prot_H-canaliculatus_F_contig1238.2024.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1238.2024.1 vs. uniprot
Match: A0A6H5JM01_9PHAE (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM01_9PHAE) HSP 1 Score: 388 bits (996), Expect = 2.680e-130 Identity = 239/344 (69.48%), Postives = 277/344 (80.52%), Query Frame = 0
Query: 1 MAFLLDSQMPLTALQPSRQKLMLNVIEEFHGPIVSTVAEVLIRAERTTLAELTRLVQRDQGIMAVSRAGKTKTKVTSANVKESLLIMMQHNMVKAAMPTERELRRARASGASQTTNIRLLYSLMPLEVLVRTRGPQFHSHASKTFSKVAGLVVDCFLRHGRRTLPDVKEEVLSRARGAAKARKALSQANEDGGEEDEED-EEVTGESIQKSFEELVMGKYIDKVAKLDLITPTVEPEKAKKPSMTFGAAAGSHGARGNGSSSNSGPNVKNTELAARQQKGAAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELPVEMRNMVNSI----GAGGANDGR 339
MAFLL+SQMPL AL+ SR+KL+L+VIEE+HGPIVSTVAEVL+RAERTTLAELTRLV RDQGIM VSRAGKT+TKVT+ANVKESLLIM QHNMV AAMPTE+E+R+ARAS + +++NIRL Y+L+PLEVLVRTRGPQFHSHA+KTFSKVAGLVVDCFLRHGRRTLPDVKEE+L R AA+ARKAL+ + ++ +EVT ESIQKSFEELVM KYIDKV KLDL+TPTVEPEKAKKPSMTFGA A + ++G +S+ +G N +N ELA RQQKGAAQR XXXXXXXXXXXX ELPVEMR++V+S+ GGA DGR
Sbjct: 1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRAERTTLAELTRLVLRDQGIMGVSRAGKTRTKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGRSSNIRLHYTLLPLEVLVRTRGPQFHSHAAKTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALANPEDXXXXXXXDNVQEVTSESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPA-DNDSKGKSASAANGQNGRNKELAERQQKGAAQRSARKRRMLGQDSNSNGVDGXXXXXXXXXXXX---ELPVEMRSLVSSMEEGFDGGGATDGR 340
BLAST of mRNA_H-canaliculatus_F_contig1238.2024.1 vs. uniprot
Match: D7FMS5_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS5_ECTSI) HSP 1 Score: 365 bits (936), Expect = 3.420e-123 Identity = 212/290 (73.10%), Postives = 238/290 (82.07%), Query Frame = 0
Query: 1 MAFLLDSQMPLTALQPSRQKLMLNVIEEFHGPIVSTVAEVLIRAERTTLAELTRLVQRDQGIMAVSRAGKTKTKVTSANVKESLLIMMQHNMVKAAMPTERELRRARASGASQTTNIRLLYSLMPLEVLVRTRGPQFHSHASKTFSKVAGLVVDCFLRHGRRTLPDVKEEVLSRARGAAKARKALSQANEDGGEEDEED--EEVTGESIQKSFEELVMGKYIDKVAKLDLITPTVEPEKAKKPSMTFGAAAGSHGARGNGSSSN------SGPNVKNTELAARQQKGAAQ 282
MAFLL+SQMPL AL+ SR+KL+L+VIEE+HGPIVSTVAEVL+RA+RTTLAELTRLV RDQGIM VSRAGKT TKVT+ANVKESLLIM QHNMV AAMPTE+E+R+ARAS + ++ NIRL Y+L+PLEVLVRTRGPQFHSHA++TFSKVAGLVVDCFLRHGRRTLPDVKEE+L R AA+ARKAL+ ED D +EVT ESIQKSFEELVM KYIDKV KLDL+TPTVEPEKAKKPSMTFGA AGS +G N +N ELA RQQKGAAQ
Sbjct: 1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRADRTTLAELTRLVLRDQGIMGVSRAGKTITKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGRSGNIRLHYTLLPLEVLVRTRGPQFHSHAARTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALANP-EDXXXXXXXDHVQEVTPESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPAGSXXXXXXXXXXXXXXXXANGQNGRNKELAERQQKGAAQ 289
BLAST of mRNA_H-canaliculatus_F_contig1238.2024.1 vs. uniprot
Match: A0A5J5AFJ9_9ASTE (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5AFJ9_9ASTE) HSP 1 Score: 58.2 bits (139), Expect = 1.070e-5 Identity = 56/222 (25.23%), Postives = 100/222 (45.05%), Query Frame = 0
