mRNA_H-canaliculatus_F_contig15111.3840.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15111.3840.1
Unique NamemRNA_H-canaliculatus_F_contig15111.3840.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig15111.3840.1 vs. uniprot
Match: D8LR94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR94_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 9.860e-24
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 1
Query:   13 VQETVFQCLQSWVRHVNVPGDELVRNPLLPAAFAALGNQELFETAVDVLVEVSR 174
            VQETVFQCLQSWVRHVNVPGDE+VRNPLL AAF ALGNQELFETAVD+LVEV R
Sbjct:  262 VQETVFQCLQSWVRHVNVPGDEVVRNPLLSAAFDALGNQELFETAVDLLVEVLR 315          
BLAST of mRNA_H-canaliculatus_F_contig15111.3840.1 vs. uniprot
Match: A0A835Z666_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z666_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.860e-13
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1
Query:   13 VQETVFQCLQSWVRHVNVPGDELVRNPLLPAAFAALGNQELFETAVDVLVEVSR 174
            VQET+FQCLQSWVR+ ++P  +L  +PL PAAF AL   +LFE A D+LV+V R
Sbjct:  203 VQETIFQCLQSWVRYTSIPPADLAAHPLFPAAFDALRTPDLFEAAADLLVQVLR 256          
BLAST of mRNA_H-canaliculatus_F_contig15111.3840.1 vs. uniprot
Match: M4BQJ6_HYAAE (Xpo1 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BQJ6_HYAAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.310e-7
Identity = 27/62 (43.55%), Postives = 36/62 (58.06%), Query Frame = 1
Query:    1 DRPTVQETVFQCLQSWVRHVNVPGDELVRNPLLPAAFAALGNQELFETAVDVLVEVSRFSED 186
            D    QE V + L SW  +  VP + +VRNPLL +  +  G  ELF+TAVD+ VEV +   D
Sbjct:  246 DSVETQEIVLRALTSWFGYARVPSEVVVRNPLLHSLLSFFGRDELFDTAVDLAVEVVKSCSD 307          
BLAST of mRNA_H-canaliculatus_F_contig15111.3840.1 vs. uniprot
Match: A0A409V8A8_9AGAR (Importin N-terminal domain-containing protein n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409V8A8_9AGAR)

HSP 1 Score: 54.7 bits (130), Expect = 4.560e-7
Identity = 24/58 (41.38%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   13 VQETVFQCLQSWVRHVNVPGDELVRNPLLPAAFAALGNQELFETAVDVLVEVSRFSED 186
            VQ  +F CL +W+    +P  EL   PLL  AF ALG+ ELF+ AVDV+ ++   +++
Sbjct:  196 VQTQIFHCLHAWLVAGEIPVSELAETPLLAYAFEALGSDELFDPAVDVICQIIHETQE 253          
BLAST of mRNA_H-canaliculatus_F_contig15111.3840.1 vs. uniprot
Match: A0A3G2S5F3_9BASI (Importin N-terminal domain-containing protein n=2 Tax=Malassezia restricta TaxID=76775 RepID=A0A3G2S5F3_9BASI)

HSP 1 Score: 54.3 bits (129), Expect = 6.240e-7
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   10 TVQETVFQCLQSWVRHVNVPGDELVRNPLLPAAFAALGNQELFETAVDVLVEVSRFSED 186
            T+Q  +F CL+SW++   V   +L   PLL   F AL ++ELF+TAVDVL ++   +++
Sbjct:  204 TIQAMIFACLRSWLKTGEVTAMQLAETPLLSCTFDALQDEELFDTAVDVLCDLINETQE 262          
BLAST of mRNA_H-canaliculatus_F_contig15111.3840.1 vs. uniprot
Match: A0A367KNW6_RHIST (Nuclear import receptor n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KNW6_RHIST)

HSP 1 Score: 53.5 bits (127), Expect = 1.160e-6
Identity = 24/62 (38.71%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 DRPTVQETVFQCLQSWVRHVNVPGDELVRNPLLPAAFAALGNQELFETAVDVLVEVSRFSED 186
            +   +QE +F CL SW+   ++    +V +PL   AF AL ++ELF+ AVD++VE+ R + D
Sbjct:    6 ENSALQEQIFSCLHSWIYTGSLDLRAVVGSPLYQLAFQALNSEELFDIAVDIVVEIIRETSD 67          
BLAST of mRNA_H-canaliculatus_F_contig15111.3840.1 vs. uniprot
Match: A0A166FIF7_9AGAM (ARM repeat-containing protein n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166FIF7_9AGAM)

HSP 1 Score: 53.5 bits (127), Expect = 1.170e-6
Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   13 VQETVFQCLQSWVRHVNVPGDELVRNPLLPAAFAALGNQELFETAVDVLVEVSRFSED 186
            VQ  VF CL+SW+    V   EL   PLL  AF ALG+ ELF+ AVDV+ ++   +++
Sbjct:  196 VQVQVFSCLRSWLIAGEVSASELSETPLLAYAFEALGSDELFDVAVDVICDLIHETQE 253          
BLAST of mRNA_H-canaliculatus_F_contig15111.3840.1 vs. uniprot
Match: A0A165W486_9AGAM (ARM repeat-containing protein n=2 Tax=Gloeophyllales TaxID=452339 RepID=A0A165W486_9AGAM)

