mRNA_H-canaliculatus_F_contig15082.3824.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15082.3824.1
Unique NamemRNA_H-canaliculatus_F_contig15082.3824.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15082.3824.1 vs. uniprot
Match: A0A6H5KQ06_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ06_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.150e-20
Identity = 63/161 (39.13%), Postives = 89/161 (55.28%), Query Frame = 1 
Query:   13 GAFSRGRLAG---ETAATGGGNGVGANFGRIGVATTRGGEARKEIGAGDTTVTEGMTGEEIHRVLNRAGASRATKAALCEILMSEVAPHMVNPERSKADR-------KMTTKGERGTNGVVSYVMVPYSHAFMGDAKKQYSGGQLPNKDNNPYVAVASHVF 465
            GA   GRL G    TA +GG  G  A+      A   G  +    GA    V    T +E+HR++  A  +   KAALC +LM + AP M +  +  +D        +   KGER TNGV++ +MV YS+AF+GDAKK++S G+LP+  NNP+VAV + V+
Sbjct:   34 GAAGSGRLLGIGTNTARSGGLGGASASTAGAPAARAHGAASVGGSGARGIIVDRASTADELHRIIKPA--TPLVKAALCGMLMYKTAPSMYSAIKPDSDNGSGNNGSREKVKGERSTNGVINRIMVTYSYAFVGDAKKRFSEGKLPSARNNPFVAVGAMVY 192
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15082.3824.1 vs. uniprot
Match: A0A6H5KJF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF6_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 3.920e-19
Identity = 57/147 (38.78%), Postives = 82/147 (55.78%), Query Frame = 1 
Query:   46 TAATGGGNGVGANFGRIGVATTRGGEARKEIGAGDTTVTEGMTGEEIHRVLNRAGASRATKAALCEILMSEVAPHMVNPERSKADR-------KMTTKGERGTNGVVSYVMVPYSHAFMGDAKKQYSGGQLPNKDNNPYVAVASHVF 465
            TA +GG  G  A+      A   G  +    GA    V    T +E+HR++  A  +   KAALC +LM E A  M +  +  +D        +   KGER TNGV++ +MV YS+AF+GDAKK++S G+LP+  NNP+VAV + V+
Sbjct:  180 TARSGGLGGASASTAGAPAARAHGAASVGGSGARGIIVDRASTADELHRIIKPA--TPLVKAALCGMLMYETAHSMYSAIKPDSDNGSGNNGSREKVKGERSTNGVINRIMVTYSYAFVGDAKKRFSEGKLPSARNNPFVAVGAMVY 324
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15082.3824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQ06_9PHAE2.150e-2039.13Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJF6_9PHAE3.920e-1938.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15082contigH-canaliculatus_F_contig15082:44..1322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size468
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929250.3996167-CDS-H-canaliculatus_F_contig15082:44..2361622929250.3996167-CDS-H-canaliculatus_F_contig15082:44..236Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15082 45..236 -
1696845736.072815-CDS-H-canaliculatus_F_contig15082:44..2361696845736.072815-CDS-H-canaliculatus_F_contig15082:44..236Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15082 45..236 -
1622929250.4269063-CDS-H-canaliculatus_F_contig15082:1049..13221622929250.4269063-CDS-H-canaliculatus_F_contig15082:1049..1322Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15082 1050..1322 -
1696845736.08255-CDS-H-canaliculatus_F_contig15082:1049..13221696845736.08255-CDS-H-canaliculatus_F_contig15082:1049..1322Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15082 1050..1322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15082.3824.1prot_H-canaliculatus_F_contig15082.3824.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15082 45..1322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15082.3824.1

>prot_H-canaliculatus_F_contig15082.3824.1 ID=prot_H-canaliculatus_F_contig15082.3824.1|Name=mRNA_H-canaliculatus_F_contig15082.3824.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=155bp
