prot_H-canaliculatus_F_contig10105.138.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig10105.138.1
Unique Nameprot_H-canaliculatus_F_contig10105.138.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length194
Homology
BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Match: D7FSP3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP3_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.280e-13
Identity = 82/216 (37.96%), Postives = 98/216 (45.37%), Query Frame = 0
Query:    3 NNNGGCDFDGGDCCFCDCTDGVDYDCNQNGFDCIDPSSSCSEAHWTEERHGATSS----------GRASVDSTREQYSFSKIERKRYSSSTVGYAAVAIRPGLLSTSGSSS--VGAIVXXXXXXLLFVAAAIILAFLFKTGRLKPCQCCSRTVPVVVATPTPG--GVTAT----PAKAYPVVPQDHGDAPRPPAYGASEGG------SAPPPYNPV 194
            NNN GC++DGGDCC CDC D   Y+C  +GF C+DPSSSC+  H+ ++      S          G  S                    ST G A      G+ S  G     V    XXXXXX  F+AAA +L  LF T RLK  +CCS   P     P  G   V AT    P  A P       D P PPAYG+S+ G      SAPP  +PV
Sbjct:   44 NNNSGCEYDGGDCCSCDCFDDT-YECGTDGFTCLDPSSSCTYHHYYDDDGDLYDSPTYDYDVDDFGDDSXXXXXXXXXXXXXXXXXXXXSTSG-ALDLEGGGIPSDDGDDGAPVXXXXXXXXXXTAFLAAAAVLVCLFVTCRLKCSKCCSSPGPPAAPAPPAGHGSVQATTKTFPGPAAPAAAAPASDLPPPPAYGSSDHGATSTATSAPPDTHPV 257          
BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Match: A0A6H5K5D1_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5D1_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 9.020e-7
Identity = 26/40 (65.00%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    3 NNNGGCDFDGGDCCFCDCTDGVDYDCNQNGFDCIDPSSSC 42
            NN  GCD+DGGDCC CDC D   Y C   GF CIDP+SSC
Sbjct:   44 NNISGCDYDGGDCCSCDCLDDT-YQCGVVGFTCIDPTSSC 82          
BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.990e-6
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 0
Query:    4 NNGGCDFDGGDCCFCDCTDGVDYDCNQNGFDCIDPSSSCSEAHWT 48
            N+  C++DGGDCC CDC D   YDC   G+DC+DP+SSCS++  T
Sbjct:  425 NHADCEWDGGDCCECDCVDAT-YDCGVVGYDCLDPTSSCSDSPGT 468          
BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Match: A0A6H5KN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN00_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.520e-6
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 0
Query:    3 NNNGGCDFDGGDCCFCDCTDGVDYDCNQ-NGFDCIDPSSSCSEAHWTEE 50
            NNN  CD+DGGDCC CDC D   Y+C     F CIDPSSSC+  H+ ++
Sbjct:  143 NNNSNCDYDGGDCCSCDCFDDT-YECGSVTAFTCIDPSSSCTYHHYXDD 190          
BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.330e-5
Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 0
Query:    1 AGNNNGGCDFDGGDCCFCDCTD-GVDYDCNQNGFDCIDPSSSCSEAHWTEERHGATSSGRASVD 63
            +GNNN  CD+DGGDCC CDC D G  Y+C   G+ C+D +S C         +G+TS G    D
Sbjct:  371 SGNNNAACDYDGGDCCECDCYDYGEAYECGAFGYYCLDQTSIC---------YGSTSGGNFDSD 425          
BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Match: D7FSN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN8_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 8.260e-5
Identity = 64/195 (32.82%), Postives = 74/195 (37.95%), Query Frame = 0
Query:    8 CDFDGGDCCFCDCTDGVDYDCNQNGFDCIDPSSSCSEAHWTEERHGATSSGRASVDSTREQYSFSKIERKRYSSSTVGYAAVAIRPGLLSTSGSSSVGAIVXXXXXXLLFVAAAIILAFLFKTGRLKPCQC---CSRTVPVVVATPTP--------GGVTATPAKAYPVVPQDHGDAPRPPAYGASEG-GSAPPP 190
            CD+DGGDCC CDC D + Y C    +DC++PS+ C          G        V                                         VGAIV      +LF+AA IILA LFK G LKPC C   C+   P   AT           GG   +  K YP V      A  PPA  A EG GS P P
Sbjct:   80 CDWDGGDCCECDCVDAL-YTCGVADYDCLNPSA-C----------GGDEDDXXDVP----------------------------------------VGAIVGGVIGGVLFLAAVIILAVLFKKGCLKPCACGDSCACCEPGPPATXXXXXXXXXAGGGSAPSVVKGYPEVYSSAAVAQLPPA--AYEGPGSVPAP 220          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FSP3_ECTSI1.280e-1337.96LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K5D1_9PHAE9.020e-765.00LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JVP4_9PHAE1.990e-655.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN00_9PHAE2.520e-655.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6K0_9PHAE3.330e-545.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSN8_ECTSI8.260e-532.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 129..194
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..103
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 104..128
NoneNo IPR availableTMHMMTMhelixcoord: 79..96
NoneNo IPR availableTMHMMTMhelixcoord: 106..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10105contigH-canaliculatus_F_contig10105:882..4063 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10105.138.1mRNA_H-canaliculatus_F_contig10105.138.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig10105 882..4063 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig10105.138.1 ID=prot_H-canaliculatus_F_contig10105.138.1|Name=mRNA_H-canaliculatus_F_contig10105.138.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=194bp
AGNNNGGCDFDGGDCCFCDCTDGVDYDCNQNGFDCIDPSSSCSEAHWTEE
RHGATSSGRASVDSTREQYSFSKIERKRYSSSTVGYAAVAIRPGLLSTSG
SSSVGAIVGGVIGGLLFVAAAIILAFLFKTGRLKPCQCCSRTVPVVVATP
TPGGVTATPAKAYPVVPQDHGDAPRPPAYGASEGGSAPPPYNPV
back to top