mRNA_H-canaliculatus_M_contigs74897.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74897.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74897.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs74897.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR1_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 9.640e-53
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 1
Query:   10 QVTAQRARLDFNRAAGGYNALLFQTPCSWGTVYFPEVWMHLHAALVNEEYDDIPGVLVNGWSGSWKKFLFSLMYHHDWYLLYPGYKQ 270
            +VTAQRA LDFNRAA GYNALLFQTPCSWGTVYFPEVWMHLHAALVN++Y DIPGVLVNGWSGSWKKFLFSLMYH+DWYLLYPGYKQ
Sbjct:  308 EVTAQRAHLDFNRAASGYNALLFQTPCSWGTVYFPEVWMHLHAALVNDKYKDIPGVLVNGWSGSWKKFLFSLMYHNDWYLLYPGYKQ 394          
BLAST of mRNA_H-canaliculatus_M_contigs74897.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH5_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 9.000e-51
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 1
Query:   10 QVTAQRARLDFNRAAGGYNALLFQTPCSWGTVYFPEVWMHLHAALVNEEYDDIPGVLVNGWSGSWKKFLFSLMYHHDWYLLYPGYKQ 270
            +VTAQRA LDFNRAA GYNALLFQTPCSWGTVYFPEVWMHLHAALVN++Y DIPGVLVNGWSGSWKKFLFSLMYH+DWYLLYPGYKQ
Sbjct:  861 EVTAQRAHLDFNRAASGYNALLFQTPCSWGTVYFPEVWMHLHAALVNDKYKDIPGVLVNGWSGSWKKFLFSLMYHNDWYLLYPGYKQ 947          
BLAST of mRNA_H-canaliculatus_M_contigs74897.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C483_DIALT)

HSP 1 Score: 74.7 bits (182), Expect = 1.260e-13
Identity = 36/95 (37.89%), Postives = 50/95 (52.63%), Query Frame = 1
Query:   10 QVTAQRARLDFNRAAGGYNALLFQTPCSWGTVYFPEVWMHLHAALVNEEYDD------IPGVLVNGWSGSWKKFLFSLMYHHDWYLLYPGYKQVS 276
            +V   R R+D +   GG      Q PCSWG ++FPE W      L++           IPG +V+GW GSWKK+L  LMY    ++LYP ++  S
Sbjct:  937 EVARPRRRIDLHAELGG-RPFFQQLPCSWGALFFPEAWRAFRDYLLHRMAQGPAVQVKIPGSVVDGWKGSWKKYLIELMYRRAQWMLYPNFRNQS 1030          
BLAST of mRNA_H-canaliculatus_M_contigs74897.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Rhizophagus TaxID=1129544 RepID=A0A2I1G1V6_9GLOM)

HSP 1 Score: 66.2 bits (160), Expect = 1.130e-10
Identity = 30/77 (38.96%), Postives = 39/77 (50.65%), Query Frame = 1
Query:   73 LFQTPCSWGTVYFPEVWMHLHAALVNEEYD---------DIPGVLVNGWSGSWKKFLFSLMYHHDWYLLYPGYKQVS 276
            L+Q PCSWG VYFPE+W   H        D          +P V  N W  SWK+FL  L+Y   + +LYP Y+  +
Sbjct:  209 LWQVPCSWGAVYFPEIWREFHDYFPARLQDWNGPKLQNITVPEVRSNRWKNSWKRFLIELVYLRGYVMLYPNYENFA 285          
BLAST of mRNA_H-canaliculatus_M_contigs74897.1.1 vs.
Match: Uncharacterized (protein n=8 Tax=Rhizophagus irregularis TaxID=588596 RepID=U9SNX5_RHIID)

HSP 1 Score: 66.2 bits (160), Expect = 1.160e-10
Identity = 30/77 (38.96%), Postives = 39/77 (50.65%), Query Frame = 1
Query:   73 LFQTPCSWGTVYFPEVWMHLHAALVNEEYD---------DIPGVLVNGWSGSWKKFLFSLMYHHDWYLLYPGYKQVS 276
            L+Q PCSWG VYFPE+W   H        D          +P V  N W  SWK+FL  L+Y   + +LYP Y+  +
Sbjct:  386 LWQVPCSWGAVYFPEIWREFHDYFPARLQDWNGPKLQNITVPEVRSNRWKNSWKRFLIELVYLRGYVMLYPNYENFA 462          
BLAST of mRNA_H-canaliculatus_M_contigs74897.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397HJX1_9GLOM)

