mRNA_H-canaliculatus_F_contig1512.3844.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1512.3844.1
Unique NamemRNA_H-canaliculatus_F_contig1512.3844.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1512.3844.1 vs. uniprot
Match: D7G757_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G757_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 2.770e-13
Identity = 49/102 (48.04%), Postives = 60/102 (58.82%), Query Frame = 1 
Query:   58 MSGYSTLQSIVLATW--ILFLVFRFARDWNSRDSTPSNMHVPNEARSGGTRVQDEDRLDGTRSETNVPLAYREAAAQNNGHVPRGSSASRVAQEAATPEVRE 357
            MSG++T Q I       ++  +F FAR  +    T       +EA+ GGT  + +    G RSETNV LAY EAA QN G VPRGSSAS VA+ AATP VRE
Sbjct:    1 MSGFTTPQWIAFTFLGVVIGCLFCFARSDSKHIGT-------SEAQRGGTDQEQDHHATGARSETNVRLAYHEAAVQNGGQVPRGSSASVVARNAATPAVRE 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1512.3844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G757_ECTSI2.770e-1348.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1512contigH-canaliculatus_F_contig1512:11477..13015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_010960.1
Exons2
Model size430
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929254.9834301-CDS-H-canaliculatus_F_contig1512:11478..117251622929254.9834301-CDS-H-canaliculatus_F_contig1512:11478..11725Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1512 11479..11725 -
1696845738.123293-CDS-H-canaliculatus_F_contig1512:11478..117251696845738.123293-CDS-H-canaliculatus_F_contig1512:11478..11725Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1512 11479..11725 -
1622929255.0007994-CDS-H-canaliculatus_F_contig1512:12836..130151622929255.0007994-CDS-H-canaliculatus_F_contig1512:12836..13015Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1512 12837..13015 -
1696845738.1331582-CDS-H-canaliculatus_F_contig1512:12836..130151696845738.1331582-CDS-H-canaliculatus_F_contig1512:12836..13015Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1512 12837..13015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1512.3844.1prot_H-canaliculatus_F_contig1512.3844.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1512 11479..13015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1512.3844.1

>prot_H-canaliculatus_F_contig1512.3844.1 ID=prot_H-canaliculatus_F_contig1512.3844.1|Name=mRNA_H-canaliculatus_F_contig1512.3844.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=142bp
SSSPCASPTFVTSFSPRCEMSGYSTLQSIVLATWILFLVFRFARDWNSRD
STPSNMHVPNEARSGGTRVQDEDRLDGTRSETNVPLAYREAAAQNNGHVP
RGSSASRVAQEAATPEVRELYRRESRVHGFVRSGSLAALTMT
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mRNA from alignment at H-canaliculatus_F_contig1512:11477..13015-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1512.3844.1 ID=mRNA_H-canaliculatus_F_contig1512.3844.1|Name=mRNA_H-canaliculatus_F_contig1512.3844.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1539bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1512:11477..13015- (Hapterophycus canaliculatus Oshoro5f female)
