mRNA_H-canaliculatus_M_contigs7594.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7594.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7594.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7594.1.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY76_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 4.190e-71
Identity = 145/298 (48.66%), Postives = 175/298 (58.72%), Query Frame = 1
Query:    7 AGYTYGNWSGASSGESDWAVVKLDADGTEAWRYQAG------------------------------TDGQDQTKGIAMAEDGSVVVVGATRGDWNG-ANGSFDFAAFRLDADGTEVWRYQEGTEKEDYLSAATMVDGDGSVVMGGYTTGGFSELS-LGDNDFVAIKLNSSDSTEIWRYQDGSSETDMVYASAATEDEGVVLAGFTDGTWSGDNAGGSDFAAVKLDSDGVEVWRY-----QDGTSAHDTVREVAVQADGSIILAGTTDGDWSGLNXXXXXXXXALISLSTDGEENWRWQ 789
            AG T G W G + G +D A +KLDA+G E WRYQ G                              T   D    +AMA DGSV+ VG T G W+G ANG  DFAAFRLD +G E+WRYQ+GTE+ED ++AA M DGD SVVM G T   FS  S  G  D V +KLN++  TEIWRYQDG+S  D +   A  ED G+V+AG TDG WSG+NAG  DFAAVKL S    +  Y     QDGT+ +D +  VA+QADGS+IL G T GDW G N         +++LS DGEE WRWQ
Sbjct:   32 AGATEGAWDGTNFGGNDMAAIKLDAEGNELWRYQDGSVVLAGHQNLDFYVTXXXXXXXXXXXXXXXTPEDDIPYWMAMAGDGSVICVGQTYGSWDGDANGDSDFAAFRLDGNGEEIWRYQDGTEEEDLMTAAAMGDGDSSVVMAGQTYVNFSGASNSGSADIVVVKLNATSGTEIWRYQDGTSVYDKLGLIAVAEDNGIVVAGSTDGIWSGENAGLDDFAAVKLSSFSRLIIMYAHVLPQDGTAENDFLDGVAIQADGSVILGGNTVGDWDGANAGERDFI--MVALSADGEELWRWQ 327          
BLAST of mRNA_H-canaliculatus_M_contigs7594.1.1 vs.
Match: von (Willebrand factor type D domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY5_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 5.790e-58
Identity = 115/285 (40.35%), Postives = 160/285 (56.14%), Query Frame = 1
Query:    7 AGYTYGNWSGASSGESDWAVVKLDADGTEAWRYQAGTDGQDQ------------------TKGIAMAEDGS--VVVVGATRGDWNGAN--GSFDFAAFRL-DADGTEVWRYQEGTEKEDYLSAATMVDGDGSVVMGGYTTGGFSELSLGDN-DFVAIKLNSSDSTEIWRYQDGSSETDMVYASAATEDEGVVLAGFTDGTWSGDNAGGSDFAAVKLDSDGVEVWRYQDGTSAHDTVREVAVQADGSIILAGTTDGDWSGLNXXXXXXXXALISLSTDGEENWRWQ 789
            AG T G+W+  + G+ D+  VK   DGTE WR QAGT   D                     G + A D S  +++ G T+G W+GA   G  DF A  +   DG+++W +Q+GTE++D L       G  +VV+ G T G +++ + G+  DF A+KL + D +EIWR+QDGSS  D + + AA ED+ VVLAG+T+G+  GDNAG +D A VKLD+DG  +WR+Q GT+  D     AV  DGSI++AG T G W G           ++ L  DG E W WQ
Sbjct:   36 AGRTQGDWAETNEGDFDFMAVKFAQDGTEQWRLQAGTPETDTFHDAAAVTSSPSTVANMAATGTSAAGDESTAIILAGFTKGGWDGAASAGGSDFVAVSVASGDGSQLWSWQDGTEEDDVLMGVVERGGGSAVVLAGRTGGDWADANAGEGTDFAAVKLEAGDGSEIWRFQDGSSGDDTLKSVAAAEDDTVVLAGYTEGSLGGDNAGETDCAVVKLDADGGVLWRWQGGTAESDVCSAAAVAEDGSIVVAGYTVGSWGGSEANAGEDDLVVVKLDKDGNELWHWQ 320          
BLAST of mRNA_H-canaliculatus_M_contigs7594.1.1 vs.
