mRNA_H-canaliculatus_F_contig10105.138.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Match: D7FSP3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP3_ECTSI) HSP 1 Score: 77.0 bits (188), Expect = 1.280e-13 Identity = 82/216 (37.96%), Postives = 98/216 (45.37%), Query Frame = 1 Query: 7 NNNGGCDFDGGDCCFCDCTDGVDYDCNQNGFDCIDPSSSCSEAHWTEERHGATSS----------GRASVDSTREQYSFSKIERKRYSSSTVGYAAVAIRPGLLSTSGSSS--VGAIVXXXXXXLLFVAAAIILAFLFKTGRLKPCQCCSRTVPVVVATPTPG--GVTAT----PAKAYPVVPQDHGDAPRPPAYGASEGG------SAPPPYNPV 582
NNN GC++DGGDCC CDC D Y+C +GF C+DPSSSC+ H+ ++ S G S ST G A G+ S G V XXXXXX F+AAA +L LF T RLK +CCS P P G V AT P A P D P PPAYG+S+ G SAPP +PV
Sbjct: 44 NNNSGCEYDGGDCCSCDCFDDT-YECGTDGFTCLDPSSSCTYHHYYDDDGDLYDSPTYDYDVDDFGDDSXXXXXXXXXXXXXXXXXXXXSTSG-ALDLEGGGIPSDDGDDGAPVXXXXXXXXXXTAFLAAAAVLVCLFVTCRLKCSKCCSSPGPPAAPAPPAGHGSVQATTKTFPGPAAPAAAAPASDLPPPPAYGSSDHGATSTATSAPPDTHPV 257
BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Match: A0A6H5K5D1_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5D1_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 9.020e-7 Identity = 26/40 (65.00%), Postives = 28/40 (70.00%), Query Frame = 1 Query: 7 NNNGGCDFDGGDCCFCDCTDGVDYDCNQNGFDCIDPSSSC 126
NN GCD+DGGDCC CDC D Y C GF CIDP+SSC
Sbjct: 44 NNISGCDYDGGDCCSCDCLDDT-YQCGVVGFTCIDPTSSC 82
BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 1.990e-6 Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 1 Query: 10 NNGGCDFDGGDCCFCDCTDGVDYDCNQNGFDCIDPSSSCSEAHWT 144
N+ C++DGGDCC CDC D YDC G+DC+DP+SSCS++ T
Sbjct: 425 NHADCEWDGGDCCECDCVDAT-YDCGVVGYDCLDPTSSCSDSPGT 468
BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Match: A0A6H5KN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN00_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 2.520e-6 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1 Query: 7 NNNGGCDFDGGDCCFCDCTDGVDYDCNQ-NGFDCIDPSSSCSEAHWTEE 150
NNN CD+DGGDCC CDC D Y+C F CIDPSSSC+ H+ ++
Sbjct: 143 NNNSNCDYDGGDCCSCDCFDDT-YECGSVTAFTCIDPSSSCTYHHYXDD 190
BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 3.330e-5 Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 1 Query: 1 AGNNNGGCDFDGGDCCFCDCTD-GVDYDCNQNGFDCIDPSSSCSEAHWTEERHGATSSGRASVD 189
+GNNN CD+DGGDCC CDC D G Y+C G+ C+D +S C +G+TS G D
Sbjct: 371 SGNNNAACDYDGGDCCECDCYDYGEAYECGAFGYYCLDQTSIC---------YGSTSGGNFDSD 425
BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Match: D7FSN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN8_ECTSI) HSP 1 Score: 52.4 bits (124), Expect = 8.260e-5 Identity = 64/195 (32.82%), Postives = 74/195 (37.95%), Query Frame = 1 Query: 22 CDFDGGDCCFCDCTDGVDYDCNQNGFDCIDPSSSCSEAHWTEERHGATSSGRASVDSTREQYSFSKIERKRYSSSTVGYAAVAIRPGLLSTSGSSSVGAIVXXXXXXLLFVAAAIILAFLFKTGRLKPCQC---CSRTVPVVVATPTP--------GGVTATPAKAYPVVPQDHGDAPRPPAYGASEG-GSAPPP 570
CD+DGGDCC CDC D + Y C +DC++PS+ C G V VGAIV +LF+AA IILA LFK G LKPC C C+ P AT GG + K YP V A PPA A EG GS P P
Sbjct: 80 CDWDGGDCCECDCVDAL-YTCGVADYDCLNPSA-C----------GGDEDDXXDVP----------------------------------------VGAIVGGVIGGVLFLAAVIILAVLFKKGCLKPCACGDSCACCEPGPPATXXXXXXXXXAGGGSAPSVVKGYPEVYSSAAVAQLPPA--AYEGPGSVPAP 220 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10105.138.1 >prot_H-canaliculatus_F_contig10105.138.1 ID=prot_H-canaliculatus_F_contig10105.138.1|Name=mRNA_H-canaliculatus_F_contig10105.138.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=194bp AGNNNGGCDFDGGDCCFCDCTDGVDYDCNQNGFDCIDPSSSCSEAHWTEEback to top mRNA from alignment at H-canaliculatus_F_contig10105:882..4063+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10105.138.1 ID=mRNA_H-canaliculatus_F_contig10105.138.1|Name=mRNA_H-canaliculatus_F_contig10105.138.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3182bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10105:882..4063+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10105:882..4063+ >mRNA_H-canaliculatus_F_contig10105.138.1 ID=mRNA_H-canaliculatus_F_contig10105.138.1|Name=mRNA_H-canaliculatus_F_contig10105.138.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1164bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10105:882..4063+ (Hapterophycus canaliculatus Oshoro5f female)back to top |