mRNA_H-canaliculatus_F_contig14976.3736.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14976.3736.1
Unique NamemRNA_H-canaliculatus_F_contig14976.3736.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14976.3736.1 vs. uniprot
Match: D7FI56_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI56_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 1.900e-94
Identity = 168/281 (59.79%), Postives = 195/281 (69.40%), Query Frame = 1 
Query:    1 MSSLAESSSDDGNMSD--YDFVDVEGA---SSDDD-TVTSSLAPPKGWSTLSLSDADGGETGAYFLASAAAAATAARGRREFISSPGSAAATCASFSPSVIKKSSTRFEPAPASAGAFSCRACDRLLRDCVECPTCHSLFCREHLVINKQNGKSPCPCEPCRPSSTDTVVAPFFTTSAQAPSAPRLHPHEAFLSNIPVQRMADAVPSKCDGCGISLSWGELALHACDQQLVPCRHKDFGCRWFGQRHEADSHAESSTCPGRLARAQRANDDLRAELAASRA 825
            MS + ESSSDDG MSD  +DFV+VEG    SSD D TVTSSLAPPKGWSTLSLSDA+  +TG   +              EFIS+P +AA+ C + +   + KSSTRFEP+  S  AFSCRAC  LLRDCVECPTCHSLFCREHLV++KQNG SPCPCEPC  +   T ++   T           HP EAFL NIP+QR+ADAVPS+CDGCGISLSWGEL  HACDQQLVPC  +  GC WFG+RHE ++H  SSTCPGRLA AQ    + R+E A  RA
Sbjct:    1 MSGMLESSSDDGCMSDHSFDFVEVEGGTSYSSDGDATVTSSLAPPKGWSTLSLSDAEAVKTGPAAVTXXXXXXXXXXXXXEFISTPIAAASFCQTAA--AVTKSSTRFEPS--SLAAFSCRACGNLLRDCVECPTCHSLFCREHLVVDKQNGTSPCPCEPCSLAPIATTLSAASTXXXXXXXRAHHHPREAFLPNIPLQRIADAVPSRCDGCGISLSWGELGRHACDQQLVPCGRRQHGCSWFGKRHEREAHEASSTCPGRLALAQAEALEARSEAARLRA 277
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14976.3736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI56_ECTSI1.900e-9459.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14976contigH-canaliculatus_F_contig14976:1..912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_003620.1
Exons2
Model size873
Cds size873
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929238.1154833-CDS-H-canaliculatus_F_contig14976:0..3931622929238.1154833-CDS-H-canaliculatus_F_contig14976:0..393Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14976 1..393 -
1696845730.3648522-CDS-H-canaliculatus_F_contig14976:0..3931696845730.3648522-CDS-H-canaliculatus_F_contig14976:0..393Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14976 1..393 -
1622929238.1272082-CDS-H-canaliculatus_F_contig14976:432..9121622929238.1272082-CDS-H-canaliculatus_F_contig14976:432..912Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14976 433..912 -
1696845730.3738694-CDS-H-canaliculatus_F_contig14976:432..9121696845730.3738694-CDS-H-canaliculatus_F_contig14976:432..912Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14976 433..912 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14976.3736.1prot_H-canaliculatus_F_contig14976.3736.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14976 1..912 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14976.3736.1

>prot_H-canaliculatus_F_contig14976.3736.1 ID=prot_H-canaliculatus_F_contig14976.3736.1|Name=mRNA_H-canaliculatus_F_contig14976.3736.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=291bp
MSSLAESSSDDGNMSDYDFVDVEGASSDDDTVTSSLAPPKGWSTLSLSDA
DGGETGAYFLASAAAAATAARGRREFISSPGSAAATCASFSPSVIKKSST
RFEPAPASAGAFSCRACDRLLRDCVECPTCHSLFCREHLVINKQNGKSPC
PCEPCRPSSTDTVVAPFFTTSAQAPSAPRLHPHEAFLSNIPVQRMADAVP
SKCDGCGISLSWGELALHACDQQLVPCRHKDFGCRWFGQRHEADSHAESS
TCPGRLARAQRANDDLRAELAASRAEAEALEHRACSAEERA
