mRNA_H-canaliculatus_F_contig12850.2379.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12850.2379.1
Unique NamemRNA_H-canaliculatus_F_contig12850.2379.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12850.2379.1 vs. uniprot
Match: D8LFX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFX2_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 1.130e-55
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 1 
Query:  574 SSKAEPLGINITSGNFTQKGDTPFGPLDRVGAGVPELLDGLHAFGICAHVEAVTVYSLYSADMERVHLRLRATFRNSLRLAVSPFSSAPCQAFSDVGYRGEDGEVEIEVLEGAHRSQH 927
            S  AEPLGINI + +F Q GDTPFGPL+R+G  VPEL DGLHAFGI A+VEA TVYSLY+ADMERV+LRLRATFRNSLRL +SPFSS+ CQAFSDVGYRG+ GEVEIEVLEGAHRSQH
Sbjct:   21 SHSAEPLGINIAAESFNQSGDTPFGPLERLG--VPELQDGLHAFGIYANVEAATVYSLYTADMERVYLRLRATFRNSLRLPISPFSSSTCQAFSDVGYRGDRGEVEIEVLEGAHRSQH 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12850.2379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFX2_ECTSI1.130e-5579.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12850contigH-canaliculatus_F_contig12850:580..3347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue6.4e-10
Seed eggNOG ortholog65071.PYU1_T013804
EggNOG free text desc.function. Source PGD
EggNOG OGs1MBKC@121069,29DEQ@1,2RKIM@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_005180.1
Exons5
Model size1057
Cds size834
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929016.5026011-UTR-H-canaliculatus_F_contig12850:579..6751622929016.5026011-UTR-H-canaliculatus_F_contig12850:579..675Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12850 580..675 +
1696845648.3998735-UTR-H-canaliculatus_F_contig12850:579..6751696845648.3998735-UTR-H-canaliculatus_F_contig12850:579..675Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12850 580..675 +
1622929016.5909438-UTR-H-canaliculatus_F_contig12850:3220..33471622929016.5909438-UTR-H-canaliculatus_F_contig12850:3220..3347Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12850 3221..3347 +
1696845648.4721725-UTR-H-canaliculatus_F_contig12850:3220..33471696845648.4721725-UTR-H-canaliculatus_F_contig12850:3220..3347Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12850 3221..3347 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929016.5162485-CDS-H-canaliculatus_F_contig12850:675..8091622929016.5162485-CDS-H-canaliculatus_F_contig12850:675..809Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12850 676..809 +
1696845648.4133325-CDS-H-canaliculatus_F_contig12850:675..8091696845648.4133325-CDS-H-canaliculatus_F_contig12850:675..809Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12850 676..809 +
