mRNA_H-canaliculatus_F_contig14945.3724.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig14945.3724.1 vs. uniprot
Match: D8LPY7_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY7_ECTSI) HSP 1 Score: 136 bits (342), Expect = 1.150e-34 Identity = 104/182 (57.14%), Postives = 111/182 (60.99%), Query Frame = 1
Query: 4 TLSFVSGQVKKTAFAQGVRCASLGSRRTLCGNGRVSSLKTDGKMRDACLELQKNKKKXXXXXXXXXXXXAXREA------------------------------GERKGKG---------------------------GAREFPYRALASVRDIEELAELGKQEGTCAYYGARKAAKLAQVL 378
T FV+ +VKKTAFA+GVRCASLGSRRTLCGN RVSSLKTDGKMRDACLELQKNKK XXXXXXXXXXXX X G RK +G G REFPYRALASVRDIEELA LGK+EGTCAYYGARKAA LAQ++
Sbjct: 264 TSQFVN-EVKKTAFAKGVRCASLGSRRTLCGNERVSSLKTDGKMRDACLELQKNKKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLGTRKSEGEXXXXXXXXXXXXXXGTTDGCPLLAADGQREFPYRALASVRDIEELAALGKEEGTCAYYGARKAASLAQLV 444
BLAST of mRNA_H-canaliculatus_F_contig14945.3724.1 vs. uniprot
Match: A0A6H5KJU5_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU5_9PHAE) HSP 1 Score: 130 bits (328), Expect = 6.670e-33 Identity = 98/181 (54.14%), Postives = 104/181 (57.46%), Query Frame = 1
Query: 4 TLSFVSGQVKKTAFAQGVRCASLGSRRTLCGNGRVSSLKTDGKMRDACLELQKNKKKXXXXXXXXXXXX----------------------AXREA-----------------------------GERKG-----KGGAREFPYRALASVRDIEELAELGKQEGTCAYYGARKAAKLAQVL 378
T FV+ +VKKTAFA+GVRCASLGSRRTLCGN RVSSLKTDGKMRDACLELQKNKK XXXXXXX A R G G G REFPYRALASVRDIEELA LGK+EGTCAYYGARKAA LAQ++
Sbjct: 264 TSQFVN-EVKKTAFAKGVRCASLGSRRTLCGNERVSSLKTDGKMRDACLELQKNKKSSSKKTXXXXXXXXXXXXXXXXXXXXXXXTEPLTEAKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGTTDGCPLLAADGQREFPYRALASVRDIEELAALGKEEGTCAYYGARKAASLAQLV 443
BLAST of mRNA_H-canaliculatus_F_contig14945.3724.1 vs. uniprot
Match: A0A835YWY4_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY4_9STRA) HSP 1 Score: 105 bits (262), Expect = 6.950e-24 Identity = 72/140 (51.43%), Postives = 82/140 (58.57%), Query Frame = 1
Query: 4 TLSFVSGQVKKTAFAQGVRCASLGSRRTLCGNGRVSSLKTDGKMRDACLELQKNKKKXXXXXXXXXXXXAXRE------AGERKG-KGGA--------REFPYRALASVRDIEELAELGKQEGTCAYYGARKAAKLAQVL 378
T FV+ +VKKTAFA GVRC +LG RR LC N VSSL +D +M DACL+LQK KKK A R G RKG K G REF ALA+VRDIEEL ELG+ C YYG RKAA LAQ++
Sbjct: 245 TSQFVN-EVKKTAFAAGVRCVTLGGRRNLCINPAVSSLSSDARMTDACLDLQKGKKKASCGSSCAQPPPAKRAKQGVAAGGGRKGEKRGCEWLSVATQREFRDHALAAVRDIEELGELGRGLHACPYYGTRKAAALAQLV 383
BLAST of mRNA_H-canaliculatus_F_contig14945.3724.1 vs. uniprot
Match: A0A5D6Y0V7_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0V7_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 7.430e-15 Identity = 51/128 (39.84%), Postives = 71/128 (55.47%), Query Frame = 1
Query: 25 QVKKTAFAQGVRCASLGSRRTLCGNGRVSSLKTDGKMRDACLELQKNKKKXXXXXXXXXXXXAXREAGERKGKGGAR----------EFPYRALASVRDIEELAELGKQEGTCAYYGARKAAKLAQVL 378