Match: PEGA (domain family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU1_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 4.690e-57
Identity = 128/273 (46.89%), Postives = 158/273 (57.88%), Query Frame = 1
Query:    7 AGYTYGNWSGASSGESDW----AVVKLDADGTEAWRYQAGTDGQDQTKGIAMAEDG-SVVVVGATRGDWNGAN-GSFDFAAFRLDADGTEV-WRYQEGTEKEDYLSAATMVDGDGSVVMGGYTTGGFSELSLGDNDFVAIKLNSSDSTEIWRYQDGSSETDMVYASAATED-EGVVLAGFTDGTWSGDNAGGSDFAAVKLDSDGVEVWRYQDGTSAHDTVREVAVQADGSIILAGT---TDGDWSGLNXXXXXXXXALISLSTDGEE-NWRWQ 789
            AG ++G W+G ++  SD     A  KLDADG   W++Q      D     A A +G SVV  G   G W G   G  DF A  LDAD  E+ W++Q+G+E  D +  AT+ D   SVVM GYT+G FS ++ G NDFVAIKLN +D +E+WR+QDG+ E D + A A T D  G VL G T G W GDNAG  DFA V LD DG E WR+QDGT+  + +  VAVQ DGSI+LAG    T GD S             + L  DGEE  WRWQ
Sbjct:   32 AGLSFGLWNGTNADTSDASLRPAATKLDADGNILWKWQ-----HDINAFAAAAGEGRSVVTAGFASGGWEGTGLGFVDFTAVSLDADSGELLWKWQDGSEGFDVIYGATLADEGESVVMAGYTSGNFSGVNAGSNDFVAIKLNFTDGSEVWRWQDGTDEWDQIGAVAETADGTGFVLVGSTQGDWDGDNAGNGDFAVVMLDVDGNESWRWQDGTTEQEWLVGVAVQDDGSILLAGQQMETTGDES--------VFFTALKLQADGEEVTWRWQ 291          
BLAST of mRNA_H-canaliculatus_M_contigs7594.1.1 vs.
Match: Hemolysin-type (calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH5_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 1.360e-54
Identity = 114/267 (42.70%), Postives = 161/267 (60.30%), Query Frame = 1
Query:    7 AGYTYGNWSGAS--SGESDWAVVKLDADGTEAWRYQAGTDGQDQTKGIAMAEDGSVVVVGATRGDWNG--ANGSFDFAAFRLDADGTEVWRYQEGTEKEDYLSAATMVDGDGSVVMGGYTTGGFSELSLGDNDFVAIKLNSSDSTEIWRYQDGSSETDMVYASAATEDEG-VVLAGFTDGTWSGDNAGGSDFAAVKLDSDGVEVWRYQDGTS-AHDTVREVAVQADGSIILAGTTDGDWSGLNXXXXXXXXALISLSTDGEENWRWQ 789
            AG T G+  G +  +G  D AV KLD+DG   W +Q GT G+D     A  +DG VVV G + G  +G  + G  DF A + D+DGTE WR+QEGTEK++ +S  +    DG+VV+ G T G + E + G    VA+KL+ SD + IWRYQ G     +V   AA+  +G +V+ G TDG W G+  G +DF +V LD DG E+WR+QDG+  +  +   VA  +DGS++LAGTTDGD++G N        A++ L+ +G  +W WQ
Sbjct:   36 AGKTTGSLDGITLNAGGEDMAVGKLDSDGVLLWSWQEGTTGEDTMSDAAATDDGGVVVGGYSNGTLSGVVSEGLGDFIAIKFDSDGTEEWRWQEGTEKDEVISTCSKT-ADGNVVLTGLTQGDWEETNTGLWALVAVKLDVSDGSVIWRYQAGVPSYSVVSRGAASRADGSIVIGGTTDGDWDGELTGYADFFSVALDEDGSELWRFQDGSLFSISSAWGVAALSDGSVVLAGTTDGDYAGTNAGAQDF--AVVKLTEEGVLDWTWQ 299          
