mRNA_H-canaliculatus_M_contigs76647.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76647.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76647.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76647.1.1 vs.
Match: PPM-type (phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIH1_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.050e-26
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 1
Query:    4 RVIEEVVGRAFLATDEEFLTTANKPSSGSTATTAMIIGDRFYSFNVGDSRTILCRGGRAEVVSK 195
            RVIE+VV  AFLATDEEFLTTA+KPSSGSTATTAM++GDRFY FNVGDSRTILCR GRAEVVSK
Sbjct:  945 RVIEDVVTAAFLATDEEFLTTASKPSSGSTATTAMVLGDRFYGFNVGDSRTILCRAGRAEVVSK 1008          
BLAST of mRNA_H-canaliculatus_M_contigs76647.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEC0_HETAK)

HSP 1 Score: 77.8 bits (190), Expect = 1.720e-15
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 ARVIEEVVG----RAFLATDEEFLTTANKPSSGSTATTAMIIGDRFYSFNVGDSRTILCRGGRAEVVSK 195
            AR+++E+V     R F  TDE +L T++ P  GSTATT +IIG+RFY+FNVGDSRT+LCR G+  +VS+
Sbjct:  194 ARLLDELVAAGVARCFRRTDEHYLNTSDNPQCGSTATTVLIIGNRFYNFNVGDSRTLLCRNGKVRLVSQ 262          
BLAST of mRNA_H-canaliculatus_M_contigs76647.1.1 vs.
Match: Putative (serine/threonine phosphatase 2C ptc2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP4_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 6.610e-13
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   13 EEVVGRAFLATDEEFLTTANKPSSGSTATTAMIIGDRFYSFNVGDSRTILCRGGRAEVVS 192
            +E +  AF A D+EF+ T+  P +GSTATT +++G R Y  NVGDSRT+LCRGG+  + S
Sbjct:  145 KEAISEAFAAADKEFIATSRLPEAGSTATTCLVLGPRLYMANVGDSRTVLCRGGKVRMAS 204          
BLAST of mRNA_H-canaliculatus_M_contigs76647.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FV88_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.380e-10
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   13 EEVVG---RAFLATDEEFLTTANKPSSGSTATTAMIIGDRFYSFNVGDSRTILCRGGRAEVVS 192
            E V+G    +F+ TD+EF+ TA    +GSTATT +++GDR Y  NVGDSRT+LCR G A  +S
Sbjct:  301 EIVIGALTESFIYTDKEFMRTAGHAQAGSTATTVLLLGDRAYCGNVGDSRTVLCRSGEAVPLS 363          
BLAST of mRNA_H-canaliculatus_M_contigs76647.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CJ68_PYTIN)

HSP 1 Score: 62.4 bits (150), Expect = 8.680e-10
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    4 RVIEEVVGRAFLATDEEFLTTANKPSSGSTATTAMIIGDRFYSFNVGDSRTILCRGGRA 180
            R++EE +  AF  TDEEFLT++ +P +GSTATT    G++ +  NVGDSRT+L R G A
Sbjct:  377 RIVEESLVMAFERTDEEFLTSSERPQAGSTATTVFFAGNQMFVANVGDSRTVLSRRGLA 435          
BLAST of mRNA_H-canaliculatus_M_contigs76647.1.1 vs.
Match: Phosphomannomutase (n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WZ10_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.180e-9
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 ARVIEEVVGRAFLATDEEFLTTANKPSSGSTATTAMIIGDRFYSFNVGDSRTILCRGGRAEVVSK 195
            + ++++ +  AF  TD++FL  +++P +GST TT  I G R +  NVGDSRTIL R GRA  +SK
Sbjct:  514 SNLVQKQIVAAFERTDKDFLKKSDRPQAGSTGTTVFIAGKRLFVANVGDSRTILSRSGRAVALSK 578          
BLAST of mRNA_H-canaliculatus_M_contigs76647.1.1 vs.
Match: PPM-type (phosphatase domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YTM7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.910e-9
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   31 AFLATDEEFLTTANKPSSGSTATTAMIIGDRFYSFNVGDSRTILCRGGRAEVVS 192
            AF  TDEEFL  + +P +GSTATT  + G   +  NVGDSRT+L RGG+AE +S
Sbjct:  100 AFERTDEEFLNESERPQAGSTATTVFVAGKYMFVSNVGDSRTVLSRGGKAERLS 153          
BLAST of mRNA_H-canaliculatus_M_contigs76647.1.1 vs.
Match: Protein-serine/threonine (phosphatase n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9NE84_ARUDO)

HSP 1 Score: 58.9 bits (141), Expect = 5.560e-9
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   31 AFLATDEEFLTT-ANKPSSGSTATTAMIIGDRFYSFNVGDSRTILCRGGRAEVVSK 195
            A+ +TD EFL + +++   GSTA+TA+++GDR +  NVGDSR I+CRGG A  VSK
Sbjct:   60 AYKSTDSEFLESDSSQNQCGSTASTAVLVGDRLFVANVGDSRAIICRGGNAVAVSK 115          
BLAST of mRNA_H-canaliculatus_M_contigs76647.1.1 vs.
Match: Protein-serine/threonine (phosphatase n=2 Tax=Setaria TaxID=4554 RepID=K3Z9N1_SETIT)