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mRNA from alignment at H-canaliculatus_F_contig14976:1..912-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14976.3736.1 ID=mRNA_H-canaliculatus_F_contig14976.3736.1|Name=mRNA_H-canaliculatus_F_contig14976.3736.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=912bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14976:1..912- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCAGTCTAGCTGAGAGCTCGAGCGACGATGGCAATATGTCAGACTA
CGACTTCGTTGATGTTGAAGGAGCAAGCAGTGACGACGATACAGTCACCA
GCAGCCTCGCGCCTCCAAAGGGCTGGAGCACGCTCAGCCTGTCAGATGCC
GACGGTGGCGAGACAGGGGCATATTTTTTGGCGAGTGCAGCTGCGGCTGC
GACTGCTGCTCGTGGTCGACGCGAGTTTATTTCCTCTCCTGGGAGCGCTG
CTGCGACCTGTGCATCTTTTTCTCCATCCGTAATCAAGAAAAGTTCAACA
AGATTTGAACCTGCGCCGGCCTCGGCCGGGGCCTTCAGCTGCCGCGCCTG
CGACCGCCTGCTCCGGGACTGTGTCGAGTGCCCCACGTGCCACAGCCTCT
TCTGCCGGGAGCATCTCGTTATCAACAAGCAAAACGGTAAGAGCCCCTGC
CCGTGCGAGCCCTGCCGCCCTTCTTCTACCGTATCTGATAGGGAGGAGAC
CATAACTTCCAACAACAAGGACACAGTGGTCGCACCCTTTTTCACGACCT
CAGCTCAAGCTCCTTCCGCTCCGCGGCTCCACCCTCACGAGGCCTTCCTG
TCCAACATTCCGGTCCAGCGGATGGCGGACGCCGTCCCCTCCAAGTGCGA
CGGCTGCGGGATCTCGCTCTCCTGGGGTGAGCTGGCCCTCCACGCCTGTG
ACCAGCAGCTCGTGCCCTGCAGGCACAAGGATTTCGGCTGCCGCTGGTTC
GGCCAACGTCACGAGGCCGACTCTCATGCCGAATCTTCAACTTGCCCGGG
CCGCCTCGCCCGGGCGCAGCGAGCCAACGATGACCTCCGAGCCGAGCTGG
CGGCGTCGCGCGCGGAAGCGGAGGCCTTGGAGCACCGCGCGTGCTCCGCA
GAGGAGCGCGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14976:1..912-

>mRNA_H-canaliculatus_F_contig14976.3736.1 ID=mRNA_H-canaliculatus_F_contig14976.3736.1|Name=mRNA_H-canaliculatus_F_contig14976.3736.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1746bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14976:1..912- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCAGTCTAGCTGAGAGCTCGAGCGACGATGGCAATATGTCAGACTA
CGACTTCGTTGATGTTGAAGGAGCAAGCAGTGACGACGATACAGTCACCA
GCAGCCTCGCGCCTCCAAAGGGCTGGAGCACGCTCAGCCTGTCAGATGCC
GACGGTGGCGAGACAGGGGCATATTTTTTGGCGAGTGCAGCTGCGGCTGC
GACTGCTGCTCGTGGTCGACGCGAGTTTATTTCCTCTCCTGGGAGCGCTG
CTGCGACCTGTGCATCTTTTTCTCCATCCGTAATCAAGAAAAGTTCAACA
AGATTTGAACCTGCGCCGGCCTCGGCCGGGGCCTTCAGCTGCCGCGCCTG
CGACCGCCTGCTCCGGGACTGTGTCGAGTGCCCCACGTGCCACAGCCTCT
TCTGCCGGGAGCATCTCGTTATCAACAAGCAAAACGGTAAGAGCCCCTGC
CCGTGCGAGCCCTGCCGCCCTTCTTCTACCATGAGCAGTCTAGCTGAGAG
CTCGAGCGACGATGGCAATATGTCAGACTACGACTTCGTTGATGTTGAAG
GAGCAAGCAGTGACGACGATACAGTCACCAGCAGCCTCGCGCCTCCAAAG
GGCTGGAGCACGCTCAGCCTGTCAGATGCCGACGGTGGCGAGACAGGGGC
ATATTTTTTGGCGAGTGCAGCTGCGGCTGCGACTGCTGCTCGTGGTCGAC
GCGAGTTTATTTCCTCTCCTGGGAGCGCTGCTGCGACCTGTGCATCTTTT
TCTCCATCCGTAATCAAGAAAAGTTCAACAAGATTTGAACCTGCGCCGGC
CTCGGCCGGGGCCTTCAGCTGCCGCGCCTGCGACCGCCTGCTCCGGGACT
GTGTCGAGTGCCCCACGTGCCACAGCCTCTTCTGCCGGGAGCATCTCGTT
ATCAACAAGCAAAACGGTAAGAGCCCCTGCCCGTGCGAGCCCTGCCGCCC
TTCTTCTACCGACACAGTGGTCGCACCCTTTTTCACGACCTCAGCTCAAG
CTCCTTCCGCTCCGCGGCTCCACCCTCACGAGGCCTTCCTGTCCAACATT
CCGGTCCAGCGGATGGCGGACGCCGTCCCCTCCAAGTGCGACGGCTGCGG
GATCTCGCTCTCCTGGGGTGAGCTGGCCCTCCACGCCTGTGACCAGCAGC
TCGTGCCCTGCAGGCACAAGGATTTCGGCTGCCGCTGGTTCGGCCAACGT
CACGAGGCCGACTCTCATGCCGAATCTTCAACTTGCCCGGGCCGCCTCGC
CCGGGCGCAGCGAGCCAACGATGACCTCCGAGCCGAGCTGGCGGCGTCGC
GCGCGGAAGCGGAGGCCTTGGAGCACCGCGCGTGCTCCGCAGAGGAGCGC
GCTGACACAGTGGTCGCACCCTTTTTCACGACCTCAGCTCAAGCTCCTTC
CGCTCCGCGGCTCCACCCTCACGAGGCCTTCCTGTCCAACATTCCGGTCC
AGCGGATGGCGGACGCCGTCCCCTCCAAGTGCGACGGCTGCGGGATCTCG
CTCTCCTGGGGTGAGCTGGCCCTCCACGCCTGTGACCAGCAGCTCGTGCC
CTGCAGGCACAAGGATTTCGGCTGCCGCTGGTTCGGCCAACGTCACGAGG
CCGACTCTCATGCCGAATCTTCAACTTGCCCGGGCCGCCTCGCCCGGGCG
CAGCGAGCCAACGATGACCTCCGAGCCGAGCTGGCGGCGTCGCGCGCGGA
AGCGGAGGCCTTGGAGCACCGCGCGTGCTCCGCAGAGGAGCGCGCT
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