DSDQGAFSRGRLAGETAATGGGNGVGANFGRIGVATTRGGEARKEIGAGD
TTVTEGMTGEEIHRVLNRAGASRATKAALCEILMSEVAPHMVNPERSKAD
RKMTTKGERGTNGVVSYVMVPYSHAFMGDAKKQYSGGQLPNKDNNPYVAV
ASHVF
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mRNA from alignment at H-canaliculatus_F_contig15082:44..1322-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15082.3824.1 ID=mRNA_H-canaliculatus_F_contig15082.3824.1|Name=mRNA_H-canaliculatus_F_contig15082.3824.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1279bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15082:44..1322- (Hapterophycus canaliculatus Oshoro5f female)
GACTCGGATCAGGGCGCCTTCTCCCGGGGACGGCTGGCTGGCGAGACTGC
CGCAACTGGTGGTGGTAATGGCGTGGGAGCAAACTTTGGCCGCATTGGGG
TGGCGACTACGCGAGGGGGGGAGGCCCGCAAGGAAATCGGTGCTGGCGAC
ACCACCGTCACCGAAGGCATGACCGGGGAGGAGATCCACCGGGTTCTCAA
CAGGGCAGGTGCTTCTCGTGCCACGAAGGCCGCCCTCTGTGAAATCCTCA
TGTCCGAGGTCGCACCCCATATGGTGAGAGGATCTTGATAGTGTGCTTCC
ACGTTTTTGTCCGCTGCCATGCTCCATCGGTACATGTGCAATCAGCATTT
TTACTAGACTCTGTTTCGCATTTGGGACTCGTGCGGAATGTTTTTGGGAA
GAAACCGAGTCGGTCATGTGCGTCTAACCCTACTCACGAGTAGCACAGGC
GTGTAAACGGCGGTGCTGCAACGACAGATTGGGGGGTGGATCGAGATCAA
TTTAATCCTTGTCGACGGATTGACGTGATTGTTCGGCTGGTTCTGTTTTT
ATCCCCCTGGTGCTCTACTGTTTGCTTTCCATGCCACCCATGCACGTTCG
TTACATTCATGCCAGACAGAGGCTGCGGCCACACACGATATCATCTTGTG
CCCTCGTGTGTTCTCGTTGCTGGGTCTTGATATTCCACCTCGCGCTCATC
ATTCCCTAGATTGATCGTTCAATGCCGGTCGTGAAGGTCCGTTTCCGGTA
TTTCTCCTGTCCTGGGCCAAAAGGGTTCACCTTGTCCCTTGAGCTGATCA
TGGAAACAACGGAAACCGCTACATAAACAGATGCAACTGCCGAAGTAAGT
TGTATATATCCTAGGTGGGTATCGGACATTGTCGGGTCAACAGCACTCTT
GTCGACGTAGCACCTTCCATTCCACAGCGGACGGCAAAATAGACACGAGA
GAAGAACGATGTCACGGACTCTATTTTTTTGGGGGAATCTGGGTAGGCAA
GATCATTTGCCCTGCGTGATATTCCCCAACCACCCACACGCTGAACCTCC
AGATCCCGTGATGCCCCCCAATGCCGCCCGATTTAGGTGAACCCCGAGCG
CAGCAAGGCGGATAGGAAGATGACCACCAAGGGCGAGCGTGGGACCAACG
GTGTCGTGTCTTACGTAATGGTGCCGTACAGCCATGCCTTCATGGGGGAC
GCGAAGAAGCAGTACTCCGGAGGGCAGCTTCCCAACAAGGACAACAACCC
CTACGTGGCCGTCGCCTCGCACGTTTTCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15082:44..1322-

>mRNA_H-canaliculatus_F_contig15082.3824.1 ID=mRNA_H-canaliculatus_F_contig15082.3824.1|Name=mRNA_H-canaliculatus_F_contig15082.3824.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=930bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15082:44..1322- (Hapterophycus canaliculatus Oshoro5f female)
GACTCGGATCAGGGCGCCTTCTCCCGGGGACGGCTGGCTGGCGAGACTGC
CGCAACTGGTGGTGGTAATGGCGTGGGAGCAAACTTTGGCCGCATTGGGG
TGGCGACTACGCGAGGGGGGGAGGCCCGCAAGGAAATCGGTGCTGGCGAC
ACCACCGTCACCGAAGGCATGACCGGGGAGGAGATCCACCGGGTTCTCAA
CAGGGCAGGTGCTTCTCGTGCCACGAAGGCCGCCCTCTGTGAAATCCTCA
TGTCCGAGGTCGCACCCCATATGGACTCGGATCAGGGCGCCTTCTCCCGG
GGACGGCTGGCTGGCGAGACTGCCGCAACTGGTGGTGGTAATGGCGTGGG
AGCAAACTTTGGCCGCATTGGGGTGGCGACTACGCGAGGGGGGGAGGCCC
GCAAGGAAATCGGTGCTGGCGACACCACCGTCACCGAAGGCATGACCGGG
GAGGAGATCCACCGGGTTCTCAACAGGGCAGGTGCTTCTCGTGCCACGAA
GGCCGCCCTCTGTGAAATCCTCATGTCCGAGGTCGCACCCCATATGGTGA
ACCCCGAGCGCAGCAAGGCGGATAGGAAGATGACCACCAAGGGCGAGCGT
GGGACCAACGGTGTCGTGTCTTACGTAATGGTGCCGTACAGCCATGCCTT
CATGGGGGACGCGAAGAAGCAGTACTCCGGAGGGCAGCTTCCCAACAAGG
ACAACAACCCCTACGTGGCCGTCGCCTCGCACGTTTTCGTGAACCCCGAG
CGCAGCAAGGCGGATAGGAAGATGACCACCAAGGGCGAGCGTGGGACCAA
CGGTGTCGTGTCTTACGTAATGGTGCCGTACAGCCATGCCTTCATGGGGG
ACGCGAAGAAGCAGTACTCCGGAGGGCAGCTTCCCAACAAGGACAACAAC
CCCTACGTGGCCGTCGCCTCGCACGTTTTC
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