BLAST of mRNA_H-canaliculatus_M_contigs7594.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC7_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 4.030e-52
Identity = 103/240 (42.92%), Postives = 148/240 (61.67%), Query Frame = 1
Query:   88 TEAWRYQAGTDGQDQTKGIAMAEDGSVVVVGATRGDWN--GANGSFDFAAFRLDADGTEVWRYQEGTEKEDYLSAATMVDGDGSVVMGGYTTGGFSELSLGDNDFVAIKLNSSDSTEIWRYQDGSSETDMVY----ASAATEDEGVVLAGFTDGTWSGDNAGGSDFAAVKLDSDGVEVWRYQDGTSAHDTVREVAVQADGSIILAGTTDGDWSGLNXXXXXXXXALISLSTDGEENWRWQ 789
            TE WR+Q G    +  KG+A   +G++V VG T GD+    + G FDF A ++  DG  +W +Q+GT  ED L+ A +V+ DGSVV+ G T G +   + G  DF A+KL+ S +  +W++Q G+S+ +++     A++A+  E VVL G T+G+W+  NAGG DF A KLD+DG E+W +QDGT A DT + VAV  DGS+ LAG T+GDW+  N        A+  L  +G   WRWQ
Sbjct:    3 TEDWRWQGGGPANENMKGVAAGGNGTIVAVGRTDGDFFPFASLGGFDFLAVKIGPDGLYLWHWQDGTSDEDNLNDA-VVNSDGSVVLAGSTEGDWGGTNAGLGDFAAVKLDESGAV-LWKWQSGTSDDELLVGITSANSASGSE-VVLVGRTEGSWAASNAGGYDFCAAKLDADGNELWSWQDGTGADDTTKAVAVDGDGSVFLAGYTEGDWNQPNEGETDF--AVTKLEANGTLAWRWQ 237          
BLAST of mRNA_H-canaliculatus_M_contigs7594.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF09_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.680e-51
Identity = 109/266 (40.98%), Postives = 143/266 (53.76%), Query Frame = 1
Query:   64 VVKLDADGTEAWRYQAGTDGQDQTKGIAMA--------------------EDGSVVVVGATRGDWNGAN--GSFDFAAFRL-DADGTEVWRYQEGTEKEDYLSAATMVDGDGSVVMGGYTTGGFSELSLGDN-DFVAIKLNSSDSTEIWRYQDGSSETDMVYASAATEDEGVVLAGFTDGTWSGDNAGGSDFAAVKLDSDGVEVWRYQDGTSAHDTVREVAVQADGSIILAGTTDGDWSGLNXXXXXXXXALISLSTDGEENWRWQ 789
             VK   DGTE WR QAGT   D     A A                    E  ++V+ G T+G WNGA   G  DF A  L   DG+ +W +Q+GTE++D L       G  +VV+ G T G +++ + G+  DF A+KL + D +EIWR+QDGSS  D + + AA ED+ VVLAG+TDG+  G NAG +D   VKLD+DG  +WR+Q GT+  D      V  DGSI+LAG T G W G           ++ L  DG E W WQ
Sbjct:    2 AVKFAQDGTEQWRLQAGTPETDTFHDAAAASGSPSTVATMAATGTSAAGDESTAIVLAGFTKGGWNGAASAGGSDFVAVSLASGDGSRLWSWQDGTEEDDVLVGLVERGGGSAVVLAGRTGGDWADANAGEGTDFAAVKLEAGDGSEIWRFQDGSSGDDTLKSVAAAEDDTVVLAGYTDGSLGGVNAGETDCTVVKLDADGGVLWRWQGGTAESDVCSATVVAEDGSIVLAGYTVGSWDGSEANAGEEDLVVVKLDKDGNELWHWQ 267          
BLAST of mRNA_H-canaliculatus_M_contigs7594.1.1 vs.
