mRNA_H-canaliculatus_F_contig15125.3846.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15125.3846.1
Unique NamemRNA_H-canaliculatus_F_contig15125.3846.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15125.3846.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.950e-28
Identity = 54/88 (61.36%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICFESGINIEYTATHTPLQNGVSERDGQTLAKIVRYLIKDGTFPPSIGGELFFTTAYLRNRFPHSALGGHPP 264
            +RCD+G E  ++E  T C +SGI IEY AT+TP QNGVSERDGQTL  I R L+K+G FPP++ GEL  T  YL NR PHSALGG  P
Sbjct:  232 IRCDRGRENVANEFTTYCMDSGITIEYAATNTPQQNGVSERDGQTLTTITRCLMKNGAFPPTLCGELMMTAVYLSNRSPHSALGGVTP 319
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15125.3846.1 vs. uniprot
Match: A0A6H5K2K7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2K7_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 3.330e-28
Identity = 54/88 (61.36%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICFESGINIEYTATHTPLQNGVSERDGQTLAKIVRYLIKDGTFPPSIGGELFFTTAYLRNRFPHSALGGHPP 264
            +RCDKG E    E +     S I +EY AT+TP Q GVSERDGQTLA + R L+KDG FPPSI GEL  T AYL NR PHSALGG  P
Sbjct:   61 IRCDKGGENTGSEFRDYSNNSAIKLEYPATNTPRQIGVSERDGQTLAGVARCLLKDGDFPPSIWGELMLTAAYLLNRCPHSALGGATP 148
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15125.3846.1 vs. uniprot
Match: A0A6H5KV62_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV62_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.540e-27
Identity = 51/88 (57.95%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICFESGINIEYTATHTPLQNGVSERDGQTLAKIVRYLIKDGTFPPSIGGELFFTTAYLRNRFPHSALGGHPP 264
            +RCDKG E    E +  C  S I +EY AT+TP Q GVS RDGQ+LA++ R L+KDG FPPS+ GEL  T AYL NR PH ALGG  P
Sbjct:   62 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSGRDGQSLAEVTRCLVKDGDFPPSMWGELMLTAAYLLNRSPHLALGGATP 149
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15125.3846.1 vs. uniprot
Match: A0A6H5JCI9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCI9_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.870e-27
Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICFESGINIEYTATHTPLQNGVSERDGQTLAKIVRYLIKDGTFPPSIGGELFFTTAYLRNRFPHSALGGHPP 264
            LRCDKG E P +E +  C ES I +E+ AT+TP + GVSERDGQTLA + R L++DG FP  + GEL  TTAYL NR  H+ALGG  P
Sbjct:  183 LRCDKGGENPGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTTAYLTNRIAHAALGGATP 270
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15125.3846.1 vs. uniprot
Match: A0A6H5K5H2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H2_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.960e-27
Identity = 54/88 (61.36%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICFESGINIEYTATHTPLQNGVSERDGQTLAKIVRYLIKDGTFPPSIGGELFFTTAYLRNRFPHSALGGHPP 264
            +RCDKG E    E +  C  S I +EY AT+TP Q GVSERDGQTLA + R L+KDG FPPS+ GEL  T AYL NR PHSALGG  P
Sbjct:   37 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 124
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15125.3846.1 vs. uniprot
Match: A0A6H5KF63_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF63_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.330e-27
Identity = 52/88 (59.09%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICFESGINIEYTATHTPLQNGVSERDGQTLAKIVRYLIKDGTFPPSIGGELFFTTAYLRNRFPHSALGGHPP 264
            +RCDKG E    + +  C  S I +EY AT+TP Q GVSERDGQTLA + R L+KDG FPPS+ GE+  T AYL NR PHSALGG  P
Sbjct:  125 IRCDKGGENTGSDFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGEIMLTAAYLLNRSPHSALGGATP 212
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15125.3846.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 4.040e-27
Identity = 54/88 (61.36%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICFESGINIEYTATHTPLQNGVSERDGQTLAKIVRYLIKDGTFPPSIGGELFFTTAYLRNRFPHSALGGHPP 264
            +RCDKG E    E +  C  S I +EY AT+TP Q GVSERDGQTLA + R L+KDG FPPS+ GEL  T AYL NR PHSALGG  P
Sbjct:  495 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 582
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15125.3846.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 4.390e-27
Identity = 54/88 (61.36%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICFESGINIEYTATHTPLQNGVSERDGQTLAKIVRYLIKDGTFPPSIGGELFFTTAYLRNRFPHSALGGHPP 264
            +RCDKG E    E +  C  S I +EY AT+TP Q GVSERDGQTLA + R L+KDG FPPS+ GEL  T AYL NR PHSALGG  P
Sbjct:  171 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 258
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15125.3846.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 4.430e-27
