prot_H-canaliculatus_F_contig1238.2024.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1238.2024.1
Unique Nameprot_H-canaliculatus_F_contig1238.2024.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length339
Homology
BLAST of mRNA_H-canaliculatus_F_contig1238.2024.1 vs. uniprot
Match: A0A6H5JM01_9PHAE (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM01_9PHAE)

HSP 1 Score: 388 bits (996), Expect = 2.680e-130
Identity = 239/344 (69.48%), Postives = 277/344 (80.52%), Query Frame = 0
Query:    1 MAFLLDSQMPLTALQPSRQKLMLNVIEEFHGPIVSTVAEVLIRAERTTLAELTRLVQRDQGIMAVSRAGKTKTKVTSANVKESLLIMMQHNMVKAAMPTERELRRARASGASQTTNIRLLYSLMPLEVLVRTRGPQFHSHASKTFSKVAGLVVDCFLRHGRRTLPDVKEEVLSRARGAAKARKALSQANEDGGEEDEED-EEVTGESIQKSFEELVMGKYIDKVAKLDLITPTVEPEKAKKPSMTFGAAAGSHGARGNGSSSNSGPNVKNTELAARQQKGAAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELPVEMRNMVNSI----GAGGANDGR 339
            MAFLL+SQMPL AL+ SR+KL+L+VIEE+HGPIVSTVAEVL+RAERTTLAELTRLV RDQGIM VSRAGKT+TKVT+ANVKESLLIM QHNMV AAMPTE+E+R+ARAS + +++NIRL Y+L+PLEVLVRTRGPQFHSHA+KTFSKVAGLVVDCFLRHGRRTLPDVKEE+L R   AA+ARKAL+   +       ++ +EVT ESIQKSFEELVM KYIDKV KLDL+TPTVEPEKAKKPSMTFGA A  + ++G  +S+ +G N +N ELA RQQKGAAQR                   XXXXXXXXXXXX   ELPVEMR++V+S+      GGA DGR
Sbjct:    1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRAERTTLAELTRLVLRDQGIMGVSRAGKTRTKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGRSSNIRLHYTLLPLEVLVRTRGPQFHSHAAKTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALANPEDXXXXXXXDNVQEVTSESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPA-DNDSKGKSASAANGQNGRNKELAERQQKGAAQRSARKRRMLGQDSNSNGVDGXXXXXXXXXXXX---ELPVEMRSLVSSMEEGFDGGGATDGR 340          
BLAST of mRNA_H-canaliculatus_F_contig1238.2024.1 vs. uniprot
Match: D7FMS5_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS5_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 3.420e-123
Identity = 212/290 (73.10%), Postives = 238/290 (82.07%), Query Frame = 0
Query:    1 MAFLLDSQMPLTALQPSRQKLMLNVIEEFHGPIVSTVAEVLIRAERTTLAELTRLVQRDQGIMAVSRAGKTKTKVTSANVKESLLIMMQHNMVKAAMPTERELRRARASGASQTTNIRLLYSLMPLEVLVRTRGPQFHSHASKTFSKVAGLVVDCFLRHGRRTLPDVKEEVLSRARGAAKARKALSQANEDGGEEDEED--EEVTGESIQKSFEELVMGKYIDKVAKLDLITPTVEPEKAKKPSMTFGAAAGSHGARGNGSSSN------SGPNVKNTELAARQQKGAAQ 282
            MAFLL+SQMPL AL+ SR+KL+L+VIEE+HGPIVSTVAEVL+RA+RTTLAELTRLV RDQGIM VSRAGKT TKVT+ANVKESLLIM QHNMV AAMPTE+E+R+ARAS + ++ NIRL Y+L+PLEVLVRTRGPQFHSHA++TFSKVAGLVVDCFLRHGRRTLPDVKEE+L R   AA+ARKAL+   ED       D  +EVT ESIQKSFEELVM KYIDKV KLDL+TPTVEPEKAKKPSMTFGA AGS                 +G N +N ELA RQQKGAAQ
Sbjct:    1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRADRTTLAELTRLVLRDQGIMGVSRAGKTITKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGRSGNIRLHYTLLPLEVLVRTRGPQFHSHAARTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALANP-EDXXXXXXXDHVQEVTPESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPAGSXXXXXXXXXXXXXXXXANGQNGRNKELAERQQKGAAQ 289          
BLAST of mRNA_H-canaliculatus_F_contig1238.2024.1 vs. uniprot
Match: A0A5J5AFJ9_9ASTE (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5AFJ9_9ASTE)

HSP 1 Score: 58.2 bits (139), Expect = 1.070e-5
Identity = 56/222 (25.23%), Postives = 100/222 (45.05%), Query Frame = 0
Query:   20 KLMLNVIEEFHGPIVSTVAEVLIRAERTTLAELTRLVQRDQGIMAVSRAGKTKTKVTSANVKESLLIMMQHNMVKAAMPTERELRRARASGASQTTNIRLLYSLMPLEVLVRTRGPQFHSHASKTFSKVAGLVVDCFLRHGRRTLPDVKEEVLSRARGAAKARKALSQANEDGGEEDEEDEEVTGESIQKSFEELVMGKYIDKV-AKLDLITPTVEPEKAKK 240
            KL +N+I  + G IV+ V E L+R    +L ++ RL                 T+++  NVK SLL+++QHN V+A    ++E       G  + T I   Y ++   ++   R P+F +  S+   K    + +  L+HGR ++     ++L R +  +   +  SQ                 E++Q++F  LV  +Y+++  A    + P  E E A K
Sbjct:    8 KLGINLISSYFGDIVAKVCECLLRKGTLSLGQIVRL-----------------TELSRENVKNSLLVLIQHNCVQA-FTIQQE------GGFQEETKIITQYMVLFDIIIHHMRFPKFLAIVSEDLGKECEEIFEGLLQHGRLSV----NQILERHKQTSNQSEGNSQ-----------------EAVQENFSRLVNARYVERCPAHQPFLAPLTEEETAAK 184          
BLAST of mRNA_H-canaliculatus_F_contig1238.2024.1 vs. uniprot
Match: A0A6P4M5S8_GOSAR (DNA-directed RNA polymerase III subunit RPC3 n=5 Tax=Gossypium TaxID=3633 RepID=A0A6P4M5S8_GOSAR)

