mRNA_H-canaliculatus_F_contig1506.3806.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1506.3806.1
Unique NamemRNA_H-canaliculatus_F_contig1506.3806.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1506.3806.1 vs. uniprot
Match: D7FZK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZK8_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.470e-5
Identity = 34/60 (56.67%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:    1 GKRPATNHAGGKGERRVASLFDLLQELSVPPKSNTTAISSSHGVQGAGAP--VTSTPFAT 174
            G RPA        E+RVASLFDLLQELSVPPKS      SS G Q AGAP   T++P A+
Sbjct:   44 GIRPAPGRPSAHSEQRVASLFDLLQELSVPPKSG----GSSLGAQAAGAPRGTTASPLAS 99
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BLAST of mRNA_H-canaliculatus_F_contig1506.3806.1 vs. uniprot
Match: A0A6H5KZ06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ06_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 6.840e-5
Identity = 34/66 (51.52%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:    1 GKRPATNHAGGKGERRVASLFDLLQELSVPPKSNTTAISSSHGVQGAGAPVTSTPFATACSAHASR 198
            G RPA        E+RV SLFDLLQELSVPPKS      SSHG + AGAP  +T  + A S   +R
Sbjct:   33 GIRPAPGRPIAHSEQRVTSLFDLLQELSVPPKSG----GSSHGARPAGAPRGTTASSLASSLSTNR 94
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1506.3806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZK8_ECTSI1.470e-556.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZ06_9PHAE6.840e-551.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1506contigH-canaliculatus_F_contig1506:7586..8448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size448
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929248.0716953-CDS-H-canaliculatus_F_contig1506:7586..79291622929248.0716953-CDS-H-canaliculatus_F_contig1506:7586..7929Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1506 7587..7929 -
1696845735.01189-CDS-H-canaliculatus_F_contig1506:7586..79291696845735.01189-CDS-H-canaliculatus_F_contig1506:7586..7929Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1506 7587..7929 -
1622929248.1028821-CDS-H-canaliculatus_F_contig1506:8344..84481622929248.1028821-CDS-H-canaliculatus_F_contig1506:8344..8448Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1506 8345..8448 -
1696845735.0225208-CDS-H-canaliculatus_F_contig1506:8344..84481696845735.0225208-CDS-H-canaliculatus_F_contig1506:8344..8448Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1506 8345..8448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1506.3806.1prot_H-canaliculatus_F_contig1506.3806.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1506 7587..8448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1506.3806.1

>prot_H-canaliculatus_F_contig1506.3806.1 ID=prot_H-canaliculatus_F_contig1506.3806.1|Name=mRNA_H-canaliculatus_F_contig1506.3806.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=149bp