Identity = 54/88 (61.36%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICFESGINIEYTATHTPLQNGVSERDGQTLAKIVRYLIKDGTFPPSIGGELFFTTAYLRNRFPHSALGGHPP 264
            +RCDKG E    E +  C  S I +EY AT+TP Q GVSERDGQTLA + R L+KDG FPPS+ GEL  T AYL NR PHSALGG  P
Sbjct:  367 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 454
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15125.3846.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 4.450e-27
Identity = 54/88 (61.36%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICFESGINIEYTATHTPLQNGVSERDGQTLAKIVRYLIKDGTFPPSIGGELFFTTAYLRNRFPHSALGGHPP 264
            +RCDKG E    E +  C  S I +EY AT+TP Q GVSERDGQTLA + R L+KDG FPPS+ GEL  T AYL NR PHSALGG  P
Sbjct:  171 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 258
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15125.3846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT61_9PHAE1.950e-2861.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2K7_9PHAE3.330e-2861.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KV62_9PHAE1.540e-2757.95Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JCI9_9PHAE2.870e-2757.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K5H2_9PHAE2.960e-2761.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KF63_9PHAE3.330e-2759.09Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KVF6_9PHAE4.040e-2761.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE4.390e-2761.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSL6_9PHAE4.430e-2761.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRJ1_9PHAE4.450e-2761.36Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15125contigH-canaliculatus_F_contig15125:2080..2346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score72.0
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog7029.ACYPI24114-PA
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929255.1139216-CDS-H-canaliculatus_F_contig15125:2079..23461622929255.1139216-CDS-H-canaliculatus_F_contig15125:2079..2346Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15125 2080..2346 +
1696845738.1676788-CDS-H-canaliculatus_F_contig15125:2079..23461696845738.1676788-CDS-H-canaliculatus_F_contig15125:2079..2346Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15125 2080..2346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15125.3846.1prot_H-canaliculatus_F_contig15125.3846.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15125 2080..2346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15125.3846.1

>prot_H-canaliculatus_F_contig15125.3846.1 ID=prot_H-canaliculatus_F_contig15125.3846.1|Name=mRNA_H-canaliculatus_F_contig15125.3846.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=89bp
LRCDKGTEYPSDESKTICFESGINIEYTATHTPLQNGVSERDGQTLAKIV
RYLIKDGTFPPSIGGELFFTTAYLRNRFPHSALGGHPP*
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mRNA from alignment at H-canaliculatus_F_contig15125:2080..2346+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15125.3846.1 ID=mRNA_H-canaliculatus_F_contig15125.3846.1|Name=mRNA_H-canaliculatus_F_contig15125.3846.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=267bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15125:2080..2346+ (Hapterophycus canaliculatus Oshoro5f female)
CTGCGCTGCGACAAGGGCACGGAATATCCCTCGGACGAATCCAAGACGAT
CTGCTTCGAGAGCGGCATCAACATCGAGTACACTGCCACGCACACGCCAC
TACAGAACGGAGTGTCCGAGCGCGACGGGCAGACACTGGCCAAGATCGTC
CGATACCTGATTAAGGACGGCACTTTCCCCCCTTCCATAGGGGGTGAACT
CTTCTTTACAACGGCGTACCTACGCAACAGGTTCCCTCACTCAGCCCTCG
GTGGACATCCCCCCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15125:2080..2346+

>mRNA_H-canaliculatus_F_contig15125.3846.1 ID=mRNA_H-canaliculatus_F_contig15125.3846.1|Name=mRNA_H-canaliculatus_F_contig15125.3846.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=534bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15125:2080..2346+ (Hapterophycus canaliculatus Oshoro5f female)
CTGCGCTGCGACAAGGGCACGGAATATCCCTCGGACGAATCCAAGACGAT
CTGCTTCGAGAGCGGCATCAACATCGAGTACACTGCCACGCACACGCCAC
TACAGAACGGAGTGTCCGAGCGCGACGGGCAGACACTGGCCAAGATCGTC
CGATACCTGATTAAGGACGGCACTTTCCCCCCTTCCATAGGGGGTGAACT
CTTCTTTACAACGGCGTACCTACGCAACAGGTTCCCTCACTCAGCCCTCG
GTGGACATCCCCCCTAGCTGCGCTGCGACAAGGGCACGGAATATCCCTCG
GACGAATCCAAGACGATCTGCTTCGAGAGCGGCATCAACATCGAGTACAC
TGCCACGCACACGCCACTACAGAACGGAGTGTCCGAGCGCGACGGGCAGA
CACTGGCCAAGATCGTCCGATACCTGATTAAGGACGGCACTTTCCCCCCT
TCCATAGGGGGTGAACTCTTCTTTACAACGGCGTACCTACGCAACAGGTT
CCCTCACTCAGCCCTCGGTGGACATCCCCCCTAG
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