prot_H-canaliculatus_F_contig1219.1883.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1219.1883.1
Unique Nameprot_H-canaliculatus_F_contig1219.1883.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length206
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1219.1883.1 vs. uniprot
Match: D7G4T6_ECTSI (Plastid protein-export protein secB, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4T6_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 8.690e-73
Identity = 131/203 (64.53%), Postives = 150/203 (73.89%), Query Frame = 0 
Query:   12 IFCSCVMLPLLSSAFVVVP---SSVSASRRALWSRHADAVQLSGTPVVRRAR----SLPGKRPTGVKVTVLEATTD-GSEQLREQQPPETPTEQQR-EAARGRQLNIACNDVVRTILDGNPSNEKERAEALRERLLAQRDELVSPDDRMSALFFDNLLLVCQHELHPDIGVLRGQYGKAWHTILHYIEDAGWQLTDPPFSISG 205
            +  SCV L L  S F+VVP   S +SA RRA       AV+   +   R AR    S  G+RP  V    L+ATTD  SEQ REQ   E      R EAAR +QLNIACNDVVRTILDGNP+NEKERAEALR+RL++Q+D+LVSP+D MSALFFDNLLLVC+HELHPDIG+LRGQYGKAW+TILHY+EDAGWQLTDPPFSISG
Sbjct:    4 VLASCVFLSLPCSGFIVVPANSSPLSAYRRA-------AVRPPASSSRRLARCEGGSWVGERPAAVNAIALQATTDDNSEQAREQPTQEASLAAARQEAARSKQLNIACNDVVRTILDGNPTNEKERAEALRQRLISQKDDLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQYGKAWNTILHYVEDAGWQLTDPPFSISG 199
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BLAST of mRNA_H-canaliculatus_F_contig1219.1883.1 vs. uniprot
Match: A0A836CL25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL25_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.190e-29
Identity = 49/99 (49.49%), Postives = 71/99 (71.72%), Query Frame = 0 
Query:  107 LNIACNDVVRTILDGNPSNEKERAEALRERLLAQRDELVSPDDRMSALFFDNLLLVCQHELHPDIGVLRGQYGKAWHTILHYIEDAGWQLTDPPFSISG 205
            LNIACNDV++TIL  +        + ++ERL+  ++ LV  DD  S LF++NL+ VC+H LHP +  L+G+Y  AW ++LH+IEDAGWQLT+PPF ++G
Sbjct:   58 LNIACNDVIKTILKADAEKLDSDMQGIKERLIRDKELLVVTDDPQSELFYNNLVCVCEHSLHPRLHELKGRYASAWKSMLHWIEDAGWQLTEPPFRVNG 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1219.1883.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4T6_ECTSI8.690e-7364.53Plastid protein-export protein secB, putative n=2 ... [more]
A0A836CL25_9STRA1.190e-2949.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..205
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.78
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1219contigH-canaliculatus_F_contig1219:26534..27624 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1219.1883.1mRNA_H-canaliculatus_F_contig1219.1883.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1219 26534..27624 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1219.1883.1 ID=prot_H-canaliculatus_F_contig1219.1883.1|Name=mRNA_H-canaliculatus_F_contig1219.1883.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=206bp
MLPRGTRSVVVIFCSCVMLPLLSSAFVVVPSSVSASRRALWSRHADAVQL
SGTPVVRRARSLPGKRPTGVKVTVLEATTDGSEQLREQQPPETPTEQQRE
AARGRQLNIACNDVVRTILDGNPSNEKERAEALRERLLAQRDELVSPDDR
MSALFFDNLLLVCQHELHPDIGVLRGQYGKAWHTILHYIEDAGWQLTDPP
FSISG*
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