1622929016.5302231-CDS-H-canaliculatus_F_contig12850:819..10681622929016.5302231-CDS-H-canaliculatus_F_contig12850:819..1068Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12850 820..1068 +
1696845648.4268663-CDS-H-canaliculatus_F_contig12850:819..10681696845648.4268663-CDS-H-canaliculatus_F_contig12850:819..1068Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12850 820..1068 +
1622929016.542027-CDS-H-canaliculatus_F_contig12850:1477..15811622929016.542027-CDS-H-canaliculatus_F_contig12850:1477..1581Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12850 1478..1581 +
1696845648.4411397-CDS-H-canaliculatus_F_contig12850:1477..15811696845648.4411397-CDS-H-canaliculatus_F_contig12850:1477..1581Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12850 1478..1581 +
1622929016.5616767-CDS-H-canaliculatus_F_contig12850:2395..25381622929016.5616767-CDS-H-canaliculatus_F_contig12850:2395..2538Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12850 2396..2538 +
1696845648.4522078-CDS-H-canaliculatus_F_contig12850:2395..25381696845648.4522078-CDS-H-canaliculatus_F_contig12850:2395..2538Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12850 2396..2538 +
1622929016.5760522-CDS-H-canaliculatus_F_contig12850:3016..32201622929016.5760522-CDS-H-canaliculatus_F_contig12850:3016..3220Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12850 3017..3220 +
1696845648.4626312-CDS-H-canaliculatus_F_contig12850:3016..32201696845648.4626312-CDS-H-canaliculatus_F_contig12850:3016..3220Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12850 3017..3220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12850.2379.1prot_H-canaliculatus_F_contig12850.2379.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12850 676..3220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12850.2379.1

>prot_H-canaliculatus_F_contig12850.2379.1 ID=prot_H-canaliculatus_F_contig12850.2379.1|Name=mRNA_H-canaliculatus_F_contig12850.2379.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=278bp
MLVWLVLGMLLLLLLLLLLLVLSSSTSRCWLRCKACLKFARRNHLEPTHC
RLATPRPRTLASSPCSLYPDSRPTQLPAQPSASVLQTLVSLPPCRMAYPS
KEESQNFPLRPPRQLQNFSKLVLKAANRTESGGLSFDAINRVLELCPGAC
DGSVLVVPDSSKAEPLGINITSGNFTQKGDTPFGPLDRVGAGVPELLDGL
HAFGICAHVEAVTVYSLYSADMERVHLRLRATFRNSLRLAVSPFSSAPCQ
AFSDVGYRGEDGEVEIEVLEGAHRSQH*
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mRNA from alignment at H-canaliculatus_F_contig12850:580..3347+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12850.2379.1 ID=mRNA_H-canaliculatus_F_contig12850.2379.1|Name=mRNA_H-canaliculatus_F_contig12850.2379.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2768bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12850:580..3347+ (Hapterophycus canaliculatus Oshoro5f female)