Match: Hemolysin-type (calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH4_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 2.960e-47
Identity = 99/247 (40.08%), Postives = 146/247 (59.11%), Query Frame = 1
Query:   61 AVVKLDADGTEAWRYQAGTDGQDQTKGIAMAEDGSVVVVGATRGDWNG--ANGSFDFAAFRLDADGTEVWRYQEGTEKEDYLSAATMVDGDGSVVMGGYTTGGFSELSLGDNDFVAIKLNSSDSTEIWRYQDG-SSETDMVYASAATEDEGVVLAGFTDGTWSGDNAGGSDFAAVKLDSDGVEVWRYQDGTS-AHDTVREVAVQADGSIILAGTTDGDWSGLNXXXXXXXXALISLSTDGEENWRWQ 789
            A  KLD+DG   W +Q GT  +D     A  +DG VV  G   G  NG  + G  DF A + D+DGTE WR+Q+GTE ++ ++  +    DG+VV+ G T G + E + G    VA+KL+ +D + IW+YQ G  S++ +   SA+  D  +V+ G TDG W G+  G +DF  V LD DG E+WR+QDG+  +  +   VA  +DGS++LAGTTDG+++G N        A++ L+ +G  +W WQ
Sbjct:    2 AAGKLDSDGAVLWSWQEGTTDEDALSDAAATDDGGVVFAGFFNGTLNGVASEGLGDFIAIKFDSDGTEEWRWQDGTEMDEGITTCSKT-ADGNVVLTGSTLGDWVETNTGLWALVAVKLDVTDGSVIWQYQAGVPSQSVVSRGSASRADGSIVIGGVTDGDWDGELTGFTDFFTVALDEDGSELWRFQDGSLLSSSSAWGVAALSDGSVVLAGTTDGNYAGTNAGAQDF--AVVKLTEEGVLDWTWQ 245          
BLAST of mRNA_H-canaliculatus_M_contigs7594.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T2_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 3.160e-46
Identity = 105/267 (39.33%), Postives = 154/267 (57.68%), Query Frame = 1
Query:    7 AGYTYGNWSGAS--SGESDWAVVKLDADGTEAWRYQAGTDGQDQTKGIAMAEDGSVVVVGATRGDWNG--ANGSFDFAAFRLDADGTEVWRYQEGTEKEDYLSAATMVDGDGSVVMGGYTTGGFSELSLGDNDFVAIKLNSSDSTEIWRYQDGSSETDMVYASAATEDEG-VVLAGFTDGTWSGDNAGGSDFAAVKLDSDGVEVWRYQDGTS-AHDTVREVAVQADGSIILAGTTDGDWSGLNXXXXXXXXALISLSTDGEENWRWQ 789
            AG T G+  G +  +G +D A  KLD+DG   W +Q G+   D     A  +DG VV  G   G  NG  + G  DF A + D+DGTE WR+Q+GTEK++ +   +    DG+VV+ G T G + E + G    VA+KL+ +D + IW+YQ G     +V   AA+  +G +V+ G TDG W G+  G +DF +V L+ DG E+WR+QDG+  +  +   VA  +DGS++LAG TDGD++  N        AL+ L+ +G  +W WQ
Sbjct:   39 AGTTEGSLDGITFNAGGTDMAAGKLDSDGAVLWYWQEGSTEDDTLADAAATDDGGVVFAGFYNGTLNGVPSEGLGDFFAIKFDSDGTEEWRWQDGTEKDEVILTCSKT-ADGNVVLTGMTQGDWVETNTGLWALVAVKLDVTDGSVIWQYQAGVPSYSVVSRGAASRADGSIVIGGSTDGDWDGELTGYADFFSVALNEDGSELWRFQDGSEFSISSAWGVAALSDGSVVLAGVTDGDYAETNAGEQDF--ALVKLTEEGVLDWTWQ 302          
BLAST of mRNA_H-canaliculatus_M_contigs7594.1.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 5.900e-45
Identity = 100/228 (43.86%), Postives = 141/228 (61.84%), Query Frame = 1
Query:  118 DGQDQTKGIAMAEDGSVVVVGATR-GDWNGAN-GSFDFAAFRLDADGTEVWRYQEGTEKEDYLSAATMVDGDGSVVMGGYTTGGFSELSLGDNDFVAIKLNSSDSTEIWRYQDGSSETDMVYASAATEDEGVVLAGFTDGTWSGDNAGGS-DFAAVKLDSDGVEVWRYQDGTSA-HDTVREVAVQADGSIILAGTTDGDWSGLNXXXXXXXXALISLSTDGEENWRWQ 789
            D   +  G+A ++ GSVV VG    G+W   + G +DF A+++D DG  +W++Q+GT   D L A    D +GSV+M G T+  FS  S+G  DFVAIKL+S  +T +W +QDG+S +D + A+AAT D  VVLAG+T G WSG   G   DFAAVKLD++G EVWR+Q G    ++ +  V+VQ DG+++LAG T G     +        A + L  DG+E WRW+
Sbjct:   97 DANCRAYGVAASDSGSVVAVGTINDGEWATPSVGGYDFIAYKVDGDGNLLWKWQDGTIGFDILWAVVSADEEGSVIMAGMTSLDFSGPSVGSLDFVAIKLDSGGTT-LWTWQDGTSSSDEIQAAAATGDGFVVLAGYTFGEWSGGLTGEECDFAAVKLDANGTEVWRWQGGYEVEYNVIYAVSVQEDGTVLLAGRTGGSQVMSDKRVGSSDIATVMLGADGQEIWRWK 323          
BLAST of mRNA_H-canaliculatus_M_contigs7594.1.1 vs.
