mRNA_H-canaliculatus_M_contigs75606.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Light (harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCR7_ECTSI) HSP 1 Score: 128 bits (321), Expect = 2.070e-35 Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 1
Query: 1 GKMTMDNMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGVPFHA 207
GKMTMDNMHEDG PG+FGFDP+ L+ KPA VREKYQLQEIKNGRLAMSAIGGL+HQSLLL GGVPFHA
Sbjct: 166 GKMTMDNMHEDGNEPGDFGFDPMMLAKKPADVREKYQLQEIKNGRLAMSAIGGLIHQSLLLGGGVPFHA 234
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Chlorophyll (a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D2_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.020e-22 Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1
Query: 1 GKMTMDNMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGVPFH 204
GKMTM +MH DGQ PG+FGFDPL +S PA + + YQL EIKNGRLAM AI GL+HQS++ GVPF+
Sbjct: 102 GKMTMMDMHADGQTPGDFGFDPLNVSKDPAKLAQ-YQLSEIKNGRLAMMAISGLIHQSIITGHGVPFN 168
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Light-harvesting (complex I chlorophyll a/b binding protein 4 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JGJ4_FISSO) HSP 1 Score: 75.9 bits (185), Expect = 2.410e-15 Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 1
Query: 19 NMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGVPFHA 207
NM+E +VPG+FGFDPL L K A+ R++ QL+E+KNGRLAM AIGG+V QS + G P+ A
Sbjct: 141 NMNEFDRVPGDFGFDPLNLYPKEAAKRKEMQLKELKNGRLAMVAIGGMVAQSAITGNGFPYLA 203
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTR2_PORUM) HSP 1 Score: 74.7 bits (182), Expect = 8.280e-15 Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 1
Query: 1 GKMTMDNMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLLLH 186
GK++ D+M EDG++PG FGFDPL L + ++K +L E+KNGRLAM IGG++H + + H
Sbjct: 136 GKLSYDDMFEDGRIPGNFGFDPLGLYKGTPAQKKKLELAEVKNGRLAMIGIGGVIHSNFIYH 197
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Protein (fucoxanthin chlorophyll a/c protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G502_PHATC) HSP 1 Score: 73.9 bits (180), Expect = 1.400e-14 Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1
Query: 19 NMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGVPF 201
NM+E +VPG+FGFDPLKL K A+ +E+ QL+E+KNGRLAM AIGG+V S + G P+
Sbjct: 145 NMNEFDRVPGDFGFDPLKLYPKDAAKQEQMQLKELKNGRLAMVAIGGMVTGSAITGHGFPY 205
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Light-harvesting (complex protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VTV2_GALSU) HSP 1 Score: 71.6 bits (174), Expect = 1.500e-13 Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1
Query: 1 GKMT-MDNMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGV 195
GKMT +D + + PG+FGFDPL L P + R++Y++ EIKNGRLAM A+GG +H LL H GV
Sbjct: 150 GKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQA-RKRYEVAEIKNGRLAMLAVGGFIHHMLLTHQGV 214
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Light-harvesting (protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q9FDZ6_GALSU) HSP 1 Score: 70.9 bits (172), Expect = 3.030e-13 Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1
Query: 1 GKMT-MDNMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGV 195
GKMT +D + + PG+FGFDPL L P + R +YQ+ EIKNGRLAM A+GG +H L H GV
Sbjct: 149 GKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQT-RRRYQVAEIKNGRLAMLAVGGFIHHMFLTHQGV 213
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MUX0_9CRYP) HSP 1 Score: 70.5 bits (171), Expect = 4.360e-13 Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 1
Query: 1 GKMTMDNMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGG 192
GK+T +M EDG+ PGEFGFDPL P + + +Y+L EIKNGRLAM AIGG+ H L G
Sbjct: 141 GKITPVDMFEDGRKPGEFGFDPLGFGKNPDAFK-RYELAEIKNGRLAMIAIGGMTHHYFLTGKG 203
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Fucoxanthin-chlorophyll (a-c binding protein A, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPQ1_9FLOR) HSP 1 Score: 68.9 bits (167), Expect = 1.370e-12 Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 1 GKMTMDNMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLL 180
GK+T NM EDG VPGE GF+P+ L + E+ +LQEIKNGRLAM +GG++H LL
Sbjct: 143 GKITYVNMFEDGAVPGELGFNPMGLK-----ITERVKLQEIKNGRLAMVGVGGVIHSMLL 197
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Match: Light-harvesting (protein n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q8RW55_GALSU) HSP 1 Score: 67.8 bits (164), Expect = 3.940e-12 Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 34 GQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGG 192
G+ PG FGFDPL L P + +++QL E+KNGRLAM AIGGL+HQS L H G
Sbjct: 157 GREPGYFGFDPLGLGKNP-QLYKRFQLSELKNGRLAMIAIGGLIHQSFLTHMG 208 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75606.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs75606.1.1 >prot_H-canaliculatus_M_contigs75606.1.1 ID=prot_H-canaliculatus_M_contigs75606.1.1|Name=mRNA_H-canaliculatus_M_contigs75606.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=68bp MTMDNMHEDGQVPGEFGFDPLKLSTKPASVREKYQLQEIKNGRLAMSAIGback to top mRNA from alignment at H-canaliculatus_M_contigs75606:2..211+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs75606.1.1 ID=mRNA_H-canaliculatus_M_contigs75606.1.1|Name=mRNA_H-canaliculatus_M_contigs75606.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=210bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75606:2..211+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75606:2..211+ >mRNA_H-canaliculatus_M_contigs75606.1.1 ID=mRNA_H-canaliculatus_M_contigs75606.1.1|Name=mRNA_H-canaliculatus_M_contigs75606.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=204bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75606:2..211+ (Hapterophycus canaliculatus Oshoro7m male)back to top |