++++TAF VR SLGSR+ LC N RV++L++D +M DACL++ +N A A K K A+ F ALA+VRDIE+L +LG TCAYYG R++ LAQV+
Sbjct: 247 EIRRTAFGARVRVVSLGSRKNLCTNPRVTALRSDAQMTDACLDMLQNSSSSK----------AKAVASRSKKKRDAKCPFYDKERLGHFRDHALAAVRDIEDLHDLGSDLTTCAYYGTRESVPLAQVV 364
BLAST of mRNA_H-canaliculatus_F_contig14945.3724.1 vs. uniprot
Match: A0A1Y2AQU1_9FUNG (ATP-dependent DNA helicase CHL1 n=2 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2AQU1_9FUNG) HSP 1 Score: 78.6 bits (192), Expect = 1.870e-14 Identity = 50/126 (39.68%), Postives = 68/126 (53.97%), Query Frame = 1
Query: 1 STLSFVSGQVKKTAFAQGVRCASLGSRRTLCGNGRVSSLKTDGKMRDACLELQKNKKKXXXXXXXXXXXXAXREAGERKGKGGAREFPYRALASVRDIEELAELGKQEGTCAYYGARKAAKLAQVL 378
S LS ++KKT + + V+ SLGSR+ LC N +V+ L + +M D CL+LQK+K K K R+F A+VRDIEELAELGK +G C YYG R A +Q++
Sbjct: 203 SQLSQFISELKKTEYVETVKSLSLGSRKNLCINDQVTRLSSAPRMNDKCLDLQKDKANKCPYLP--------------KEKRPLRDFSDTINATVRDIEELAELGKAKGVCPYYGTRAALPSSQIV 314
BLAST of mRNA_H-canaliculatus_F_contig14945.3724.1 vs. uniprot
Match: A0A015KHZ2_RHIIW (ATP-dependent DNA helicase CHL1 n=11 Tax=Rhizophagus TaxID=1129544 RepID=A0A015KHZ2_RHIIW) HSP 1 Score: 75.5 bits (184), Expect = 2.250e-13 Identity = 43/126 (34.13%), Postives = 67/126 (53.17%), Query Frame = 1
Query: 1 STLSFVSGQVKKTAFAQGVRCASLGSRRTLCGNGRVSSLKTDGKMRDACLELQKNKKKXXXXXXXXXXXXAXREAGERKGKGGAREFPYRALASVRDIEELAELGKQEGTCAYYGARKAAKLAQVL 378
S L+ +++KT +A+ V+C SLGSR+ LC N V LK ++ + CL++QK KK R ++ LASVRDIEEL ++G++ C+YYG RK+ + Q++
Sbjct: 226 SQLTQFVNELRKTVYAEDVKCVSLGSRKNLCINEEVRKLKNINRINERCLDMQKAGKKPEKRCPYIPIRDKSRML----------DYRDHVLASVRDIEELVDIGRKLNACSYYGTRKSIRQCQIV 341
BLAST of mRNA_H-canaliculatus_F_contig14945.3724.1 vs. uniprot
Match: A0A2P4YD26_9STRA (ATP-dependent RNA helicase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YD26_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 4.090e-13 Identity = 44/118 (37.29%), Postives = 67/118 (56.78%), Query Frame = 1
Query: 25 QVKKTAFAQGVRCASLGSRRTLCGNGRVSSLKTDGKMRDACLELQKNKKKXXXXXXXXXXXXAXREAGERKGKGGAREFPYRALASVRDIEELAELGKQEGTCAYYGARKAAKLAQVL 378
+++KTAFA+ +R SLGSR+ LC N +V+ L +D +M D CL++ ++ K G K Y ALA V+DIE+L LG++ TC+YYG R++ LAQ++
Sbjct: 218 EIRKTAFAKHIRVVSLGSRKNLCTNPKVTKLNSDLRMADKCLDMMQSSKAKNAKKVGKCPFYEKELLGHYK--------DY-ALAHVQDIEDLHTLGEEMSTCSYYGTRESIPLAQIV 326
BLAST of mRNA_H-canaliculatus_F_contig14945.3724.1 vs. uniprot
Match: K3W6Y0_GLOUD (Helicase ATP-binding domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6Y0_GLOUD) HSP 1 Score: 73.9 bits (180), Expect = 7.810e-13 Identity = 44/118 (37.29%), Postives = 67/118 (56.78%), Query Frame = 1
Query: 25 QVKKTAFAQGVRCASLGSRRTLCGNGRVSSLKTDGKMRDACLELQKNKKKXXXXXXXXXXXXAXREAGERKGKGGAREFPYRALASVRDIEELAELGKQEGTCAYYGARKAAKLAQVL 378