Match: Hemolysin-type (calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A3_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 2.720e-44
Identity = 97/232 (41.81%), Postives = 141/232 (60.78%), Query Frame = 1
Query:  112 GTDGQDQTKGIAMAEDGSVVVVGATRGDWNG--ANGSFDFAAFRLDADGTEVWRYQEGTEKEDYLSAATMVDGDGSVVMGGYTTGGFSELSLGDNDFVAIKLNSSDSTEIWRYQDGSSETDMVY----ASAATEDEGVVLAGFTDGTWSGDNAGGSDFAAVKLDSDGVEVWRYQDGTSAHDTVREVAVQADGSIILAGTTDGDWSGLNXXXXXXXXALISLSTDGEENWRWQ 789
            G    +  KG+A  ++G+++ VG T GD+    + G FDF A +L  DG   W +Q+GT  ED L+ A +V+ DGSVV+ G T G +S  + G  D  A+KL+ S +  +W++Q G+S+ +++     A++A+  E VVL G T+G+W+  N GG DF A KLD+DG E+W +QDGT A DT + VAV  DGS+ LAG T+GDW+  N        A+  L  +G   WRWQ
Sbjct:  189 GGPANENMKGVAAGDNGTIIAVGRTDGDFFPFVSLGGFDFLAVKLGPDGVYSWHWQDGTSDEDNLNDA-VVNSDGSVVLAGSTEGDWSGTNAGLGDLAAVKLDESGAV-LWKWQSGTSDDELLVGITSANSASGSE-VVLVGRTEGSWAASNVGGYDFCAAKLDADGNELWSWQDGTDADDTTKAVAVDGDGSVFLAGYTEGDWNQPNEGETDF--AVTKLDANGTLAWRWQ 415          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7594.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Protein4.190e-7148.66kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
von5.790e-5840.35Willebrand factor type D domain protein n=1 Tax=Ec... [more]
PEGA4.690e-5746.89domain family protein n=1 Tax=Ectocarpus siliculos... [more]
Hemolysin-type1.360e-5442.70calcium-binding region n=1 Tax=Ectocarpus siliculo... [more]
Uncharacterized4.030e-5242.92protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.680e-5140.98protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hemolysin-type2.960e-4740.08calcium-binding region n=1 Tax=Ectocarpus siliculo... [more]
Uncharacterized3.160e-4639.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Protein5.900e-4543.86kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
Hemolysin-type2.720e-4441.81calcium-binding region n=1 Tax=Ectocarpus siliculo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7594contigH-canaliculatus_M_contigs7594:818..5113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRF5
Preferred nameRIPK4
PFAMsAnk_2,Ank_3,Ank_4,Ank_5,Pkinase,Pkinase_Tyr
Model size807
Max annot lvl2759|Eukaryota
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
Exons5
Evalue1.14e-56
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
EC2.7.11.1
Descriptionprotein kinase activity
Cds size807
COG categoryKLT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854097.0221577-CDS-H-canaliculatus_M_contigs7594:817..9251696854097.0221577-CDS-H-canaliculatus_M_contigs7594:817..925Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7594 818..925 +
