mRNA_H-canaliculatus_M_contigs75606.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75606.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75606.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Light (harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCR7_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 2.070e-35
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 1
Query:    1 GKMTMDNMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGVPFHA 207
            GKMTMDNMHEDG  PG+FGFDP+ L+ KPA VREKYQLQEIKNGRLAMSAIGGL+HQSLLL GGVPFHA
Sbjct:  166 GKMTMDNMHEDGNEPGDFGFDPMMLAKKPADVREKYQLQEIKNGRLAMSAIGGLIHQSLLLGGGVPFHA 234          
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Chlorophyll (a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.020e-22
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 GKMTMDNMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGVPFH 204
            GKMTM +MH DGQ PG+FGFDPL +S  PA + + YQL EIKNGRLAM AI GL+HQS++   GVPF+
Sbjct:  102 GKMTMMDMHADGQTPGDFGFDPLNVSKDPAKLAQ-YQLSEIKNGRLAMMAISGLIHQSIITGHGVPFN 168          
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Light-harvesting (complex I chlorophyll a/b binding protein 4 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JGJ4_FISSO)

HSP 1 Score: 75.9 bits (185), Expect = 2.410e-15
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   19 NMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGVPFHA 207
            NM+E  +VPG+FGFDPL L  K A+ R++ QL+E+KNGRLAM AIGG+V QS +   G P+ A
Sbjct:  141 NMNEFDRVPGDFGFDPLNLYPKEAAKRKEMQLKELKNGRLAMVAIGGMVAQSAITGNGFPYLA 203          
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTR2_PORUM)

HSP 1 Score: 74.7 bits (182), Expect = 8.280e-15
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 GKMTMDNMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLLLH 186
            GK++ D+M EDG++PG FGFDPL L     + ++K +L E+KNGRLAM  IGG++H + + H
Sbjct:  136 GKLSYDDMFEDGRIPGNFGFDPLGLYKGTPAQKKKLELAEVKNGRLAMIGIGGVIHSNFIYH 197          
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Protein (fucoxanthin chlorophyll a/c protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G502_PHATC)

HSP 1 Score: 73.9 bits (180), Expect = 1.400e-14
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1
Query:   19 NMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGVPF 201
            NM+E  +VPG+FGFDPLKL  K A+ +E+ QL+E+KNGRLAM AIGG+V  S +   G P+
Sbjct:  145 NMNEFDRVPGDFGFDPLKLYPKDAAKQEQMQLKELKNGRLAMVAIGGMVTGSAITGHGFPY 205          
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Light-harvesting (complex protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VTV2_GALSU)

HSP 1 Score: 71.6 bits (174), Expect = 1.500e-13
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 GKMT-MDNMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGV 195
            GKMT +D   +  + PG+FGFDPL L   P + R++Y++ EIKNGRLAM A+GG +H  LL H GV
Sbjct:  150 GKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQA-RKRYEVAEIKNGRLAMLAVGGFIHHMLLTHQGV 214          
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Light-harvesting (protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q9FDZ6_GALSU)

HSP 1 Score: 70.9 bits (172), Expect = 3.030e-13
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    1 GKMT-MDNMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGV 195
            GKMT +D   +  + PG+FGFDPL L   P + R +YQ+ EIKNGRLAM A+GG +H   L H GV
Sbjct:  149 GKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQT-RRRYQVAEIKNGRLAMLAVGGFIHHMFLTHQGV 213          
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MUX0_9CRYP)

HSP 1 Score: 70.5 bits (171), Expect = 4.360e-13
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 GKMTMDNMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGG 192
            GK+T  +M EDG+ PGEFGFDPL     P + + +Y+L EIKNGRLAM AIGG+ H   L   G
Sbjct:  141 GKITPVDMFEDGRKPGEFGFDPLGFGKNPDAFK-RYELAEIKNGRLAMIAIGGMTHHYFLTGKG 203          
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Fucoxanthin-chlorophyll (a-c binding protein A, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPQ1_9FLOR)

HSP 1 Score: 68.9 bits (167), Expect = 1.370e-12
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 GKMTMDNMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLL 180
            GK+T  NM EDG VPGE GF+P+ L      + E+ +LQEIKNGRLAM  +GG++H  LL
Sbjct:  143 GKITYVNMFEDGAVPGELGFNPMGLK-----ITERVKLQEIKNGRLAMVGVGGVIHSMLL 197          
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Light-harvesting (protein n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q8RW55_GALSU)

