mRNA_H-canaliculatus_F_contig14904.3704.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: D7FVL8_ECTSI (Cnd3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL8_ECTSI) HSP 1 Score: 141 bits (356), Expect = 4.140e-37 Identity = 68/79 (86.08%), Postives = 76/79 (96.20%), Query Frame = 1
Query: 46 QLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI 282
QLVLRTQDVKESVRRAAFRTLGEDVSSK L PQQRVTL+KRG +DSSEAVV+ACRFM+CVHWFRDA+YDP+ELLQRL++
Sbjct: 224 QLVLRTQDVKESVRRAAFRTLGEDVSSKLLSPQQRVTLVKRGLSDSSEAVVDACRFMVCVHWFRDAEYDPMELLQRLNV 302
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: A0A6H5L8W1_9PHAE (Cnd3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8W1_9PHAE) HSP 1 Score: 105 bits (263), Expect = 1.470e-24 Identity = 50/74 (67.57%), Postives = 63/74 (85.14%), Query Frame = 1
Query: 67 DVKESVRRAAFRTLG--EDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI 282
DV+++ A +T+G + VSSK L PQQRVTL+KRG +DSSEAVV+ACRFM+CVHWFRDA+YDP+ELLQRLD+
Sbjct: 122 DVRQAALAAVTKTVGMFDQVSSKLLSPQQRVTLVKRGLSDSSEAVVDACRFMVCVHWFRDAEYDPMELLQRLDV 195
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: UPI001E1DD553 (condensin complex subunit 3 n=1 Tax=Echinops telfairi TaxID=9371 RepID=UPI001E1DD553) HSP 1 Score: 64.7 bits (156), Expect = 4.300e-10 Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 1
Query: 34 KSPAQLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI 282
K+ Q+V RT+DVKE+VR+ A++ L E V K + QRV LL+ G D S AV +A + L WFR ++ D + LL RLD+
Sbjct: 175 KTLPQIVGRTRDVKEAVRKLAYQVLAEKVHMKAMSIAQRVMLLQHGLNDRSAAVKQATQKHLLQGWFRFSEGDILMLLHRLDV 257
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: A0A6P7X943_9AMPH (LOW QUALITY PROTEIN: condensin complex subunit 3 n=1 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7X943_9AMPH) HSP 1 Score: 64.3 bits (155), Expect = 5.870e-10 Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 1
Query: 34 KSPAQLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI 282
K+ Q+V RT D+K+ VR+ A++ L E + + L QRV LL++G D S+AV E + L W R D D +ELL RLD+
Sbjct: 211 KTLPQIVGRTMDIKDVVRKLAYQVLSEKIHMRALSIAQRVQLLQQGLNDRSDAVKEVMQKKLLQAWLRFCDGDVLELLHRLDV 293
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: A0A384BP39_URSMA (Non-SMC condensin I complex subunit G n=33 Tax=Carnivora TaxID=33554 RepID=A0A384BP39_URSMA) HSP 1 Score: 63.2 bits (152), Expect = 1.500e-9 Identity = 35/83 (42.17%), Postives = 53/83 (63.86%), Query Frame = 1
Query: 34 KSPAQLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI 282
K+ Q+V RT+DVKE+VR+ A++ L E V + + QRV LL++G D S+AV +A + L W R + + +ELL RLD+
Sbjct: 208 KTLPQIVGRTKDVKEAVRKLAYQVLAEKVHMRAMSIAQRVMLLQQGLNDRSDAVKQAVQKHLLQGWLRFTEGNILELLHRLDV 290
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: A0A1S2ZE08_ERIEU (condensin complex subunit 3 n=1 Tax=Erinaceus europaeus TaxID=9365 RepID=A0A1S2ZE08_ERIEU) HSP 1 Score: 62.8 bits (151), Expect = 2.050e-9 Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 1
Query: 34 KSPAQLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI 282
K+ Q+V RT+DVKESVR+ A++ L E V + L QRV LL++G D S+ V +A L W R ++ +ELL RLD+
Sbjct: 208 KTLPQIVGRTKDVKESVRKLAYQILAEKVHMRALSIAQRVMLLQQGLNDRSDVVKQAVHKPLLQGWLRFSEGSILELLHRLDV 290
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: A0A6P8RK31_GEOSA (condensin complex subunit 3 isoform X1 n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8RK31_GEOSA) HSP 1 Score: 60.5 bits (145), Expect = 1.330e-8 Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 1
Query: 34 KSPAQLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI 282
K+ Q+V RT D+K++VR+ A++ L E + + L QRV LL++G D S+AV E + L W R + D +ELL LDI
Sbjct: 237 KTLPQIVGRTMDIKDAVRKLAYQVLSEKIHIRALSIAQRVQLLQQGLNDRSDAVKEVMQKKLLQAWLRFCNGDVLELLHCLDI 319
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: B3SB21_TRIAD (Uncharacterized protein (Fragment) n=2 Tax=Trichoplax TaxID=10227 RepID=B3SB21_TRIAD) HSP 1 Score: 59.7 bits (143), Expect = 2.460e-8 Identity = 30/79 (37.97%), Postives = 46/79 (58.23%), Query Frame = 1
Query: 46 QLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI 282
+++ RT+D+KESVRR A++ L E V K L QR+ LL+ G D S+ + C+ L +W + + LLQ LD+
Sbjct: 173 EIIERTKDIKESVRRVAYQVLAERVGIKSLTINQRLDLLENGLKDRSKGIQLICKGKLLTNWLVSLGSNVLVLLQHLDV 251
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: UPI00112ED6C8 (condensin complex subunit 3 isoform X1 n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112ED6C8) HSP 1 Score: 59.7 bits (143), Expect = 2.470e-8 Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 1
Query: 34 KSPAQLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI 282
K+ ++V RT DVK+ VR+ A++ L E + + L QRV LL++G D S+ V E + + W R + D +ELL RLD+
Sbjct: 209 KTLQEIVGRTMDVKDVVRKLAYQVLSEKIHMRALSIAQRVQLLQQGLNDRSDGVKEVIQKKILQTWLRYCEGDVLELLHRLDV 291
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: A0A8B6Y3D3_HYDVU (condensin complex subunit 3-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6Y3D3_HYDVU) HSP 1 Score: 57.4 bits (137), Expect = 9.760e-8 Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = 1
Query: 34 KSPAQLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLD 279
K+ L++RT+D+K+ R+AA+ TL E VS + L QR++LL G + S+ V ++C ML W R D + V+LL+ LD
Sbjct: 74 KTLPHLIVRTRDIKDLNRKAAYLTLSEKVSVRALTIAQRISLLTFGLNERSDMVRQSCIHML-KQWLRKFDNNVVKLLEALD 154 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig14904.3704.1 >prot_H-canaliculatus_F_contig14904.3704.1 ID=prot_H-canaliculatus_F_contig14904.3704.1|Name=mRNA_H-canaliculatus_F_contig14904.3704.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=91bp MPIPRIPPKSPAQLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLback to top mRNA from alignment at H-canaliculatus_F_contig14904:118..942+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig14904.3704.1 ID=mRNA_H-canaliculatus_F_contig14904.3704.1|Name=mRNA_H-canaliculatus_F_contig14904.3704.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=825bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14904:118..942+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14904:118..942+ >mRNA_H-canaliculatus_F_contig14904.3704.1 ID=mRNA_H-canaliculatus_F_contig14904.3704.1|Name=mRNA_H-canaliculatus_F_contig14904.3704.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=546bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14904:118..942+ (Hapterophycus canaliculatus Oshoro5f female)back to top |