1696854097.0366426-CDS-H-canaliculatus_M_contigs7594:2803..29681696854097.0366426-CDS-H-canaliculatus_M_contigs7594:2803..2968Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7594 2804..2968 +
1696854097.0537467-CDS-H-canaliculatus_M_contigs7594:3527..37011696854097.0537467-CDS-H-canaliculatus_M_contigs7594:3527..3701Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7594 3528..3701 +
1696854097.067776-CDS-H-canaliculatus_M_contigs7594:3904..40721696854097.067776-CDS-H-canaliculatus_M_contigs7594:3904..4072Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7594 3905..4072 +
1696854097.0817564-CDS-H-canaliculatus_M_contigs7594:4921..51131696854097.0817564-CDS-H-canaliculatus_M_contigs7594:4921..5113Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7594 4922..5113 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7594.1.1prot_H-canaliculatus_M_contigs7594.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7594 818..5113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7594.1.1

>prot_H-canaliculatus_M_contigs7594.1.1 ID=prot_H-canaliculatus_M_contigs7594.1.1|Name=mRNA_H-canaliculatus_M_contigs7594.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=269bp
MHAGYTYGNWSGASSGESDWAVVKLDADGTEAWRYQAGTDGQDQTKGIAM
AEDGSVVVVGATRGDWNGANGSFDFAAFRLDADGTEVWRYQEGTEKEDYL
SAATMVDGDGSVVMGGYTTGGFSELSLGDNDFVAIKLNSSDSTEIWRYQD
GSSETDMVYASAATEDEGVVLAGFTDGTWSGDNAGGSDFAAVKLDSDGVE
VWRYQDGTSAHDTVREVAVQADGSIILAGTTDGDWSGLNAGDSNGDWALI
SLSTDGEENWRWQVTRCV*
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mRNA from alignment at H-canaliculatus_M_contigs7594:818..5113+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7594.1.1 ID=mRNA_H-canaliculatus_M_contigs7594.1.1|Name=mRNA_H-canaliculatus_M_contigs7594.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4296bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7594:818..5113+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCACGCAGGTTACACTTATGGGAATTGGAGTGGGGCGTCCTCAGGAGA AAGTGATTGGGCGGTAGTCAAGCTGGACGCGGATGGGACGGAAGCTTGGC GGTATCAGGTGGGAGGCTTCTTTTTTAAATCTTTTTCAGGCATATCCGTT GGTCTTGCCGCGCTGCTCTAACGTTGGCCGTGTCTCGTGGTCGATGCCCA TGGGCTCGAAGGTGGGGGTGGGAGATGCTCAAGCAATATGCTGTCAACGA GAAGCCCACCTCAATCAAGACGAGCCAGCTGTCGCCACGTTCAACCTGGT CTTTATGACAGGGCGGAAAGGGTCGATGTGTAGACCATCAGGTTCACAAA GCGTAAAGACTACTTCGTTCCAAATGTACTCGTCGTCACTTAGCAGGCAA CTTGCCACTCCTTTATTAGATCGGTAGATTGGGTATGCTCACCGACTGTC GTGCGTACGCCACCTGAACACGCCATCGCATGTTTCTCCGACGAAATCCG TTTATTCGCCTTTCAAACACTTGATTCTCAACAAAATCAAGGGCGGTCGT