GKRPATNHAGGKGERRVASLFDLLQELSVPPKSNTTAISSSHGVQGAGAP
VTSTPFATACSAHASRSSRSILPSGKRQQQSAALMAGAEPGEGSWRVASV
GGSRAVESSSNSLEPNAAANSGRGKTAAAALSANQPRGSKDTPEERSKR
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mRNA from alignment at H-canaliculatus_F_contig1506:7586..8448-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1506.3806.1 ID=mRNA_H-canaliculatus_F_contig1506.3806.1|Name=mRNA_H-canaliculatus_F_contig1506.3806.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=863bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1506:7586..8448- (Hapterophycus canaliculatus Oshoro5f female)
GGGAAACGGCCGGCAACCAATCACGCGGGCGGGAAGGGCGAACGAAGGGT
CGCTTCGCTCTTCGACCTACTGCAAGAGCTGTCGGTGCCGCCCAAGTCCA
ACACGTGAGCAGTTTGTACTCACGAGCTACCTAGCGGCGGCGCTTGGAGA
GGATAGTGTACCAGCGAAGGTCGAGATAGTAGCGACCGTGCCCAAGAGCC
GCCGACAAGCTGCATCCTGGACCCGCAAGTCCTTGAGCCAAAACTCGGGG
GAGCCGAACCGTTTTTTGGTATCGATGTCATGACGATTTCAAGTACGGGT
GTTGGATCCAGCGTACAGGGTGCAACGTTCTGCAGCTTCCGGAACAAGGA
CGCCAAGACGCGCTCCGGCTTCCCACAAACCGCCGATGCGCTGCTGCTCT
CGCCCCTCCTTTCTTATTTCCTTTCCGAACGCGCACGCGCCTTTAGCTCA
CCCGCCAGCTTGCCCTTCACTCACCCGTCCGCTTCGTTGCCTCACTTCTG
TTGCTATTCTGACAAAAAGGACGGCGATCAGCTCCTCGCACGGGGTTCAA
GGCGCTGGCGCACCGGTCACATCTACACCATTTGCCACCGCGTGTTCTGC
TCACGCCTCTAGGAGTAGCCGCTCAATCCTCCCCAGTGGAAAACGACAGC
AACAGTCCGCGGCCTTGATGGCCGGAGCAGAGCCCGGGGAAGGAAGCTGG
CGGGTCGCCAGCGTAGGGGGTAGTCGCGCCGTCGAAAGCAGTAGCAACTC
GCTGGAACCAAACGCCGCGGCCAATTCTGGACGAGGCAAGACGGCGGCGG
CGGCGCTATCAGCGAACCAGCCGAGGGGATCGAAAGACACGCCCGAAGAG
CGCTCCAAGAGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1506:7586..8448-

>mRNA_H-canaliculatus_F_contig1506.3806.1 ID=mRNA_H-canaliculatus_F_contig1506.3806.1|Name=mRNA_H-canaliculatus_F_contig1506.3806.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=894bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1506:7586..8448- (Hapterophycus canaliculatus Oshoro5f female)
GGGAAACGGCCGGCAACCAATCACGCGGGCGGGAAGGGCGAACGAAGGGT
CGCTTCGCTCTTCGACCTACTGCAAGAGCTGTCGGTGCCGCCCAAGTCCA
ACACGGGAAACGGCCGGCAACCAATCACGCGGGCGGGAAGGGCGAACGAA
GGGTCGCTTCGCTCTTCGACCTACTGCAAGAGCTGTCGGTGCCGCCCAAG
TCCAACACGACGGCGATCAGCTCCTCGCACGGGGTTCAAGGCGCTGGCGC
ACCGGTCACATCTACACCATTTGCCACCGCGTGTTCTGCTCACGCCTCTA
GGAGTAGCCGCTCAATCCTCCCCAGTGGAAAACGACAGCAACAGTCCGCG
GCCTTGATGGCCGGAGCAGAGCCCGGGGAAGGAAGCTGGCGGGTCGCCAG
CGTAGGGGGTAGTCGCGCCGTCGAAAGCAGTAGCAACTCGCTGGAACCAA
ACGCCGCGGCCAATTCTGGACGAGGCAAGACGGCGGCGGCGGCGCTATCA
GCGAACCAGCCGAGGGGATCGAAAGACACGCCCGAAGAGCGCTCCAAGAG
GGACGGCGATCAGCTCCTCGCACGGGGTTCAAGGCGCTGGCGCACCGGTC
ACATCTACACCATTTGCCACCGCGTGTTCTGCTCACGCCTCTAGGAGTAG
CCGCTCAATCCTCCCCAGTGGAAAACGACAGCAACAGTCCGCGGCCTTGA
TGGCCGGAGCAGAGCCCGGGGAAGGAAGCTGGCGGGTCGCCAGCGTAGGG
GGTAGTCGCGCCGTCGAAAGCAGTAGCAACTCGCTGGAACCAAACGCCGC
GGCCAATTCTGGACGAGGCAAGACGGCGGCGGCGGCGCTATCAGCGAACC
AGCCGAGGGGATCGAAAGACACGCCCGAAGAGCGCTCCAAGAGG
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