HSP 1 Score: 58.9 bits (141), Expect = 6.210e-9
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   31 AFLATDEEFLTT-ANKPSSGSTATTAMIIGDRFYSFNVGDSRTILCRGGRAEVVSK 195
            A+ +TD EFL + +++   GSTA+TA+++GDR +  NVGDSR I+CRGG A  VSK
Sbjct:  101 AYKSTDSEFLESDSSQNQCGSTASTAVLVGDRLFVANVGDSRAIICRGGNAVAVSK 156          
BLAST of mRNA_H-canaliculatus_M_contigs76647.1.1 vs.
Match: Protein-serine/threonine (phosphatase n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1BQK3_9ORYZ)

HSP 1 Score: 58.5 bits (140), Expect = 7.090e-9
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   31 AFLATDEEFLTT-ANKPSSGSTATTAMIIGDRFYSFNVGDSRTILCRGGRAEVVSK 195
            A+ +TD EFL + +++   GSTA+TA+++GDR +  NVGDSR I+CRGG A  VSK
Sbjct:   63 AYKSTDSEFLESDSSQNQCGSTASTAVLVGDRLFVANVGDSRAIICRGGNAIAVSK 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76647.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PPM-type1.050e-2687.50phosphatase domain-containing protein n=2 Tax=Ecto... [more]
Hypothetical1.720e-1555.07protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Putative6.610e-1351.67serine/threonine phosphatase 2C ptc2 n=1 Tax=Ectoc... [more]
Hypothetical3.380e-1052.38protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Uncharacterized8.680e-1052.54protein n=2 Tax=Pythium insidiosum TaxID=114742 Re... [more]
Phosphomannomutase4.180e-946.15n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F... [more]
PPM-type4.910e-955.56phosphatase domain-containing protein n=1 Tax=Phyt... [more]
Protein-serine/threonine5.560e-953.57phosphatase n=1 Tax=Arundo donax TaxID=35708 RepID... [more]
Protein-serine/threonine6.210e-953.57phosphatase n=2 Tax=Setaria TaxID=4554 RepID=K3Z9N... [more]
Protein-serine/threonine7.090e-953.57phosphatase n=1 Tax=Oryza meyeriana var. granulata... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76647contigH-canaliculatus_M_contigs76647:56..250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G1B3
PFAMsFHA,PP2C
Model size195
Max annot lvl2759|Eukaryota
KEGG koko:K01090
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.72e-27
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota
EC3.1.3.16
Descriptionprotein serine/threonine phosphatase activity
Cds size195
COG categoryT
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854104.8253825-CDS-H-canaliculatus_M_contigs76647:55..2501696854104.8253825-CDS-H-canaliculatus_M_contigs76647:55..250Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76647 56..250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76647.1.1prot_H-canaliculatus_M_contigs76647.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76647 56..250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76647.1.1

>prot_H-canaliculatus_M_contigs76647.1.1 ID=prot_H-canaliculatus_M_contigs76647.1.1|Name=mRNA_H-canaliculatus_M_contigs76647.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=65bp
ARVIEEVVGRAFLATDEEFLTTANKPSSGSTATTAMIIGDRFYSFNVGDS
RTILCRGGRAEVVSK
back to top

mRNA from alignment at H-canaliculatus_M_contigs76647:56..250+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76647.1.1 ID=mRNA_H-canaliculatus_M_contigs76647.1.1|Name=mRNA_H-canaliculatus_M_contigs76647.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=195bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76647:56..250+ (Hapterophycus canaliculatus Oshoro7m male)
GCCAGGGTGATCGAGGAAGTCGTTGGCCGAGCCTTCCTGGCAACGGACGA GGAATTCTTGACGACCGCGAACAAGCCTTCGAGCGGAAGCACCGCGACCA CCGCCATGATTATCGGCGACCGGTTTTACAGCTTCAACGTCGGGGACAGC CGGACGATTTTGTGCCGCGGCGGCCGTGCGGAGGTCGTGTCCAAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76647:56..250+

>mRNA_H-canaliculatus_M_contigs76647.1.1 ID=mRNA_H-canaliculatus_M_contigs76647.1.1|Name=mRNA_H-canaliculatus_M_contigs76647.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=195bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76647:56..250+ (Hapterophycus canaliculatus Oshoro7m male)
GCCAGGGTGATCGAGGAAGTCGTTGGCCGAGCCTTCCTGGCAACGGACGA
GGAATTCTTGACGACCGCGAACAAGCCTTCGAGCGGAAGCACCGCGACCA
CCGCCATGATTATCGGCGACCGGTTTTACAGCTTCAACGTCGGGGACAGC
CGGACGATTTTGTGCCGCGGCGGCCGTGCGGAGGTCGTGTCCAAG
back to top