HSP 1 Score: 65.9 bits (159), Expect = 1.590e-10
Identity = 31/73 (42.47%), Postives = 35/73 (47.95%), Query Frame = 1
Query:   73 LFQTPCSWGTVYFPEVWMHLHAALVNEEYD---------DIPGVLVNGWSGSWKKFLFSLMYHHDWYLLYPGY 264
            L Q PCSWG VYFPE+W   H        D          IPGV  N W  SWK+F   L Y   + +LYP Y
Sbjct:  388 LCQVPCSWGAVYFPEIWKEFHYYFPARLQDWRSLRLQNITIPGVRSNNWKNSWKRFFIELAYIRGYVMLYPNY 460          
BLAST of mRNA_H-canaliculatus_M_contigs74897.1.1 vs.
Match: BQ2448_8107 (protein n=1 Tax=Microbotryum intermedium TaxID=269621 RepID=A0A238FTB2_9BASI)

HSP 1 Score: 65.5 bits (158), Expect = 2.230e-10
Identity = 33/76 (43.42%), Postives = 41/76 (53.95%), Query Frame = 1
Query:   73 LFQTPCSWGTVYFPEVW--MHLHAALVNEEY------DDIPGVLVNGWSGSWKKFLFSLMYHHDWYLLYPGYKQVS 276
            L Q PCSWG VYFPEVW   HL+ AL   E         +P +  N W  SWKK++  L+Y   + +LYP Y   S
Sbjct:  779 LSQIPCSWGAVYFPEVWREFHLYLALRLSEMALPIADQIVPEIRSNKWPQSWKKYIIELVYLRGYVMLYPNYANYS 854          
BLAST of mRNA_H-canaliculatus_M_contigs74897.1.1 vs.
Match: uncharacterized (protein n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI001904019A)

HSP 1 Score: 65.1 bits (157), Expect = 3.020e-10
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 1
Query:   73 LFQTPCSWGTVYFPEVWMHLHAALVN---EEYDDIPGVLV-----NGWSGSWKKFLFSLMYHHDWYLLYPGYKQVS 276
            L Q PCSWG +YFPEVW   H  L++   E   DI  ++V     N W+ SWKKF   L++   + +LYP Y   +
Sbjct:  765 LSQVPCSWGAIYFPEVWREFHEYLIDRLSERIFDIETLVVPDSRSNKWTKSWKKFFIELVFLRGYLMLYPNYPNFT 840          
BLAST of mRNA_H-canaliculatus_M_contigs74897.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397W2T0_9GLOM)

HSP 1 Score: 63.2 bits (152), Expect = 1.390e-9
Identity = 29/77 (37.66%), Postives = 40/77 (51.95%), Query Frame = 1
Query:   73 LFQTPCSWGTVYFPEVWMHLHAAL---------VNEEYDDIPGVLVNGWSGSWKKFLFSLMYHHDWYLLYPGYKQVS 276
            L Q PCSWG ++FPEVW   H  L          N +  +IP    N W+ SWK+F   L+Y   + +LYP Y+  +
Sbjct:  377 LIQVPCSWGALFFPEVWREFHDYLRARLDDTTGPNLQQIEIPESRSNMWTSSWKRFFIELIYLRGYMMLYPNYEDFT 453          
BLAST of mRNA_H-canaliculatus_M_contigs74897.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397T4H4_9GLOM)