HSP 1 Score: 55.5 bits (132), Expect = 6.730e-5
Identity = 57/223 (25.56%), Postives = 102/223 (45.74%), Query Frame = 0
Query:   20 KLMLNVIEEFHGPIVSTVAEVLIRAERTTLAELTRLVQRDQGIMAVSRAGKTKTKVTSANVKESLLIMMQHNMVKAAMPTERELRRARASGASQTTNIRLLYSLMPLEVLVRTRGPQFHSHASKTFSKVAGLVVDCFLRHGRRTLPDVKEEVLSRARGAAKARKALSQANEDGGEEDEEDEEVTGESIQKSFEELVMGKYIDKVAKLD--LITPTVEPEKAKK 240
            K  +N+I    G +V+ V E L+R    TL  + R                  T++TS+ VK SLL+++QHN V+A +  +         GA Q+T    L+      ++ R R P+F +  SK   K    +++  L+HGR +L    +++  RA+           + ++GG+          + +Q++F +L+   +I++    +  L  PT E E A+K
Sbjct:    8 KYAVNLITAHFGDLVAKVCECLLRKGPLTLQAIVR-----------------STELTSSQVKNSLLVLIQHNCVQAFILDQTG---EHGDGAKQSTQYIALFD----NIIQRWRFPKFLTMVSKKLDKQCAELLEGLLQHGRLSL----KQMFDRAK-----------SGQNGGD----------DVVQEAFVKLLNAHFIERCPASEPVLTNPTKEEEAARK 181          
BLAST of mRNA_H-canaliculatus_F_contig1238.2024.1 vs. uniprot
Match: A0A6P4MA18_GOSAR (DNA-directed RNA polymerase III subunit RPC3 n=15 Tax=Gossypium TaxID=3633 RepID=A0A6P4MA18_GOSAR)

HSP 1 Score: 55.5 bits (132), Expect = 7.760e-5
Identity = 57/223 (25.56%), Postives = 102/223 (45.74%), Query Frame = 0
Query:   20 KLMLNVIEEFHGPIVSTVAEVLIRAERTTLAELTRLVQRDQGIMAVSRAGKTKTKVTSANVKESLLIMMQHNMVKAAMPTERELRRARASGASQTTNIRLLYSLMPLEVLVRTRGPQFHSHASKTFSKVAGLVVDCFLRHGRRTLPDVKEEVLSRARGAAKARKALSQANEDGGEEDEEDEEVTGESIQKSFEELVMGKYIDKVAKLD--LITPTVEPEKAKK 240
            K  +N+I    G +V+ V E L+R    TL  + R                  T++TS+ VK SLL+++QHN V+A +  +         GA Q+T    L+      ++ R R P+F +  SK   K    +++  L+HGR +L    +++  RA+           + ++GG+          + +Q++F +L+   +I++    +  L  PT E E A+K
Sbjct:    8 KYAVNLITAHFGDLVAKVCECLLRKGPLTLQAIVR-----------------STELTSSQVKNSLLVLIQHNCVQAFILDQTG---EHGDGAKQSTQYIALFD----NIIQRWRFPKFLTMVSKKLDKQCAELLEGLLQHGRLSL----KQMFDRAK-----------SGQNGGD----------DVVQEAFVKLLNAHFIERCPASEPVLTNPTKEEEAARK 181          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1238.2024.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JM01_9PHAE2.680e-13069.48DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
D7FMS5_ECTSI3.420e-12373.10DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A5J5AFJ9_9ASTE1.070e-525.23DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A6P4M5S8_GOSAR6.730e-525.56DNA-directed RNA polymerase III subunit RPC3 n=5 T... [more]
A0A6P4MA18_GOSAR7.760e-525.56DNA-directed RNA polymerase III subunit RPC3 n=15 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 16..103
e-value: 7.5E-6
score: 28.0
IPR039748DNA-directed RNA polymerase III subunit RPC3PANTHERPTHR12949RNA POLYMERASE III DNA DIRECTED -RELATEDcoord: 18..289

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1238contigH-canaliculatus_F_contig1238:21810..27614 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1238.2024.1mRNA_H-canaliculatus_F_contig1238.2024.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1238 20751..27614 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1238.2024.1 ID=prot_H-canaliculatus_F_contig1238.2024.1|Name=mRNA_H-canaliculatus_F_contig1238.2024.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=339bp
MAFLLDSQMPLTALQPSRQKLMLNVIEEFHGPIVSTVAEVLIRAERTTLA
ELTRLVQRDQGIMAVSRAGKTKTKVTSANVKESLLIMMQHNMVKAAMPTE
RELRRARASGASQTTNIRLLYSLMPLEVLVRTRGPQFHSHASKTFSKVAG
LVVDCFLRHGRRTLPDVKEEVLSRARGAAKARKALSQANEDGGEEDEEDE
EVTGESIQKSFEELVMGKYIDKVAKLDLITPTVEPEKAKKPSMTFGAAAG
SHGARGNGSSSNSGPNVKNTELAARQQKGAAQRSARKRRMLGHASNGGGG
GGGGKGEEEEDDSDDEDELPVEMRNMVNSIGAGGANDGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039748RPC3
IPR036388WH-like_DNA-bd_sf