TTTGCTGCTGCTCCCGGCGTCTGGCGCTCACTGGTCTGGCGCCGTTCCCT
TTCCCCTCTTTGTCTTTCGGAGTGATCGGTGCTGGTGCTGGTGCTGATGC
TGGTTTGGCTGGTGCTAGGGATGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGGTGTTGTCGTCGTCGACTTCACGTTGCTGGCTTCGCTGCAAGGC
GTGCTTGAAATTCGCCAGGCGGAATCACCTGCTTAACTAGTGAACCCACA
CATTGCCGTCTGGCTACGCCAAGACCTCGAACTTTGGCCTCCTCTCCTTG
CAGCTTGTACCCGGACTCCCGCCCTACCCAACTACCAGCGCAGCCATCCG
CCTCCGTCCTTCAAACCTTGGTCTCCCTCCCGCCTTGCCGCATGGCCTAC
CCATCAAAGGAAGAATCGCAGAACTTTCCTCTCCGACCGCCACGTCAGCT
GCAAAACTTCTCGAAGCTCGTTCTCAAGGCGGCAAACAGGTGAGAGAACG
GAGCAAAGTCGATGCCGACTGCAACGGAGACTCGTGGTCGACACTCCCTG
TCTTTCACGCTTCATTTCATGCTTCCCTCCGATGCTGATCGTTTGTTTCG
CTAACCTCCGTCCCCAAGAAAGCAGCGGGGGATGCGCTCTCGCGAATCGT
GATCGCATTTCCCCCGCGTTTGCCAGATCTCCCTCTGCGACTCGCCTTCC
TTTGGCTCGTGGAGACACGGTCATATCGCTTGCTTCGTATGCCGGCATGA
CAGGGCCAAACAAATTGACAACGGAAAGCTTCAAGCTCTCTCCCGTCGCC
CTGGGTTCGTATGTCCTTGATCCCTCCCCACGCCCCCTTGATTGCACGAC
AACGCGCGTACCCGTTCGTCCGGTGGACGATTTCGGGCCGACTTTCAGGA
CGGAGTCCGGAGGGTTGTCGTTCGACGCGATCAATCGGGTCCTGGAGCTC
TGCCCGGGTGCATGTGATGGATCGGTGCTGGTGGTGCCGGATTCATCGAA
AGGTGCGATACAGATGAGAGAGAGGAAGATGTAGAGAGAGAGGGGAAAAT
AAACATACATGAGAGACAGAGACAGAGACAGAGACAGAGACAGAGGCAGA
GACAGAGACAGAGAGGCAGAGGCAGAGACAGAGACAGAGATAGAAACAGA
GACAGAGACAGAGACAGAAACAGAGACAGAGACAGAGACAGAGACAGAGA
CAGAGACAGAGACAGAGACATACAGGTAGCCAGAAAGGAAAAAAGGGAGA
CAAGAGTCATGCTGCTGGACCTCTGCCGCCACCTTGCAGGCTTTGGTTCT
CTCTCATAGGGGTCTGTCCCCTCGTTCCGTGGTCTGCTTCACCGCTTACT
TCGCGGGCGCTTGCCGGGCCGACGACGAAACAATCCATGATCCACGATGC
TGCACCCGTGTCCTGTCCAGCGCGGAGTCTTTTTCGATGGGATTCGTCCG
ACTGAGCCCGAGACGTGGCGTCCACGCGCGTGTGCGTTTCAGACGGGCTG
CTCGCGCCACGAACCTCAACGGGTGTACGCGCTCGCGCCGACCGCCGGGT
AGATGTGACACAACTGCAGCACCGTCCGACCGATGGGTCGCTTGCTCTTT
GTTCGATGTTCGAGGGATCCGCTCGCCGAAGAACAGGCGCCCGCCGACCA
TCGGGGTTACGCCATTCATCCTGGACAACTTATTGTTGCCCGGTCCCGCC
CCGTATTCTCTTACGCGCCCCTCCCTTCTCCACCATTCCCTCTTGTCTCT
CACGTACTCTCATTTCCTCGCCTGCTTCCGCCCGCCCCCCCGCCCGCCCG
CCCCGTGCTCGCTCAGCCGAGCCGCTAGGCATCAACATCACCTCGGGAAA
CTTTACTCAGAAGGGGGACACTCCGTTTGGTCCCCTCGACAGGGTGGGCG
CGGGCGTTCCCGAGCTGCTCGACGGCCTTCACGCCTTCGGGATCTGCGCG
CACGTGGAGGTGAGAGGCTAGAGGCGCCGCCGGCCGATGTTTACGGCGAA
CTCTTCGCGCACCGAACGAGTGCAGGAAAGGCTACTACGAGGAAAATTTC
TCGGGGTGATCCTCGCGTGCCGCTGGCTTGCTCTCGTCGTCTTGCGAGAG
GTTCCCTGGGGAGTGGGAAATATTAATATTTGAGTTTTCGTTCTGGTGCT
CGACTGGGGTTTTCCGGGAGGCGTGCGGCGTTTCGACGGCATTTTGCCGC
AATGAATCCGCGATCACCGCATGTGTATCGCGGGAAAGAATAGTGTCGTT
CTTTTTTTTAAAAGGAAGAGGTATTTCTTAAGTGAAGAGAGTCCGGGGAC
GCGTCGACTCACCCGGCGCCGGTGGTGTCCTCGTCCGTCCGTCGTCGCTA