AGAACTTTCCCGTCTTGAAAGAAACTGGGGATCACATGAAACGTCCTCAC CGCAGAACGCTGTGTTTAGGCGAGGTTATCCAACAAAGATTTAAACCCAC ATTCCACTCACTCTTTCGCCACAAGTCGACGACTTTCGGACATCAGCGGT AGAAAACTCTGGTGTATTTTCTCGCTTCAATCGTTTTTTTTCGGAGGTAT GTGCATAAATTCGATTCGATGTGCGGTCGCCATCACACGTATCATTTATG CCTCTAGGGTGCGTTCGTGCTACCTGAGCGCTACTGAGAGCAAGTGTGGA TAAGAGGTCCGGATAGATGGGTGTGTGAAGCAGAACTAACTTTTTTCACA TCCATCAACCTGGAGGCGTTTTGCGCTGACGCGTAGCCCGATAAGGCGCA ATTTCTAGATTTTACTATGTAGACGCACATATTTGTCCAACTAGCCTAAC TTCATGATGGAGTACTTTTGCACCGTGCAGTAAAGTGGTGCTCGAGCTGG CGAATAAATACACAGAACCCGACAAAGGTTTGAAACCACTGTGGCCTCCT TCAAAGCCATTATTGCCTCGTTAACCTTAAGTCGTTTTCACTCCACCCAT TGGAGAAATACCCAGAATAAAGCCGATTCGTCGCGGAATAAGTTATTCGA GCACCAAGAGTTATGGATGGATACTCGAATTCGTCATCCACTGAGATCTA GTTGATTCCTAAGAGCATTCTCGCTTGCAAGCCTAACGACGTGTGTGTCA TTCGACTCACTTTTCTGTGTTTGTTACCTAGCGTCAAGCCAAACTCACAA ATGAACCACATGGCATGCAACTCCTCAACAGATCTCACTACGGTTTCCGC GCTTGACTCCCCTCCCCCGCCTTCTGCATTGTCGTCTCCACTTGAACAGG GCGGAACTTCGGGAATGGATTCTTTTACCGCGGCGGCCGTGGACCAGCAG AATGGATCAGTGGTGTTGGCGGGGCAAATGTCGAACTTCGTCGCGAGTAC TGACACAACTTCTGGTAGTTACGCAGTCTTGAGGATTGATGCAGGGGGGA CCGTCCTGTGGGAGTTTCAGGTGACGTCACAGCAAAAAATTTGCTAGCGC CAAGATCTCGCAGACGTCTAAAATCGTGCAGTGGCACGCTCGTTTCGGCA GACAAATGTTTTAGCTGGGTCCACGGGTCCACACCAGGCTTGAAGAAGCA CGTTCGGCCACAGACCCAATGTTTGGTGCTATTACTTGCAAAGTAACCCG AAGATGTGAGCAGCGGGGTGATTCGCTTCACCTGGCTGACTGTGGAGTGT GTGGTCTGTGATTTGACGCTTCGCCGCGGGTGAAAATGTTTCTCGCGCTG GGAATCCGGAGGCATATGATAACCTTTTCCTCAACCATCAACGAATTCGG CTCGACCCGATATCGTCCACGCTCACTGATGGACAGGCCGGCACCGACGG ACAGGACCAGACCAAAGGGATCGCCATGGCGGAAGATGGTTCTGTGGTTG TTGTCGGTGCTACCAGGGGAGACTGGAATGGAGCGAACGGTAGCTTCGAT TTCGCCGCGTTTCGGCTCGACGCTGATGGAACGGAGGTTTGGCGTTATCA GGTGGGGTGTTCCCAATGTCTGCCGGTTATGGACGTCGTGGTGATCCCGA CTAATCTCTGTATCGTTGTTGCAGCAAAACAACCCGATCGCAATCGTCAA CTATTCGGAGGTTATACGGCAGGCTCGAGAGTACAAAACAATCAGCGTCG GCTTTTTCCGGACGTTTTGTCTCGAAGACGGTACACTCGATTTTCTATCG GAAGAGGAATGGCGGCTTCTAGCGGCGGACAGAGCGCAAGCGCAAAAACA ACGGGAATGTTTTAAAAAGGAAAGGCGTCTTCCGGCCCGACCCGAGGTTG GGTGGGATTTTGGAAGTTAACCTGTTTCCTCTTAGTGTACAAATCGGCGC TCTGTCTGCAATCCAATTCTGCACGATGACCTGTTGCTCACGTAGATTCC ATGGGATTGACGTCACGCGTACACCGGGTTGTATACAGCTCGGCTCGGGC TGACACAGCCTCCGATTGTGACGGATTAAGGATCCGGGCTTGCCCGTTAG ATCTCCGACCACCGTCAACATCTCTGTTGGCTTTTCGGTGCCCCCGCCCC CCTCCTCCAGGAAGGAACAGAAAAAGAGGACTATCTTTCCGCTGCTACCA TGGTGGACGGTGATGGGTCGGTGGTCATGGGCGGGTACACAACAGGTGGC TTCAGCGAGTTGTCCCTTGGGGACAATGATTTTGTGGCCATCAAACTCAA TTCGTCGGACAGCACCGAAATCTGGCGGTATCAGGTACGCGTCCGAGGGC ACTGGTACGAAGGTCCTGATGCTCCTCCGGATATTTGGTAGGAGATTGAT CGTCCTGACTATCAGGCGCATCAGTCCATGCTTTGGGCTGTGGCCACGGA TAACGCCAACTTGTTCGAATAGTTGGCGGGCAATTTCAACACGATGCTAT