSDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKA--MGAAQKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAPSFLDAL 816
DPL P HL L+ + + + P MI G E R DGAR+GPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYES++KP+YMY+NTPGTSTPDGR++GFETEAFAI+DCM Y++PPVYTI VGQAFG AMLL+ G+KG+R+ALPNASIMLHQPRS A+GQ SDIAIKA + A +K ML++ACGKP++ V +D+SRTFYMSPD+AV YGLIDKVL +SKKD+ P FLD++
Sbjct: 48 DPLGPVDQHLPLVAQAA---ASPQMISGGASSGERR---YDGARIGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESSTKPIYMYINTPGTSTPDGRSVGFETEAFAIADCMKYVRPPVYTIAVGQAFGTGAMLLSQGQKGNRAALPNASIMLHQPRSQARGQASDIAIKAREVMANRKITCTMLSQACGKPYEAVEKDASRTFYMSPDEAVTYGLIDKVLTNSKKDNAPKPKFLDSI 288
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEL5_9STRA) HSP 1 Score: 281 bits (720), Expect = 1.310e-91 Identity = 152/237 (64.14%), Postives = 181/237 (76.37%), Query Frame = 1
Query: 118 IDEVSKGRSQPSMIGGAGGVTEDRNSDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKA--MGAAQKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKK--DDVVAPSFLDAL 816
+ +S PSM+ AGG ++ DG R+GPPPDL SLLLHNRIVYLGMP+V AVTELI+AELLYLNYES SKPV +Y+N+PGT G+A+GFETEAFAI+DCM YIKPPV TI VGQAFG AMLLA GEKG R LPNASIMLHQPRS A+GQ SDIAI+A + A +K + ++LA ACG+P DEV+ D+SRT Y+ PD+AVEYGL+DKVL + K D PSF+DAL
Sbjct: 46 VPSMSGATMPPSMV--AGGAAQET---YDGVRIGPPPDLASLLLHNRIVYLGMPMVSAVTELIVAELLYLNYESPSKPVTLYINSPGTVNAQGQAVGFETEAFAIADCMKYIKPPVQTICVGQAFGAAAMLLAQGEKGKRFCLPNASIMLHQPRSQARGQASDIAIRAKEVMANRKVSCELLARACGRPVDEVMRDASRTKYLQPDEAVEYGLVDKVLHNVGKAADAPKKPSFMDAL 277
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9Z3_9STRA) HSP 1 Score: 281 bits (718), Expect = 1.600e-91 Identity = 148/224 (66.07%), Postives = 178/224 (79.46%), Query Frame = 1
Query: 151 SMIGGAGGVTEDRNSDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKAMGAA--QKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAPSFLDAL 816
SM GGA V + N GAR+ PPPDLPSLLLHNRIVY+GMPLVPAVTELIIAELLYLNYESA+KPVYMY+N+PGT++ DGRA+GFETEAFAI+DCM YIKPPV+TI +GQA+G AMLL+ G G RS LPN+SIMLHQPRSMA+GQ SDIAIKA +K ++A ACGK D V+ D+SRT Y SP++AVEYG+IDKV+ ++ V PSF+++L
Sbjct: 45 SMHGGA--VPQTYN----GARISPPPDLPSLLLHNRIVYIGMPLVPAVTELIIAELLYLNYESATKPVYMYINSPGTTSADGRAVGFETEAFAIADCMKYIKPPVHTICIGQAYGAAAMLLSQGALGKRSCLPNSSIMLHQPRSMARGQASDIAIKAREVLNNRKVTCSLIARACGKDLDTVMNDASRTRYFSPEEAVEYGIIDKVMSPKAQNLPVTPSFMNSL 262
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZCQ2_9RHOD) HSP 1 Score: 275 bits (702), Expect = 3.490e-89 Identity = 140/210 (66.67%), Postives = 167/210 (79.52%), Query Frame = 1
Query: 193 SDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKAMGAA--QKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAPSFLDAL 816
S +GAR+GPPPDLPSLLLHNRIVY+GMPLVPAVTELIIAELLYL Y KP++MYVN+ GT+ PDG + GFETEAFA+ D MNYIKPPV+TI +GQAFG AMLLA GEKGHR+ALPNA++M+HQPRS A+GQ +DIAIKA ++ +++AEACGK D V+ D++RT Y+S DAVEYGLIDKVL S K AP+FL AL