TCCTCGAGCCCCTGCGCCTCTCCCACTTTCGTAACGTCCTTCTCTCCCCG
CTGCGAGATGTCAGGATACTCGACGCTGCAGTCCATCGTTCTGGCGACAT
GGATATTGTTCCTAGTTTTTCGCTTTGCCCGCGACTGGAACAGTCGAGAT
TCCACTCCTTCGAACATGCACGTCCCGAAGTAAGTCTGTAGTACTTGTAG
GTATGAAACGTAAACGTGAAGTATAGACCACGAGAAGATACAAGCTCGCG
CCTCAATCAAGGCTGCAAGATATGAAGTCAAGATATATCTGCTCGAGCAT
CCGTTCACTGCTTGCACCAGGTCTGGTCATTGCCGAACACAGCTTTACAT
TTCGTAGCTCGACTCTCTCTGCGGATGAATCGGGTTCAAATAAACACACA
AGAACAACTCAGCGTTCTTGTTACTCATGACGAAGAGATACAGCAGCATA
CAGTAGGTAAGCGAAGGATTAGGACAGTTTTTTCAAAGCGAAAAAAAACG
GCCAGCCTGTTTCCAGGAACCTCTTCCCGATCCTTCGTTCTGATGAAGGG
GCTTGGTCGTGTTGATCTTGTGGGAGCTTGGAAAAAGTGGCTGCTACACC
TCATTCTTCGTCACGACAACACGACACGGAATAACAAATACATGCGACAT
CTGGGGGGGTCTGAGATGTCACCAGCTTTCAGTGGTCTACGGGGCTTCCG
TCGCTTTTGAAGACGAAACAACAGCAACAGCAATAATAACAGCAGTGCTG
GCTGCTAGCGGGATAGTAAATTGGATAAACTACTGCAACTTTCTTCCCGG
GGCGGTTTGTCTTCTCGAAATACGAGCGCAGGACACGTAAGAGATACATT
CTCGACGAACATTTTGTACTCGACGTCTATCTTATGGAAGAAGTCTCGTT
GACTGCTTGCAACTAATGATGTTCGTGAATGTACACTGCTGTTTTCTACA
CGCACGACCAGAACCTGGCTGGTTCAAAACAGGCGTTCCACCCGTGGTTT
CCTGGTGAAAAGGTCTAGACCCTGGCGCACATGTAAACGTGGTCCTACCG
AGCGAGCGACATTTGTTTGTGTCTGATGGTGAATTAATTCTTTCGGCAGG
TCTCCTTCATCTCGACTGCTTTGCTGTCCGTAGATATTTACGGTGATCGT
CGGATGATTGTGGACTACAACTAACCGTTCTCATATATGCGCAGTATAAA
TTAAGAAGGCAGTTTCCCCATCGATCGAGGCGAAAATCGTTAACTCCGCG
GCTTCACAATACGCGACTTCCGCCTCGCTGCCATTTTTAGCGAAGCGCGA
AGCGGTGGCACAAGAGTGCAAGACGAAGACCGATTGGACGGGACAAGGTC
GGAGACCAATGTACCGCTCGCGTATCGCGAGGCTGCCGCGCAAAACAATG
GGCATGTGCCGCGCGGATCTTCCGCGTCGAGGGTTGCACAGGAGGCAGCA
ACCCCAGAAGTTCGTGAGTTATACCGACGAGAGTCCAGAGTCCACGGGTT
CGTTCGCAGTGGAAGCCTTGCGGCCCTAACGATGACCGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1512:11477..13015-

>mRNA_H-canaliculatus_F_contig1512.3844.1 ID=mRNA_H-canaliculatus_F_contig1512.3844.1|Name=mRNA_H-canaliculatus_F_contig1512.3844.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=852bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1512:11477..13015- (Hapterophycus canaliculatus Oshoro5f female)
TCCTCGAGCCCCTGCGCCTCTCCCACTTTCGTAACGTCCTTCTCTCCCCG
CTGCGAGATGTCAGGATACTCGACGCTGCAGTCCATCGTTCTGGCGACAT
GGATATTGTTCCTAGTTTTTCGCTTTGCCCGCGACTGGAACAGTCGAGAT
TCCACTCCTTCGAACATGCACGTCCCGAATCCTCGAGCCCCTGCGCCTCT
CCCACTTTCGTAACGTCCTTCTCTCCCCGCTGCGAGATGTCAGGATACTC
GACGCTGCAGTCCATCGTTCTGGCGACATGGATATTGTTCCTAGTTTTTC
GCTTTGCCCGCGACTGGAACAGTCGAGATTCCACTCCTTCGAACATGCAC
GTCCCGAACGAAGCGCGAAGCGGTGGCACAAGAGTGCAAGACGAAGACCG
ATTGGACGGGACAAGGTCGGAGACCAATGTACCGCTCGCGTATCGCGAGG
CTGCCGCGCAAAACAATGGGCATGTGCCGCGCGGATCTTCCGCGTCGAGG
GTTGCACAGGAGGCAGCAACCCCAGAAGTTCGTGAGTTATACCGACGAGA
GTCCAGAGTCCACGGGTTCGTTCGCAGTGGAAGCCTTGCGGCCCTAACGA
TGACCCGAAGCGCGAAGCGGTGGCACAAGAGTGCAAGACGAAGACCGATT
GGACGGGACAAGGTCGGAGACCAATGTACCGCTCGCGTATCGCGAGGCTG
CCGCGCAAAACAATGGGCATGTGCCGCGCGGATCTTCCGCGTCGAGGGTT
GCACAGGAGGCAGCAACCCCAGAAGTTCGTGAGTTATACCGACGAGAGTC
CAGAGTCCACGGGTTCGTTCGCAGTGGAAGCCTTGCGGCCCTAACGATGA
CC
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