Query: 20 KLMLNVIEEFHGPIVSTVAEVLIRAERTTLAELTRLVQRDQGIMAVSRAGKTKTKVTSANVKESLLIMMQHNMVKAAMPTERELRRARASGASQTTNIRLLYSLMPLEVLVRTRGPQFHSHASKTFSKVAGLVVDCFLRHGRRTLPDVKEEVLSRARGAAKARKALSQANEDGGEEDEEDEEVTGESIQKSFEELVMGKYIDKV-AKLDLITPTVEPEKAKK 240
KL +N+I + G IV+ V E L+R +L ++ RL T+++ NVK SLL+++QHN V+A ++E G + T I Y ++ ++ R P+F + S+ K + + L+HGR ++ ++L R + + + SQ E++Q++F LV +Y+++ A + P E E A K
Sbjct: 8 KLGINLISSYFGDIVAKVCECLLRKGTLSLGQIVRL-----------------TELSRENVKNSLLVLIQHNCVQA-FTIQQE------GGFQEETKIITQYMVLFDIIIHHMRFPKFLAIVSEDLGKECEEIFEGLLQHGRLSV----NQILERHKQTSNQSEGNSQ-----------------EAVQENFSRLVNARYVERCPAHQPFLAPLTEEETAAK 184
BLAST of mRNA_H-canaliculatus_F_contig1238.2024.1 vs. uniprot
Match: A0A6P4M5S8_GOSAR (DNA-directed RNA polymerase III subunit RPC3 n=5 Tax=Gossypium TaxID=3633 RepID=A0A6P4M5S8_GOSAR) HSP 1 Score: 55.5 bits (132), Expect = 6.730e-5 Identity = 57/223 (25.56%), Postives = 102/223 (45.74%), Query Frame = 0
Query: 20 KLMLNVIEEFHGPIVSTVAEVLIRAERTTLAELTRLVQRDQGIMAVSRAGKTKTKVTSANVKESLLIMMQHNMVKAAMPTERELRRARASGASQTTNIRLLYSLMPLEVLVRTRGPQFHSHASKTFSKVAGLVVDCFLRHGRRTLPDVKEEVLSRARGAAKARKALSQANEDGGEEDEEDEEVTGESIQKSFEELVMGKYIDKVAKLD--LITPTVEPEKAKK 240
K +N+I G +V+ V E L+R TL + R T++TS+ VK SLL+++QHN V+A + + GA Q+T L+ ++ R R P+F + SK K +++ L+HGR +L +++ RA+ + ++GG+ + +Q++F +L+ +I++ + L PT E E A+K
Sbjct: 8 KYAVNLITAHFGDLVAKVCECLLRKGPLTLQAIVR-----------------STELTSSQVKNSLLVLIQHNCVQAFILDQTG---EHGDGAKQSTQYIALFD----NIIQRWRFPKFLTMVSKKLDKQCAELLEGLLQHGRLSL----KQMFDRAK-----------SGQNGGD----------DVVQEAFVKLLNAHFIERCPASEPVLTNPTKEEEAARK 181
BLAST of mRNA_H-canaliculatus_F_contig1238.2024.1 vs. uniprot
Match: A0A6P4MA18_GOSAR (DNA-directed RNA polymerase III subunit RPC3 n=15 Tax=Gossypium TaxID=3633 RepID=A0A6P4MA18_GOSAR) HSP 1 Score: 55.5 bits (132), Expect = 7.760e-5 Identity = 57/223 (25.56%), Postives = 102/223 (45.74%), Query Frame = 0
Query: 20 KLMLNVIEEFHGPIVSTVAEVLIRAERTTLAELTRLVQRDQGIMAVSRAGKTKTKVTSANVKESLLIMMQHNMVKAAMPTERELRRARASGASQTTNIRLLYSLMPLEVLVRTRGPQFHSHASKTFSKVAGLVVDCFLRHGRRTLPDVKEEVLSRARGAAKARKALSQANEDGGEEDEEDEEVTGESIQKSFEELVMGKYIDKVAKLD--LITPTVEPEKAKK 240
K +N+I G +V+ V E L+R TL + R T++TS+ VK SLL+++QHN V+A + + GA Q+T L+ ++ R R P+F + SK K +++ L+HGR +L +++ RA+ + ++GG+ + +Q++F +L+ +I++ + L PT E E A+K
Sbjct: 8 KYAVNLITAHFGDLVAKVCECLLRKGPLTLQAIVR-----------------STELTSSQVKNSLLVLIQHNCVQAFILDQTG---EHGDGAKQSTQYIALFD----NIIQRWRFPKFLTMVSKKLDKQCAELLEGLLQHGRLSL----KQMFDRAK-----------SGQNGGD----------DVVQEAFVKLLNAHFIERCPASEPVLTNPTKEEEAARK 181 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1238.2024.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 5
InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-canaliculatus_F_contig1238.2024.1 ID=prot_H-canaliculatus_F_contig1238.2024.1|Name=mRNA_H-canaliculatus_F_contig1238.2024.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=339bpback to top |