HSP 1 Score: 67.8 bits (164), Expect = 3.940e-12
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   34 GQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGG 192
            G+ PG FGFDPL L   P  + +++QL E+KNGRLAM AIGGL+HQS L H G
Sbjct:  157 GREPGYFGFDPLGLGKNP-QLYKRFQLSELKNGRLAMIAIGGLIHQSFLTHMG 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Light2.070e-3585.51harvesting complex protein n=2 Tax=Ectocarpus TaxI... [more]
Chlorophyll1.020e-2264.71a/b-binding protein domain-containing protein n=1 ... [more]
Light-harvesting2.410e-1557.14complex I chlorophyll a/b binding protein 4 n=1 Ta... [more]
Uncharacterized8.280e-1550.00protein n=1 Tax=Porphyra umbilicalis TaxID=2786 Re... [more]
Protein1.400e-1457.38fucoxanthin chlorophyll a/c protein n=3 Tax=Phaeod... [more]
Light-harvesting1.500e-1353.03complex protein n=1 Tax=Galdieria sulphuraria TaxI... [more]
Light-harvesting3.030e-1353.03protein n=1 Tax=Galdieria sulphuraria TaxID=130081... [more]
Hypothetical4.360e-1354.69protein (Fragment) n=2 Tax=Cryptomonas curvata Tax... [more]
Fucoxanthin-chlorophyll1.370e-1255.00a-c binding protein A, chloroplastic n=1 Tax=Graci... [more]
Light-harvesting3.940e-1260.38protein n=2 Tax=Galdieria sulphuraria TaxID=130081... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75606contigH-canaliculatus_M_contigs75606:2..211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCR7
Preferred nameLhcr1
PFAMsChloroa_b-bind
Model size210
Max annot lvl2759|Eukaryota
KEGG koko:K08907,ko:K08910
KEGG Pathwayko00196,map00196
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.42e-34
EggNOG OGs2D9V2@1|root,2S5EH@2759|Eukaryota
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-03_001900.1
DescriptionChlorophyll A-B binding protein
Cds size204
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.1569867-UTR-H-canaliculatus_M_contigs75606:1..71696854093.1569867-UTR-H-canaliculatus_M_contigs75606:1..7Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs75606 2..7 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.1695397-CDS-H-canaliculatus_M_contigs75606:7..2111696854093.1695397-CDS-H-canaliculatus_M_contigs75606:7..211Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75606 8..211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75606.1.1prot_H-canaliculatus_M_contigs75606.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75606 8..211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75606.1.1

>prot_H-canaliculatus_M_contigs75606.1.1 ID=prot_H-canaliculatus_M_contigs75606.1.1|Name=mRNA_H-canaliculatus_M_contigs75606.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=68bp
MTMDNMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIG
GLVHQSLLLHGGVPFHA*
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mRNA from alignment at H-canaliculatus_M_contigs75606:2..211+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75606.1.1 ID=mRNA_H-canaliculatus_M_contigs75606.1.1|Name=mRNA_H-canaliculatus_M_contigs75606.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=210bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75606:2..211+ (Hapterophycus canaliculatus Oshoro7m male)
GGGAAGATGACGATGGACAACATGCACGAGGACGGACAGGTGCCCGGAGA ATTCGGCTTCGACCCGCTGAAGCTGTCCACCAAGCCCGCCTCGGTCCGCG AGAAGTACCAGTTGCAGGAGATCAAGAACGGCCGCCTGGCCATGTCCGCC ATCGGCGGGCTCGTCCACCAGTCGCTGCTGCTCCACGGCGGCGTCCCGTT CCACGCGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75606:2..211+

>mRNA_H-canaliculatus_M_contigs75606.1.1 ID=mRNA_H-canaliculatus_M_contigs75606.1.1|Name=mRNA_H-canaliculatus_M_contigs75606.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=204bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75606:2..211+ (Hapterophycus canaliculatus Oshoro7m male)
ATGACGATGGACAACATGCACGAGGACGGACAGGTGCCCGGAGAATTCGG
CTTCGACCCGCTGAAGCTGTCCACCAAGCCCGCCTCGGTCCGCGAGAAGT
ACCAGTTGCAGGAGATCAAGAACGGCCGCCTGGCCATGTCCGCCATCGGC
GGGCTCGTCCACCAGTCGCTGCTGCTCCACGGCGGCGTCCCGTTCCACGC
GTAA
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