TTGATTCCGTCGCCCTTTTCGTCATGTGCTGGAAAAGGATGGGTCAAGCG AAACGGACATGGTGTATGCTTCAGCTGCGACAGAGGACGAGGGCGTCGTG TTAGCGGGCTTTACCGACGGAACCTGGAGTGGTGACAACGCAGGTGGATC AGACTTCGCCGCCGTGAAGTTGGACTCTGACGGCGTCGAAGTTTGGAGGT ATCAGGTACGGGGTGGCTTTCTCTCCGTTATACTTGCAGCGTCTCCTGGG CTGCAGGCCCACGGGTTTAAAGAAACATCAGTCTACCCTGTGCACGGCTT GCTCGATGCTGTGCGAGGTTTCAGGCAGGGGAGACGCAGAAACGCCCGTG AAAGGCAGCTCTGTTTTTTCGTTGGGTGACAACACTGCTCCATTTCGTGA TGCTGGGCGCTAATGCGACAATCTCGTGTACATAATCAGGAGGATAGTGA GTTGCCCAGACCTGTGTTGTCTCCATGCCTGCCCGTTTCTTCGGGTTCCT TTCACTTTCGTAGGGCGAAAGTTGAAGATACTGGAAAGTGCGGCATCGCG ATAGAAGCTCTTTGTTTCGGTGCAGGTATCCCTCTACAAAGCTACCTGCC TTCGTTGTCTCTGGCATTTAGCGCCCTTCTCTCTCCCAGTAATAGTGCCT ACCCTTGAGGAAAGTATAGGGGCTTGGCGCACGCATTCTGTCGGACATTT CGAACATACCGTCGTGACATATTTATTCACGACATCGAGCGAAATACGAC AGGCGCTGTTGGCGGAAAAATAACGTTGTGCGCCGATGTTTTATGAGACC CCGGTGCGTTGCAGCGTTATCTCGGCCAATTTTCGTTGTGTATGCAGTAA AGGGACATGGCTTCAAAGACAAACATCGCCGTAGGCCAAATGACCATTTT GCCAGCAATCATACAACGGCCAGCTGTACAAGTTCTCTCGCAGCAGTTAC CTCTTTTTCGTCTGTAGCCCACACGTAGTACTACTGAATCTCTGAAGTCC ACGTTATCCAGCGTTTTCCGTCTTTCCTTTGCACGCCCTCAATTAACCGG GCAGGATGGCACAAGCGCACACGATACGGTGAGAGAGGTAGCGGTGCAAG CCGACGGCTCTATTATTCTCGCAGGTACTACAGATGGCGATTGGAGCGGC CTGAACGCCGGAGACAGTAATGGCGACTGGGCTCTTATATCGCTGTCGAC AGACGGCGAAGAAAACTGGCGCTGGCAGGTGACACGCTGTGTATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7594:818..5113+

>mRNA_H-canaliculatus_M_contigs7594.1.1 ID=mRNA_H-canaliculatus_M_contigs7594.1.1|Name=mRNA_H-canaliculatus_M_contigs7594.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=807bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7594:818..5113+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCACGCAGGTTACACTTATGGGAATTGGAGTGGGGCGTCCTCAGGAGA
AAGTGATTGGGCGGTAGTCAAGCTGGACGCGGATGGGACGGAAGCTTGGC
GGTATCAGGCCGGCACCGACGGACAGGACCAGACCAAAGGGATCGCCATG
GCGGAAGATGGTTCTGTGGTTGTTGTCGGTGCTACCAGGGGAGACTGGAA
TGGAGCGAACGGTAGCTTCGATTTCGCCGCGTTTCGGCTCGACGCTGATG
GAACGGAGGTTTGGCGTTATCAGGAAGGAACAGAAAAAGAGGACTATCTT
TCCGCTGCTACCATGGTGGACGGTGATGGGTCGGTGGTCATGGGCGGGTA
CACAACAGGTGGCTTCAGCGAGTTGTCCCTTGGGGACAATGATTTTGTGG
CCATCAAACTCAATTCGTCGGACAGCACCGAAATCTGGCGGTATCAGGAT
GGGTCAAGCGAAACGGACATGGTGTATGCTTCAGCTGCGACAGAGGACGA
GGGCGTCGTGTTAGCGGGCTTTACCGACGGAACCTGGAGTGGTGACAACG
CAGGTGGATCAGACTTCGCCGCCGTGAAGTTGGACTCTGACGGCGTCGAA
GTTTGGAGGTATCAGGATGGCACAAGCGCACACGATACGGTGAGAGAGGT
AGCGGTGCAAGCCGACGGCTCTATTATTCTCGCAGGTACTACAGATGGCG
ATTGGAGCGGCCTGAACGCCGGAGACAGTAATGGCGACTGGGCTCTTATA
TCGCTGTCGACAGACGGCGAAGAAAACTGGCGCTGGCAGGTGACACGCTG
TGTATGA
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