HSP 1 Score: 52.8 bits (125), Expect = 2.180e-6
Identity = 22/58 (37.93%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   13 VQETVFQCLQSWVRHVNVPGDELVRNPLLPAAFAALGNQELFETAVDVLVEVSRFSED 186
            +Q  +F CL+SW+    +   +L   PLL  AF ALG++ELF+ AVDV+ ++   +++
Sbjct:  196 IQSQIFNCLRSWLVAGEISAQDLTTTPLLGYAFEALGSEELFDAAVDVICDLIHETQE 253          
BLAST of mRNA_H-canaliculatus_F_contig15111.3840.1 vs. uniprot
Match: A0A8H7S0N3_9FUNG (Importin N-terminal domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S0N3_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 4.090e-6
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   13 VQETVFQCLQSWVRHVNVPGDELVRNPLLPAAFAALGNQELFETAVDVLVEV 168
            +QE VF+CL SW+R  ++  + +V +PLL  AF AL N +LF+ AVD+ VE+
Sbjct:  199 LQERVFKCLISWLRAGDMDINIIVNSPLLNIAFEALDNDDLFDVAVDLGVEI 250          
BLAST of mRNA_H-canaliculatus_F_contig15111.3840.1 vs. uniprot
Match: A8PSV5_MALGO (Importin N-terminal domain-containing protein n=1 Tax=Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) TaxID=425265 RepID=A8PSV5_MALGO)

HSP 1 Score: 52.0 bits (123), Expect = 4.090e-6
Identity = 23/58 (39.66%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   13 VQETVFQCLQSWVRHVNVPGDELVRNPLLPAAFAALGNQELFETAVDVLVEVSRFSED 186
            +Q  +  CL+SW++   V   +L   PLL  AF AL N+ELF+TAVDV+ ++   +++
Sbjct:  213 IQAMILACLRSWLKAGEVSALQLAETPLLACAFDALQNEELFDTAVDVVCDLINETQE 270          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15111.3840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LR94_ECTSI9.860e-2490.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z666_9STRA4.860e-1359.26Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
M4BQJ6_HYAAE1.310e-743.55Xpo1 domain-containing protein n=1 Tax=Hyaloperono... [more]
A0A409V8A8_9AGAR4.560e-741.38Importin N-terminal domain-containing protein n=1 ... [more]
A0A3G2S5F3_9BASI6.240e-740.68Importin N-terminal domain-containing protein n=2 ... [more]
A0A367KNW6_RHIST1.160e-638.71Nuclear import receptor n=1 Tax=Rhizopus stolonife... [more]
A0A166FIF7_9AGAM1.170e-644.83ARM repeat-containing protein n=1 Tax=Fibularhizoc... [more]
A0A165W486_9AGAM2.180e-637.93ARM repeat-containing protein n=2 Tax=Gloeophyllal... [more]
A0A8H7S0N3_9FUNG4.090e-648.08Importin N-terminal domain-containing protein n=1 ... [more]
A8PSV5_MALGO4.090e-639.66Importin N-terminal domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15111contigH-canaliculatus_F_contig15111:2025..2219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.3e-19
Seed eggNOG ortholog2880.D8LR94
KEGG rclassRC00017
KEGG koko:K05288,ko:K15436
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG2081@1,KOG2081@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03016
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929254.4321337-CDS-H-canaliculatus_F_contig15111:2024..22191622929254.4321337-CDS-H-canaliculatus_F_contig15111:2024..2219Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15111 2025..2219 +
1696845737.9979122-CDS-H-canaliculatus_F_contig15111:2024..22191696845737.9979122-CDS-H-canaliculatus_F_contig15111:2024..2219Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15111 2025..2219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15111.3840.1prot_H-canaliculatus_F_contig15111.3840.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15111 2025..2219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15111.3840.1

>prot_H-canaliculatus_F_contig15111.3840.1 ID=prot_H-canaliculatus_F_contig15111.3840.1|Name=mRNA_H-canaliculatus_F_contig15111.3840.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=65bp
DRPTVQETVFQCLQSWVRHVNVPGDELVRNPLLPAAFAALGNQELFETAV
DVLVEVSRFSEDTI*
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mRNA from alignment at H-canaliculatus_F_contig15111:2025..2219+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15111.3840.1 ID=mRNA_H-canaliculatus_F_contig15111.3840.1|Name=mRNA_H-canaliculatus_F_contig15111.3840.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=195bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15111:2025..2219+ (Hapterophycus canaliculatus Oshoro5f female)
GACCGACCGACCGTGCAGGAGACAGTGTTCCAGTGCCTGCAGAGCTGGGT GCGACACGTCAACGTCCCGGGGGACGAGCTGGTGCGCAACCCCCTGCTGC CTGCCGCCTTCGCAGCGCTGGGAAACCAGGAGCTGTTTGAGACGGCGGTG GACGTGCTGGTGGAGGTGAGTCGGTTCAGCGAGGATACCATCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15111:2025..2219+

>mRNA_H-canaliculatus_F_contig15111.3840.1 ID=mRNA_H-canaliculatus_F_contig15111.3840.1|Name=mRNA_H-canaliculatus_F_contig15111.3840.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=390bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15111:2025..2219+ (Hapterophycus canaliculatus Oshoro5f female)
GACCGACCGACCGTGCAGGAGACAGTGTTCCAGTGCCTGCAGAGCTGGGT
GCGACACGTCAACGTCCCGGGGGACGAGCTGGTGCGCAACCCCCTGCTGC
CTGCCGCCTTCGCAGCGCTGGGAAACCAGGAGCTGTTTGAGACGGCGGTG
GACGTGCTGGTGGAGGTGAGTCGGTTCAGCGAGGATACCATCTGAGACCG
ACCGACCGTGCAGGAGACAGTGTTCCAGTGCCTGCAGAGCTGGGTGCGAC
ACGTCAACGTCCCGGGGGACGAGCTGGTGCGCAACCCCCTGCTGCCTGCC
GCCTTCGCAGCGCTGGGAAACCAGGAGCTGTTTGAGACGGCGGTGGACGT
GCTGGTGGAGGTGAGTCGGTTCAGCGAGGATACCATCTGA
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