+++KT F +R SLGSR+ LC N V+SL++D +M D CL++ + KK +++ G +++ ALA V DIEEL ELG + C+YYG R++ LAQV+
Sbjct: 265 EIRKTVFGDHIRVVSLGSRKNLCTNPSVASLRSDLQMTDKCLDMLQGAKKQTKAAKQKKKATGKCPFYDKELLGYYKDY---ALAHVHDIEELHELGDEMSICSYYGTRESVPLAQVI 379
BLAST of mRNA_H-canaliculatus_F_contig14945.3724.1 vs. uniprot
Match: A0A484DR37_BRELC (Helicase ATP-binding domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DR37_BRELC) HSP 1 Score: 73.6 bits (179), Expect = 1.060e-12 Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 1
Query: 25 QVKKTAFAQGVRCASLGSRRTLCGNGRVSSLKTDGKMRDACLELQKNKKKXXXXXXXXXXXXAXREAGERKGKGGAREFPYRALASVRDIEELAELGKQEGTCAYYGARKAAKLAQVL 378
+++KT FA +R SLGSR+ LC N +VS L++D +M D CL++ ++ K G+ + ALA V+DIE+L LG+ C+YYG R++ LAQ++
Sbjct: 235 EIRKTKFANHIRVVSLGSRKNLCTNPKVSKLESDVRMTDKCLDMMQSSKTKDGKKVCKCPFYEKELLGQ---------YKNHALAHVQDIEDLHTLGEHMSVCSYYGTRESIPLAQIV 343
BLAST of mRNA_H-canaliculatus_F_contig14945.3724.1 vs. uniprot
Match: A0A225WVM1_9STRA (DNA helicase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WVM1_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 1.060e-12 Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = 1
Query: 25 QVKKTAFAQGVRCASLGSRRTLCGNGRVSSLKTDGKMRDACLELQKNKKKXXXXXXXXXXXXAXREAGERKGKGGARE------FPYRALASVRDIEELAELGKQEGTCAYYGARKAAKLAQVL 378
+++KTAFA+ VR SLGSR+ LC N +V+ L +D +M D CL++ ++ K + G ++GK E + AL V+DIE+L LG++ TC+YYG R++ LAQ++
Sbjct: 218 EIRKTAFAEHVRVVSLGSRKNLCTNPKVTKLNSDLRMTDKCLDMMQSSKT---------------KNGRKQGKCPFYEKELLGLYKDYALVHVQDIEDLHTLGEEMSTCSYYGTRESIPLAQIV 326 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14945.3724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig14945.3724.1 >prot_H-canaliculatus_F_contig14945.3724.1 ID=prot_H-canaliculatus_F_contig14945.3724.1|Name=mRNA_H-canaliculatus_F_contig14945.3724.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=126bp STLSFVSGQVKKTAFAQGVRCASLGSRRTLCGNGRVSSLKTDGKMRDACLback to top mRNA from alignment at H-canaliculatus_F_contig14945:1377..2218+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig14945.3724.1 ID=mRNA_H-canaliculatus_F_contig14945.3724.1|Name=mRNA_H-canaliculatus_F_contig14945.3724.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=842bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14945:1377..2218+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14945:1377..2218+ >mRNA_H-canaliculatus_F_contig14945.3724.1 ID=mRNA_H-canaliculatus_F_contig14945.3724.1|Name=mRNA_H-canaliculatus_F_contig14945.3724.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=756bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14945:1377..2218+ (Hapterophycus canaliculatus Oshoro5f female)back to top |