TCTCGAGGCTCCGGTTCGATCCCCTTTCGCCTGTCCGGACAACGCGCCCA
AACGCACCACGAACGTTCTCTCACCAAAACGTGACAGGCGGTGACGGTGT
ACTCCCTCTACAGCGCGGACATGGAACGGGTACACCTCCGGCTTCGAGCG
ACCTTCAGAAACTCGCTGCGGCTGGCGGTCAGCCCGTTCTCGAGCGCACC
GTGCCAGGCGTTTTCGGACGTGGGGTACCGGGGGGAGGACGGAGAGGTGG
AGATCGAGGTTTTGGAGGGGGCCCATCGCAGTCAGCACTGAACCGAAGAC
AAAGGCGTGTAGGGTTTGCGCGTTTTGCATGTTGGCGTTCGTGGGCGTGG
GCGTAGCAAACGCGGATGCAAACGGGTGTCACAACTGGCGCCGAGTTCGT
TCCAAGCAGAAATCCGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12850:580..3347+

>mRNA_H-canaliculatus_F_contig12850.2379.1 ID=mRNA_H-canaliculatus_F_contig12850.2379.1|Name=mRNA_H-canaliculatus_F_contig12850.2379.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1668bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12850:580..3347+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGGTTTGGCTGGTGCTAGGGATGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGGTGTTGTCGTCGTCGACTTCACGTTGCTGGCTTCGCTGCA
AGGCGTGCTTGAAATTCGCCAGGCGGAATCACCTATGCTGGTTTGGCTGG
TGCTAGGGATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTGTTG
TCGTCGTCGACTTCACGTTGCTGGCTTCGCTGCAAGGCGTGCTTGAAATT
CGCCAGGCGGAATCACCTTGAACCCACACATTGCCGTCTGGCTACGCCAA
GACCTCGAACTTTGGCCTCCTCTCCTTGCAGCTTGTACCCGGACTCCCGC
CCTACCCAACTACCAGCGCAGCCATCCGCCTCCGTCCTTCAAACCTTGGT
CTCCCTCCCGCCTTGCCGCATGGCCTACCCATCAAAGGAAGAATCGCAGA
ACTTTCCTCTCCGACCGCCACGTCAGCTGCAAAACTTCTCGAAGCTCGTT
CTCAAGGCGGCAAACAGTGAACCCACACATTGCCGTCTGGCTACGCCAAG
ACCTCGAACTTTGGCCTCCTCTCCTTGCAGCTTGTACCCGGACTCCCGCC
CTACCCAACTACCAGCGCAGCCATCCGCCTCCGTCCTTCAAACCTTGGTC
TCCCTCCCGCCTTGCCGCATGGCCTACCCATCAAAGGAAGAATCGCAGAA
CTTTCCTCTCCGACCGCCACGTCAGCTGCAAAACTTCTCGAAGCTCGTTC
TCAAGGCGGCAAACAGGACGGAGTCCGGAGGGTTGTCGTTCGACGCGATC
AATCGGGTCCTGGAGCTCTGCCCGGGTGCATGTGATGGATCGGTGCTGGT
GGTGCCGGATTCATCGAAAGGACGGAGTCCGGAGGGTTGTCGTTCGACGC
GATCAATCGGGTCCTGGAGCTCTGCCCGGGTGCATGTGATGGATCGGTGC
TGGTGGTGCCGGATTCATCGAAAGCCGAGCCGCTAGGCATCAACATCACC
TCGGGAAACTTTACTCAGAAGGGGGACACTCCGTTTGGTCCCCTCGACAG
GGTGGGCGCGGGCGTTCCCGAGCTGCTCGACGGCCTTCACGCCTTCGGGA
TCTGCGCGCACGTGGAGCCGAGCCGCTAGGCATCAACATCACCTCGGGAA
ACTTTACTCAGAAGGGGGACACTCCGTTTGGTCCCCTCGACAGGGTGGGC
GCGGGCGTTCCCGAGCTGCTCGACGGCCTTCACGCCTTCGGGATCTGCGC
GCACGTGGAGGCGGTGACGGTGTACTCCCTCTACAGCGCGGACATGGAAC
GGGTACACCTCCGGCTTCGAGCGACCTTCAGAAACTCGCTGCGGCTGGCG
GTCAGCCCGTTCTCGAGCGCACCGTGCCAGGCGTTTTCGGACGTGGGGTA
CCGGGGGGAGGACGGAGAGGTGGAGATCGAGGTTTTGGAGGGGGCCCATC
GCAGTCAGCACTGAGCGGTGACGGTGTACTCCCTCTACAGCGCGGACATG
GAACGGGTACACCTCCGGCTTCGAGCGACCTTCAGAAACTCGCTGCGGCT
GGCGGTCAGCCCGTTCTCGAGCGCACCGTGCCAGGCGTTTTCGGACGTGG
GGTACCGGGGGGAGGACGGAGAGGTGGAGATCGAGGTTTTGGAGGGGGCC
CATCGCAGTCAGCACTGA
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