HSP 1 Score: 62.8 bits (151), Expect = 1.870e-9
Identity = 31/77 (40.26%), Postives = 36/77 (46.75%), Query Frame = 1
Query:   73 LFQTPCSWGTVYFPEVWMHLHAALVNEEYD---------DIPGVLVNGWSGSWKKFLFSLMYHHDWYLLYPGYKQVS 276
            L+Q PCSWG VYFPEVW   H        D          IP    N W  SWK+FL  L Y   + +LYP Y+   
Sbjct:  209 LWQVPCSWGAVYFPEVWREFHDYFPARLQDWNGLKVQNITIPESRSNRWKRSWKRFLIELAYLRGYVMLYPNYENFK 285          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74897.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized9.640e-5391.95protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.000e-5191.95protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.260e-1337.89protein n=1 Tax=Diacronema lutheri TaxID=2081491 R... [more]
Uncharacterized1.130e-1038.96protein n=2 Tax=Rhizophagus TaxID=1129544 RepID=A0... [more]
Uncharacterized1.160e-1038.96protein n=8 Tax=Rhizophagus irregularis TaxID=5885... [more]
Uncharacterized1.590e-1042.47protein n=1 Tax=Diversispora epigaea TaxID=1348612... [more]
BQ2448_81072.230e-1043.42protein n=1 Tax=Microbotryum intermedium TaxID=269... [more]
uncharacterized3.020e-1040.79protein n=1 Tax=Cantharellus anzutake TaxID=175056... [more]
Uncharacterized1.390e-937.66protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397W... [more]
Uncharacterized1.870e-940.26protein n=1 Tax=Glomus cerebriforme TaxID=658196 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74897contigH-canaliculatus_M_contigs74897:129..407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LPR1
Model size279
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.58e-53
EggNOG OGs2CMCB@1|root,2QPYF@2759|Eukaryota
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854086.2536874-CDS-H-canaliculatus_M_contigs74897:128..4071696854086.2536874-CDS-H-canaliculatus_M_contigs74897:128..407Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74897 129..407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74897.1.1prot_H-canaliculatus_M_contigs74897.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74897 129..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74897.1.1

>prot_H-canaliculatus_M_contigs74897.1.1 ID=prot_H-canaliculatus_M_contigs74897.1.1|Name=mRNA_H-canaliculatus_M_contigs74897.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=93bp
FRPQVTAQRARLDFNRAAGGYNALLFQTPCSWGTVYFPEVWMHLHAALVN
EEYDDIPGVLVNGWSGSWKKFLFSLMYHHDWYLLYPGYKQVS*
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mRNA from alignment at H-canaliculatus_M_contigs74897:129..407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74897.1.1 ID=mRNA_H-canaliculatus_M_contigs74897.1.1|Name=mRNA_H-canaliculatus_M_contigs74897.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=279bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74897:129..407+ (Hapterophycus canaliculatus Oshoro7m male)
TTTCGCCCGCAGGTGACCGCCCAGCGAGCGCGCCTGGACTTCAACCGTGC GGCCGGCGGCTACAACGCGCTGCTCTTCCAGACCCCGTGCAGCTGGGGCA CCGTCTACTTCCCGGAGGTCTGGATGCACCTGCACGCCGCCCTGGTGAAC GAAGAGTACGACGACATCCCGGGGGTGCTCGTGAACGGCTGGAGCGGCAG CTGGAAGAAATTCCTGTTCTCACTCATGTACCACCACGATTGGTACCTGC TCTACCCGGGCTACAAGCAGGTGAGCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74897:129..407+

>mRNA_H-canaliculatus_M_contigs74897.1.1 ID=mRNA_H-canaliculatus_M_contigs74897.1.1|Name=mRNA_H-canaliculatus_M_contigs74897.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=279bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74897:129..407+ (Hapterophycus canaliculatus Oshoro7m male)
TTTCGCCCGCAGGTGACCGCCCAGCGAGCGCGCCTGGACTTCAACCGTGC
GGCCGGCGGCTACAACGCGCTGCTCTTCCAGACCCCGTGCAGCTGGGGCA
CCGTCTACTTCCCGGAGGTCTGGATGCACCTGCACGCCGCCCTGGTGAAC
GAAGAGTACGACGACATCCCGGGGGTGCTCGTGAACGGCTGGAGCGGCAG
CTGGAAGAAATTCCTGTTCTCACTCATGTACCACCACGATTGGTACCTGC
TCTACCCGGGCTACAAGCAGGTGAGCTGA
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