Sbjct: 47 SSYEGARIGPPPDLPSLLLHNRIVYIGMPLVPAVTELIIAELLYLQYNDTDKPIFMYVNSTGTTNPDGSSAGFETEAFAVVDTMNYIKPPVHTICIGQAFGTAAMLLAGGEKGHRAALPNATVMIHQPRSTARGQAADIAIKAKEVLLNRRVTMEIIAEACGKDLDTVMADAARTRYLSAADAVEYGLIDKVLESPKDLPSPAPTFLSAL 256
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0T1_AURAN) HSP 1 Score: 273 bits (697), Expect = 6.180e-89 Identity = 142/210 (67.62%), Postives = 169/210 (80.48%), Query Frame = 1
Query: 202 DGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKA--MGAAQKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVA---PSFLDAL 816
DG R+GPPPDL SLLLHNRIVYLGMP+V AVTELI+AELLYLNYES +KPV +Y+N+PGT G+++GFETEAFAI+DCM YIKPPV TI VGQAFG AMLLA GEKG R LPNASIMLHQPRS A+GQ SDIAI+A + + +K + +++A ACG+ DEV+ D+SRT Y+ PD+AVEYGLIDKVL + KD A PSF+DAL
Sbjct: 12 DGVRIGPPPDLASLLLHNRIVYLGMPMVSAVTELIVAELLYLNYESPTKPVTLYINSPGTVNSQGQSVGFETEAFAIADCMKYIKPPVQTICVGQAFGAAAMLLAQGEKGKRFCLPNASIMLHQPRSQARGQASDIAIRAREVMSNRKVSCELMARACGRSVDEVMADASRTKYLQPDEAVEYGLIDKVLHNVGKDAAAAVAKPSFMDAL 221
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWT2_9STRA) HSP 1 Score: 275 bits (703), Expect = 6.410e-89 Identity = 143/220 (65.00%), Postives = 177/220 (80.45%), Query Frame = 1
Query: 166 AGGVTEDRNSDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKAMGAA--QKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVA-PSFLDAL 816
AGG ++ DG R+GPPPDL SLLLHNRIVYLGMP+VPAVTELI+AELLYLNYESA+KPV +Y+N+PGT + DGR++GFETEAFAI+D M YIKPPV+TI VGQAFG AMLL+ G KG R+ LPNASIMLHQPRSMA+GQ SD+AIKA +K ++LA ACGK +EVL+D+ RT Y++P+ AV+YGLID+VL ++ ++ V PSF+DAL
Sbjct: 69 AGGAEQEM---YDGVRIGPPPDLASLLLHNRIVYLGMPMVPAVTELIVAELLYLNYESATKPVTLYINSPGTVSADGRSVGFETEAFAIADTMKYIKPPVHTICVGQAFGAAAMLLSQGAKGFRACLPNASIMLHQPRSMARGQASDVAIKAREVMVNRKIQCELLARACGKSVEEVLQDAQRTKYLTPEQAVQYGLIDRVLHTTARESVEQQPSFMDAL 285
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEQ2_CHOCR) HSP 1 Score: 273 bits (699), Expect = 1.530e-88 Identity = 148/228 (64.91%), Postives = 176/228 (77.19%), Query Frame = 1
Query: 139 RSQPSMIGGAGGVTEDRNSDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKAMGAA--QKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAPSFLDAL 816
R+ P + AGG T DGAR GPPPDLPSLLLHNRIVYLGM LVPAVTELIIAE LYL YE ASKPVYMY+N+ GTS+PDG+ +GFETEAFA++D MNY+K PV+TI VGQAFG+ AMLLASGEK HR+ALPNA+IMLHQPR AQGQ SDIAIKA +K A ++AE G+P ++V +D++RT Y SP +A +YG+IDKVL+S K AP+FL AL
Sbjct: 45 RATPRAMQSAGGGTM-----YDGARAGPPPDLPSLLLHNRIVYLGMSLVPAVTELIIAEFLYLQYEDASKPVYMYINSTGTSSPDGQNVGFETEAFAVADTMNYVKMPVHTICVGQAFGMAAMLLASGEKTHRAALPNATIMLHQPRGSAQGQASDIAIKAKEVLYNRKQAFGIIAERSGQPLEQVEKDATRTKYFSPAEAADYGIIDKVLQSEKDLPQRAPTFLSAL 267
