prot_H-canaliculatus_F_contig12850.2379.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig12850.2379.1
Unique Nameprot_H-canaliculatus_F_contig12850.2379.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length278
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12850.2379.1 vs. uniprot
Match: D8LFX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFX2_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 8.210e-57
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 0 
Query:  160 SSKAEPLGINITSGNFTQKGDTPFGPLDRVGAGVPELLDGLHAFGICAHVEAVTVYSLYSADMERVHLRLRATFRNSLRLAVSPFSSAPCQAFSDVGYRGEDGEVEIEVLEGAHRSQH 277
            S  AEPLGINI + +F Q GDTPFGPL+R+G  VPEL DGLHAFGI A+VEA TVYSLY+ADMERV+LRLRATFRNSLRL +SPFSS+ CQAFSDVGYRG+ GEVEIEVLEGAHRSQH
Sbjct:   21 SHSAEPLGINIAAESFNQSGDTPFGPLERLG--VPELQDGLHAFGIYANVEAATVYSLYTADMERVYLRLRATFRNSLRLPISPFSSSTCQAFSDVGYRGDRGEVEIEVLEGAHRSQH 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12850.2379.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFX2_ECTSI8.210e-5779.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..277
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..29
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..23
score: 0.518
NoneNo IPR availableTMHMMTMhelixcoord: 2..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12850contigH-canaliculatus_F_contig12850:676..3220 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12850.2379.1mRNA_H-canaliculatus_F_contig12850.2379.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig12850 580..3347 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig12850.2379.1 ID=prot_H-canaliculatus_F_contig12850.2379.1|Name=mRNA_H-canaliculatus_F_contig12850.2379.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=278bp
MLVWLVLGMLLLLLLLLLLLVLSSSTSRCWLRCKACLKFARRNHLEPTHC
RLATPRPRTLASSPCSLYPDSRPTQLPAQPSASVLQTLVSLPPCRMAYPS
KEESQNFPLRPPRQLQNFSKLVLKAANRTESGGLSFDAINRVLELCPGAC
DGSVLVVPDSSKAEPLGINITSGNFTQKGDTPFGPLDRVGAGVPELLDGL
HAFGICAHVEAVTVYSLYSADMERVHLRLRATFRNSLRLAVSPFSSAPCQ
AFSDVGYRGEDGEVEIEVLEGAHRSQH*
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