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P675_PORUM) HSP 1 Score: 272 bits (696), Expect = 4.650e-88 Identity = 141/207 (68.12%), Postives = 169/207 (81.64%), Query Frame = 1
Query: 202 DGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKAMGAA--QKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAPSFLDAL 816
DG R+GPPPDLPSLLLHNRI+YLGMPLV AVTELIIAE LYL YE A KP+ +Y+N+ GTS+PDG+ +GFETEAFAI+D M+Y+KPPV+TI VGQAFG+ AMLLASGEKGHRSALPNA+IMLHQPR A+GQ +DIAIKA +K A Q++A+A G+P ++V D++RT Y+SP +A EYGLIDKVL S K APSFL AL
Sbjct: 63 DGVRLGPPPDLPSLLLHNRIIYLGMPLVAAVTELIIAEFLYLQYEDAEKPITLYINSTGTSSPDGQNVGFETEAFAIADTMSYVKPPVHTICVGQAFGMAAMLLASGEKGHRSALPNATIMLHQPRGSARGQAADIAIKAREVLHNRKQAFQIMADASGQPLEQVEADANRTKYLSPQEAKEYGLIDKVLTSEKDLPSKAPSFLSAL 269
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=6 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EA22_9RHOD) HSP 1 Score: 271 bits (692), Expect = 1.040e-87 Identity = 136/210 (64.76%), Postives = 173/210 (82.38%), Query Frame = 1
Query: 193 SDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYVNTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLRAMLLASGEKGHRSALPNASIMLHQPRSMAQGQGSDIAIKAMGAA--QKTATQMLAEACGKPFDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAPSFLDAL 816
S +GAR+GPPPDLPSLLLHNRI+YLGMPLVPAVTELIIAELLYL Y++A KPV+MY+N+ GTS+ +G+ +GFETEAFAI D MNY+KPP++TI +GQAFG+ AMLL +GEKGHR+ALPN++IMLHQPR AQGQ +DIAIKA +K A Q++A++CG+ ++V D++RT Y++ +A EYGLIDKVL S K V APSF+DA+
Sbjct: 43 SSYEGARIGPPPDLPSLLLHNRIIYLGMPLVPAVTELIIAELLYLQYDNAEKPVFMYINSTGTSSAEGQNVGFETEAFAIVDTMNYVKPPIHTICIGQAFGMAAMLLGAGEKGHRAALPNSTIMLHQPRGQAQGQAADIAIKAREVLFNRKQAFQIIADSCGQTLEQVQADANRTKYLTSVEAKEYGLIDKVLPSPKDLPVQAPSFMDAV 252 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7740.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7740.1.1 >prot_H-canaliculatus_M_contigs7740.1.1 ID=prot_H-canaliculatus_M_contigs7740.1.1|Name=mRNA_H-canaliculatus_M_contigs7740.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=287bp STGARATTSRTGAMQTSSMPRGLPAHLDPLSPSVDHLSLIDEVSKGRSQPback to top mRNA from alignment at H-canaliculatus_M_contigs7740:396..5177- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7740.1.1 ID=mRNA_H-canaliculatus_M_contigs7740.1.1|Name=mRNA_H-canaliculatus_M_contigs7740.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4782bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7740:396..5177- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7740:396..5177- >mRNA_H-canaliculatus_M_contigs7740.1.1 ID=mRNA_H-canaliculatus_M_contigs7740.1.1|Name=mRNA_H-canaliculatus_M_contigs7740.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=861bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7740:396..5177- (Hapterophycus canaliculatus Oshoro7m male)back to top |